ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18j21 |
|---|---|
| Clone Library Name | barley_pub |
>ZN593_MOUSE (Q9DB42) Zinc finger protein 593 (Zinc finger protein T86)| Length = 116 Score = 64.3 bits (155), Expect = 2e-10 Identities = 33/59 (55%), Positives = 40/59 (67%) Frame = -3 Query: 362 DEDLPGMGQFYCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQIDADLAGGMG 186 D DLPG G CL C RYF D A + H+RSK HKKR+KQLS P++Q +A+ A GMG Sbjct: 34 DPDLPGGGLHRCLACARYFIDSANLKTHFRSKDHKKRLKQLS-VEPYSQEEAERAAGMG 91
>ZN593_HUMAN (O00488) Zinc finger protein 593 (Zinc finger protein T86)| Length = 116 Score = 62.8 bits (151), Expect = 6e-10 Identities = 32/59 (54%), Positives = 39/59 (66%) Frame = -3 Query: 362 DEDLPGMGQFYCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQIDADLAGGMG 186 D DLPG G CL C RYF D + H+RSK HKKR+KQLS P++Q +A+ A GMG Sbjct: 34 DPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS-VEPYSQEEAERAAGMG 91
>BUD20_YEAST (Q08004) Bud site selection protein 20| Length = 166 Score = 62.0 bits (149), Expect = 1e-09 Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 2/99 (2%) Frame = -3 Query: 473 KTVRRGKFLVKADDAVYDELVKLADQGKDCEGKPL--PVDEDLPGMGQFYCLHCDRYFAD 300 KT RR + L D +Y++L K+ K L P+DE PG+GQ YC+HC +Y Sbjct: 10 KTKRRTRDL----DLIYNDL-----STKESVQKLLNQPLDETKPGLGQHYCIHCAKYMET 60 Query: 299 EAVKEDHYRSKRHKKRVKQLSGPAPHTQIDADLAGGMGM 183 + H + K HK+RVK+L G P+TQ +D A G + Sbjct: 61 AIALKTHLKGKVHKRRVKELRG-VPYTQEVSDAAAGYNL 98
>Z231_ENCCU (Q8SWF6) Zinc finger C2H2 protein ECU02_0310| Length = 104 Score = 58.5 bits (140), Expect = 1e-08 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Frame = -3 Query: 500 KVKKRRLNCKTVRRGK---FLVKADDAVYDELVKLADQGKDCEGKPLPVDEDLPGMGQFY 330 K KKRR N +R + F K D V +++ K + D +LPG G FY Sbjct: 7 KQKKRRSNKNRLRIKRARLFGPKDIDQVKEDIESQ---------KKIEYDPELPGGGHFY 57 Query: 329 CLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQIDADLAGGM 189 C CDR+F E V +H RS H++R K++ A H+Q DA+ A G+ Sbjct: 58 CCECDRHFITEKVLMEHKRSNPHRRRAKEVREVA-HSQRDAEWAVGL 103
>ZN346_MOUSE (Q9R0B7) Zinc finger protein 346 (Just another zinc finger protein)| Length = 294 Score = 35.4 bits (80), Expect = 0.11 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = -3 Query: 332 YCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQID----ADLAGGMGMPDNGLK 165 +C C F D A+ + HY KRH+K+ +L A + ++ +DL G G P K Sbjct: 186 FCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGRLADPAVSDLPAGKGYPCKTCK 245 Query: 164 LM 159 ++ Sbjct: 246 IV 247
>ZMAT2_MOUSE (Q9CPW7) Zinc finger matrin type 2| Length = 199 Score = 33.1 bits (74), Expect = 0.53 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%) Frame = -3 Query: 515 KCPHRKVKKRRLNCKTVRRGKFLVKADDAVYDELVKLADQGKDCE---GKPLPVDEDLPG 345 K + K+ ++RL T R K K V EL++ D D E GK + + + P Sbjct: 18 KDEYEKLAEKRL---TEEREKKDGKPVQPVKRELLRHRDYKVDLESKLGKTIVITKTTPQ 74 Query: 344 --MGQFYCLHCDRYFADEAVKEDHYRSKRHKKRV 249 MG +YC CD D DH K+H++ + Sbjct: 75 SEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNL 108
>ZMAT2_HUMAN (Q96NC0) Zinc finger matrin type 2| Length = 199 Score = 33.1 bits (74), Expect = 0.53 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%) Frame = -3 Query: 515 KCPHRKVKKRRLNCKTVRRGKFLVKADDAVYDELVKLADQGKDCE---GKPLPVDEDLPG 345 K + K+ ++RL T R K K V EL++ D D E GK + + + P Sbjct: 18 KDEYEKLAEKRL---TEEREKKDGKPVQPVKRELLRHRDYKVDLESKLGKTIVITKTTPQ 74 Query: 344 --MGQFYCLHCDRYFADEAVKEDHYRSKRHKKRV 249 MG +YC CD D DH K+H++ + Sbjct: 75 SEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNL 108
