ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18j17 |
|---|---|
| Clone Library Name | barley_pub |
>COX1_BACPF (Q04440) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Cytochrome aa3 subunit 1) Length = 624 Score = 33.9 bits (76), Expect = 0.38 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%) Frame = -1 Query: 247 VHKPSPMAPAEEV*CLRMPSGILSSILWGVVLYTCVLFFFSFGLLIVY--------WLVM 92 +H M PAE V + MP+G + + + LFF FGL+++ W+V Sbjct: 529 IHGDGTMKPAEPVTDIHMPNGSILPFIMSI-----GLFFAGFGLIMLNMDKPIINPWIVA 583 Query: 91 VGSLILT 71 +G L LT Sbjct: 584 IGGLALT 590
>GLGA2_RHIME (P58394) Glycogen synthase 2 (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase 2) Length = 486 Score = 33.5 bits (75), Expect = 0.49 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = -1 Query: 553 FDES*DPTLQHVISRRTT--RLPSFI*LGACVRCRVSRQFPLPDICHPVPFLPINQLVW 383 +D S DP ++H S R RLP+ R + R F LPD C P+ F +N+L W Sbjct: 253 WDPSSDPCIEHHYSARVPLRRLPN--------RQVLLRHFGLPDTCGPI-FASVNRLTW 302
>SACB_BACSU (P05655) Levansucrase precursor (EC 2.4.1.10)| (Beta-D-fructofuranosyl transferase) (Sucrose 6-fructosyl transferase) Length = 473 Score = 31.2 bits (69), Expect = 2.4 Identities = 18/41 (43%), Positives = 21/41 (51%) Frame = -2 Query: 402 QSINWSGIRYYLRDGKISKIERENSSKYTDLGGKHLYGKRT 280 Q+ WSG + DGKI YTD GKH YGK+T Sbjct: 159 QTQEWSGSATFTSDGKIRLF-------YTDFSGKH-YGKQT 191
>SACB_BACST (P94468) Levansucrase precursor (EC 2.4.1.10)| (Beta-D-fructofuranosyl transferase) (Sucrose 6-fructosyl transferase) Length = 473 Score = 31.2 bits (69), Expect = 2.4 Identities = 18/41 (43%), Positives = 21/41 (51%) Frame = -2 Query: 402 QSINWSGIRYYLRDGKISKIERENSSKYTDLGGKHLYGKRT 280 Q+ WSG + DGKI YTD GKH YGK+T Sbjct: 159 QTQEWSGSATFTSDGKIRLF-------YTDFSGKH-YGKQT 191
>YFE0_YEAST (P43562) Probable metabolite transport protein YFL040W| Length = 540 Score = 30.8 bits (68), Expect = 3.2 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = -2 Query: 594 LLICTLTELVSMWNLTRVEIQLCNMLSPEGPQDSLRSYNWGLVFVAVLVDNFL-YPISAI 418 LLIC + + + + N + + N + P G + S SY + + +LV ++L +S Sbjct: 121 LLICRMIKGMILGNFSILVASYANEVIPRGKRGSTMSYIQLCLTIGILVMHYLCIALSLW 180 Query: 417 RSHFSQSINW 388 SHF+ I W Sbjct: 181 DSHFAFRIAW 190
>YDDA_ECOLI (P31826) Inner membrane ABC transporter ATP-binding protein yddA| (CDS102) Length = 561 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/66 (28%), Positives = 33/66 (50%) Frame = +3 Query: 93 ITNQ*TINKPKEKKNKTQVYNTTPHKIEDRIPLGILRHHTSSAGAIGLGLWTGSRATTFQ 272 +T Q NKPK ++ QV + + +++I L L H S + L ++G+ TT Sbjct: 351 LTEQRPTNKPKNCQHAVQVADASIRTPDNKIILENLNFHVSPGKWLLLKGYSGAGKTTLL 410 Query: 273 QGMSSC 290 + +S C Sbjct: 411 KTLSHC 416
>NU4M_METSE (O47497) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 491 Score = 30.0 bits (66), Expect = 5.4 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = -2 Query: 588 ICTLTELVSMWNLTRVEIQLCNMLSPEGPQDSLRSYNWGLVFVAV-LVDNFLYPISAIRS 412 + TLT + +W +E Q + E ++ WG +F+AV + F ++A+ + Sbjct: 42 LATLTATLILWAAFDMEGQFQTINQTEWIVPPALNFKWGPLFLAVDGISLFFLILTALLT 101 Query: 411 HFSQSINWSGIRYYLRD 361 I+W+ I++ L++ Sbjct: 102 PICILISWNSIKFLLKE 118
>Y4386_RHILO (Q98E66) Hypothetical UPF0187 protein mll4386| Length = 309 Score = 29.6 bits (65), Expect = 7.1 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -1 Query: 205 CLRMPSGILSSILWGVVLYTCVLFFFSFGL 116 CL +P G++S+ W L+T ++ + FGL Sbjct: 229 CLLLPIGLISTTGWATPLFTALIAYTFFGL 258
