ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18j11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PR4_PHAVU (Q09020) Wound-induced basic protein 35 0.17
2YAF2_CAEEL (P52881) Hypothetical protein F46C5.2 30 5.4

>PR4_PHAVU (Q09020) Wound-induced basic protein|
          Length = 47

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = -2

Query: 430 RKMEEHKPKN*RFKANENKPVMNE 359
           RK EE KPK  R KA+ENKP+M E
Sbjct: 24  RKTEEQKPKEHRPKASENKPIMTE 47



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>YAF2_CAEEL (P52881) Hypothetical protein F46C5.2|
          Length = 182

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 598 DGKLCGDQTEASRGRVCFVRRVKKCP 521
           +GK+C       +G  CF+R+ K CP
Sbjct: 31  EGKVCTSGATTCKGNACFMRQCKHCP 56


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,098,084
Number of Sequences: 219361
Number of extensions: 1721237
Number of successful extensions: 3578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3577
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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