>ZN533_MOUSE (Q8BXJ8) Zinc finger protein 533| Length = 482 Score = 33.1 bits (74), Expect = 0.53 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Frame = -3 Query: 332 YCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSG--PAPHTQIDADLAGG 192 +C C+ A + HY K H+KRVKQLS P P Q L G Sbjct: 35 FCEVCNIQLNSAAQAQVHYDGKSHRKRVKQLSDGQPPPPVQGSVPLLAG 83 Score = 29.3 bits (64), Expect = 7.7 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Frame = -3 Query: 380 GKPLPVDEDLPGMG----QFYCLHCDRYFADEAVKEDHYRSKRHKKRV 249 G L V G G F+C CD + E + H S+RHK RV Sbjct: 341 GSRLKVQNGSKGSGLQNKMFHCEICDVHVNSEIQLKQHISSRRHKDRV 388
>ZN277_HUMAN (Q9NRM2) Zinc finger protein 277| Length = 438 Score = 33.1 bits (74), Expect = 0.53 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -3 Query: 329 CLHCDRYFADEAVKEDHYRSKRHKK 255 CL+C++ F D+ +DH R K+H+K Sbjct: 214 CLYCEKTFRDKNTLKDHMRKKQHRK 238
>RU1C_XENLA (Q03369) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)| (U1C protein) (U1-C) Length = 159 Score = 32.3 bits (72), Expect = 0.90 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Frame = -3 Query: 344 MGQFYCLHCDRYFADE--AVKEDHYRSKRHKKRVK 246 M +FYC +CD Y + +V++ H ++HK+ VK Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35
>RU1C_MOUSE (Q62241) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)| (U1C protein) (U1-C) Length = 159 Score = 32.3 bits (72), Expect = 0.90 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Frame = -3 Query: 344 MGQFYCLHCDRYFADE--AVKEDHYRSKRHKKRVK 246 M +FYC +CD Y + +V++ H ++HK+ VK Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35
>RU1C_HUMAN (P09234) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)| (U1C protein) (U1-C) Length = 159 Score = 32.3 bits (72), Expect = 0.90 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Frame = -3 Query: 344 MGQFYCLHCDRYFADE--AVKEDHYRSKRHKKRVK 246 M +FYC +CD Y + +V++ H ++HK+ VK Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35
>SPP2_CANGA (Q6FMB1) Pre-mRNA-splicing factor SPP2| Length = 169 Score = 32.3 bits (72), Expect = 0.90 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 10/112 (8%) Frame = -3 Query: 500 KVKKRRLNCKTVRRGKFLVK------ADDAVYDELVKLADQGKDCEGKPLPVDE----DL 351 K KKR++ T +K DD++ EL L ++ +D E + +PV+E L Sbjct: 48 KPKKRKIELATAESETIALKRAKNNIGDDSIVQELEALPEKVEDKEYEEMPVEEFGAAML 107 Query: 350 PGMGQFYCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQIDADLAG 195 GMG + DE ED SK H K++ PH QI + G Sbjct: 108 RGMG----------WTDENELED---SKSHSKKL-------PHEQIHPEGLG 139
>CCD16_MOUSE (Q8R1N0) Coiled-coil domain-containing protein 16 (Ovus mutant| candidate gene 1 protein) Length = 363 Score = 31.2 bits (69), Expect = 2.0 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -3 Query: 344 MGQFYCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQ 216 +GQ C C+ E + + H K+H++RV +L G TQ Sbjct: 48 LGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELKGAKGATQ 90
>CCD16_RAT (Q3MHS2) Coiled-coil domain-containing protein 16| Length = 370 Score = 31.2 bits (69), Expect = 2.0 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -3 Query: 344 MGQFYCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQ 216 +GQ C C+ E + + H K+H++RV +L G TQ Sbjct: 48 LGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELKGAKGATQ 90