>METK_MYCGE (P47293) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 383 Score = 29.6 bits (65), Expect = 7.1 Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 1/131 (0%) Frame = -2 Query: 570 LVSMWNLTRVEIQLCNMLSPEGPQD-SLRSYNWGLVFVAVLVDNFLYPISAIRSHFSQSI 394 +VS+ + E+ + + S PQ +++ +N + + VL++ + ++F Sbjct: 282 IVSLGWASECEVSISWVFSKPNPQSITVKCFNTNIQYDEVLINR------VVNNYF---- 331 Query: 393 NWSGIRYYLRDGKISKIERENSSKYTDLGGKHLYGKRTYPAGKSLLGYLSISLAQWHQPK 214 NWS + I K++ + KY+D ++ G+ L+ W QP Sbjct: 332 NWSITKI------IDKLKLLDFVKYSDY---------------AVYGHFGNDLSPWEQPT 370 Query: 213 KYDV*ECLVES 181 + D ECL+++ Sbjct: 371 ELDKLECLIKN 381
>YORM_TTV1 (P19297) Hypothetical 38.6 kDa protein| Length = 352 Score = 29.6 bits (65), Expect = 7.1 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +3 Query: 267 FQQGMSSCHRDASHRDRCTSNC 332 FQQ +SSC++ S R +C +NC Sbjct: 283 FQQCISSCYQQTSGRTQCINNC 304
>KRA43_HUMAN (Q9BYR4) Keratin-associated protein 4-3 (Keratin-associated protein| 4.3) (Ultrahigh sulfur keratin-associated protein 4.3) (Fragment) Length = 98 Score = 29.3 bits (64), Expect = 9.3 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = -2 Query: 195 CLVESC--PQFCGASCCTPVFCSS 130 C + SC PQ C SCC P C S Sbjct: 37 CCISSCYRPQCCQPSCCRPACCIS 60
>MALT_SALTY (Q8ZLI3) HTH-type transcriptional regulator malT (ATP-dependent| transcriptional activator malT) Length = 901 Score = 29.3 bits (64), Expect = 9.3 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 288 KRTYPAGKSLLGYLSISLAQWHQP 217 KR Y + SL L I LAQWH+P Sbjct: 99 KRQYASLTSLFAQLFIELAQWHRP 122
>MALT_SALTI (Q8Z227) HTH-type transcriptional regulator malT (ATP-dependent| transcriptional activator malT) Length = 901 Score = 29.3 bits (64), Expect = 9.3 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 288 KRTYPAGKSLLGYLSISLAQWHQP 217 KR Y + SL L I LAQWH+P Sbjct: 99 KRQYASLTSLFAQLFIELAQWHRP 122
>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2| Length = 1484 Score = 29.3 bits (64), Expect = 9.3 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 250 VAEQRLSSRVCPLAIEMLPTEIGVLRTVLPFNLAYFPISQVVPDTRP 390 +A Q+LSSRVCP + P + R PF P+S V +P Sbjct: 906 IAMQQLSSRVCPPGVPYHPHQPAHPRLPGPFPQVAHPMSVTVSAPKP 952
>FTSH_STRR6 (P59652) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 652 Score = 29.3 bits (64), Expect = 9.3 Identities = 15/56 (26%), Positives = 28/56 (50%) Frame = -2 Query: 471 LVFVAVLVDNFLYPISAIRSHFSQSINWSGIRYYLRDGKISKIERENSSKYTDLGG 304 L+F+ LV F Y S S SQ IN++ + + DG + ++ + + ++ G Sbjct: 16 LLFIFFLVTGFQYFYSGNNSGGSQQINYTELVQEITDGNVKELTYQPNGSVIEVSG 71
>FTSH_STRPN (O69076) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 652 Score = 29.3 bits (64), Expect = 9.3 Identities = 15/56 (26%), Positives = 28/56 (50%) Frame = -2 Query: 471 LVFVAVLVDNFLYPISAIRSHFSQSINWSGIRYYLRDGKISKIERENSSKYTDLGG 304 L+F+ LV F Y S S SQ IN++ + + DG + ++ + + ++ G Sbjct: 16 LLFIFFLVTGFQYFYSGNNSGGSQQINYTELVQEITDGNVKELTYQPNGSVIEVSG 71
>SACB_BACAM (P21130) Levansucrase precursor (EC 2.4.1.10)| (Beta-D-fructofuranosyl transferase) (Sucrose 6-fructosyl transferase) Length = 472 Score = 29.3 bits (64), Expect = 9.3 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = -2 Query: 402 QSINWSGIRYYLRDGKISKIERENSSKYTDLGGKHLYGKRT 280 Q+ WSG + DGKI YTD GKH YGK++ Sbjct: 159 QTQEWSGSATFTSDGKIRLF-------YTDYSGKH-YGKQS 191
>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein| 5.3) (Ultrahigh sulfur keratin-associated protein 5.3) (Keratin-associated protein 5-9) (Keratin-associated protein 5.9) (UHS KerB-like) Length = 238 Score = 29.3 bits (64), Expect = 9.3 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = -2 Query: 168 CGASCCTPVFCSS 130 CG+SCC PV CSS Sbjct: 87 CGSSCCVPVCCSS 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,729,654 Number of Sequences: 219361 Number of extensions: 2073275 Number of successful extensions: 5833 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5436 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5826 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