>PRP9_YEAST (P19736) Pre-mRNA-splicing factor PRP9| Length = 530 Score = 30.4 bits (67), Expect = 3.4 Identities = 19/61 (31%), Positives = 27/61 (44%) Frame = -3 Query: 437 DDAVYDELVKLADQGKDCEGKPLPVDEDLPGMGQFYCLHCDRYFADEAVKEDHYRSKRHK 258 D A + L+K + C G + + G+ YC C R+F +V E H K HK Sbjct: 252 DAAAVENLIKSDFEHSYCRGS---LRSEAKGI---YCPFCSRWFKTSSVFESHLVGKIHK 305 Query: 257 K 255 K Sbjct: 306 K 306
>K6PF_BACSU (O34529) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 319 Score = 30.4 bits (67), Expect = 3.4 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Frame = -3 Query: 515 KCPHRKVKKRR----LNCKTVRRGKFLVKADDAVYDELVKLADQGKDCEGKPLPVDEDLP 348 +CP K + R N K + +V D Y KL + G C G P +D D+P Sbjct: 72 RCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEHGFPCVGVPGTIDNDIP 131 Query: 347 G 345 G Sbjct: 132 G 132
>JJJ1_YEAST (P53863) J protein type 1| Length = 590 Score = 30.0 bits (66), Expect = 4.5 Identities = 16/65 (24%), Positives = 30/65 (46%) Frame = -3 Query: 434 DAVYDELVKLADQGKDCEGKPLPVDEDLPGMGQFYCLHCDRYFADEAVKEDHYRSKRHKK 255 + VYD + + D EG+ L + C C++ F E ++H +K HKK Sbjct: 315 EKVYDNFGEFENSKNDKEGEVLIYE----------CFICNKTFKSEKQLKNHINTKLHKK 364 Query: 254 RVKQL 240 ++++ Sbjct: 365 NMEEI 369
>ZN346_PONPY (Q5R4W8) Zinc finger protein 346| Length = 310 Score = 30.0 bits (66), Expect = 4.5 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -3 Query: 332 YCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQID----ADLAGGMGMPDNGLK 165 +C C F D + + HY K+H+K+ +L A + ++ D G G P K Sbjct: 202 FCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTCK 261 Query: 164 LM 159 ++ Sbjct: 262 IV 263
>ZN346_HUMAN (Q9UL40) Zinc finger protein 346 (Just another zinc finger protein)| Length = 294 Score = 30.0 bits (66), Expect = 4.5 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -3 Query: 332 YCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQID----ADLAGGMGMPDNGLK 165 +C C F D + + HY K+H+K+ +L A + ++ D G G P K Sbjct: 186 FCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTCK 245 Query: 164 LM 159 ++ Sbjct: 246 IV 247
>TRPC_HELPY (O25867) Tryptophan biosynthesis protein trpCF [Includes:| Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS); N-(5'-phospho-ribosyl)anthranilate isomerase (EC 5.3.1.24) (PRAI)] Length = 452 Score = 29.6 bits (65), Expect = 5.9 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +3 Query: 3 FR*KLASMRQADTAMYNPNLLDQSNYLQVTNQAKLVQM 116 F+ KLA M A+ + ++LD NYL++ N AK + M Sbjct: 118 FQIKLARMMGANAVLLMLSVLDDKNYLELFNLAKSLNM 155
>ZN385_HUMAN (Q96PM9) Zinc finger protein 385 (Hematopoietic zinc finger| protein) (Retinal zinc finger protein) Length = 366 Score = 29.6 bits (65), Expect = 5.9 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Frame = -3 Query: 329 CLHCDRYFADEAVKEDHYRSKRHKKRVKQLS-----GPAPHTQIDADLAGGMGMPDNG 171 C C F ++ E HY+ RH +RVK + G P + D A P NG Sbjct: 56 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNG 113
>ZN451_HUMAN (Q9Y4E5) Zinc finger protein 451 (Coactivator for steroid| receptors) Length = 1061 Score = 29.6 bits (65), Expect = 5.9 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -3 Query: 332 YCLHCDRYFADEAVKEDHYRSKRHKKRV 249 YC C++ F DE ++H ++ HK RV Sbjct: 363 YCPDCNQVFVDETSTQNHKQNSGHKVRV 390
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 29.6 bits (65), Expect = 5.9 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +2 Query: 272 SGSDPPSRPRPQSTDRSGGSRTGPCQGG 355 S P R RP + GG R GP QGG Sbjct: 184 SSQPAPERERPAARPGPGGPRPGPAQGG 211
>ZN318_HUMAN (Q5VUA4) Zinc finger protein 318 (Endocrine regulatory protein)| Length = 2099 Score = 29.3 bits (64), Expect = 7.7 Identities = 12/44 (27%), Positives = 20/44 (45%) Frame = -3 Query: 374 PLPVDEDLPGMGQFYCLHCDRYFADEAVKEDHYRSKRHKKRVKQ 243 P E L + FYC C+ + D E H + +H ++ K+ Sbjct: 943 PAKGSEFLVPISGFYCQLCEEFLGDPISGEQHVKGHQHNEKYKK 986
>STAB2_RAT (Q8CFM6) Stabilin-2 precursor (Hyaluronan receptor for endocytosis)| [Contains: 175 kDa stabilin-2 (175 kDa hyaluronan receptor for endocytosis)] (Fragment) Length = 1431 Score = 29.3 bits (64), Expect = 7.7 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -3 Query: 395 GKDCEGKPLPVDEDLPGMGQFY--CLHCDRYFADEAVKEDHYRS 270 G DCE + LP+D L GQ + D YF D V H RS Sbjct: 1026 GVDCEPEQLPLDRCLQDNGQCHPDASCADLYFQDTTVGVFHLRS 1069
>ZN533_HUMAN (Q569K4) Zinc finger protein 533| Length = 471 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -3 Query: 332 YCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAP 225 +C C+ A + H K H+KRVKQLS P Sbjct: 35 FCEVCNIQLNSAAQAQVHSNGKSHRKRVKQLSDGQP 70
>CCD16_BRARE (Q6P0I6) Coiled-coil domain-containing protein 16| Length = 326 Score = 29.3 bits (64), Expect = 7.7 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 5/91 (5%) Frame = -3 Query: 464 RRGKFLVKADDAVYDELVKLADQGKDCEGKPLPVDEDLP---GMGQFYCLHCDRYFADEA 294 R+GK VKA ++L +L + + G+ V+ G GQ C CD + Sbjct: 5 RKGK-AVKA--VKQEDLRRLMQETRRDSGRQKRVESPFARYSGAGQLMCALCDAPVKNAL 61 Query: 293 VKEDHYRSKRHKKRVKQL-SGPAP-HTQIDA 207 + + H K+HK ++++L S AP HT A Sbjct: 62 LWQTHVLGKQHKDKLQELKSRTAPAHTPAPA 92
>FKH_DROME (P14734) Fork head protein| Length = 510 Score = 29.3 bits (64), Expect = 7.7 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Frame = -3 Query: 389 DCEGKPLPVDEDLPGMGQFYCLHCD--RYFADEAVKEDHYRSKRHKKR-VKQLSGPAPHT 219 DC K +P D PG G F+ LH D F + R K KK ++QL H+ Sbjct: 266 DCFVK-IPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKDEKKEAIRQLHKSPSHS 324 Query: 218 QIDADLAG 195 ++A G Sbjct: 325 SLEATSPG 332
>CIZ1_HUMAN (Q9ULV3) Cip1-interacting zinc finger protein (Nuclear protein| NP94) Length = 898 Score = 29.3 bits (64), Expect = 7.7 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -3 Query: 332 YCLHCDRYFADEAVKEDHYRSKRHKKRVKQL 240 +C C+RYF +H +S+ HK + K+L Sbjct: 686 FCTVCNRYFKTPRKFVEHVKSQGHKDKAKEL 716
>STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form stabilin-2]| Length = 2559 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Frame = -3 Query: 395 GKDCEGKPLPVDEDLPGMGQFY----CLHCDRYFADEAVKEDHYRS 270 G+DCE + LP+D L GQ + C+ D +F D V H RS Sbjct: 2169 GRDCEPEQLPLDRCLQDNGQCHPDANCV--DLHFQDTTVGVFHLRS 2212
>CCD16_HUMAN (Q96NB3) Coiled-coil domain-containing protein 16| Length = 372 Score = 28.9 bits (63), Expect = 10.0 Identities = 12/43 (27%), Positives = 22/43 (51%) Frame = -3 Query: 344 MGQFYCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQ 216 +GQ C C+ E + + H K+H+++V +L G +Q Sbjct: 48 LGQLSCALCNTPVKSELLWQTHVLGKQHREKVAELKGAKEASQ 90
>K6PF_BACST (P00512) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 319 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -3 Query: 449 LVKADDAVYDELVKLADQGKDCEGKPLPVDEDLPG 345 +V D Y KL + G C G P +D D+PG Sbjct: 98 VVIGGDGSYQGAKKLTEHGFPCVGVPGTIDNDIPG 132 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,062,904 Number of Sequences: 219361 Number of extensions: 1346060 Number of successful extensions: 5177 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4859 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5175 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
