ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18j11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106521.1| Zea mays PCO093643 mRNA sequence 58 4e-05
2dbj|AK061920.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
4dbj|AK120436.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
5dbj|AK073415.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
7emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa... 56 1e-04
8emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa... 56 1e-04
9emb|BX323799.14| Zebrafish DNA sequence from clone CH211-159B19 ... 48 0.034
10gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome... 44 0.53
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.53
13gb|AY811985.1| Schistosoma japonicum SJCHGC07934 protein mRNA, p... 42 2.1
14gb|AC115680.3| Dictyostelium discoideum chromosome 2 map 4915084... 42 2.1
15gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence 40 8.2
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.2
17gb|AC102769.11| Mus musculus chromosome 17, clone RP23-89A3, com... 40 8.2
18gb|AY343494.2| Oryza sativa (indica cultivar-group) putative pec... 40 8.2
19gb|AC130210.4| Mus musculus BAC clone RP24-344N22 from chromosom... 40 8.2
20gb|AC119733.2| Homo sapiens 3 RP11-159G9 (Roswell Park Cancer In... 40 8.2
21emb|AL356452.12| Human DNA sequence from clone RP11-562L19 on ch... 40 8.2
22gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, co... 40 8.2
23emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in... 40 8.2
24gb|AC069220.11| Homo sapiens 3 BAC RP11-115B16 (Roswell Park Can... 40 8.2
25gb|AC008550.5| Homo sapiens chromosome 5 clone CTC-507E12, compl... 40 8.2
26gb|AC156639.2| Mus musculus BAC clone RP23-301M11 from chromosom... 40 8.2
27dbj|AK040393.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 40 8.2
28gb|AC000054.10| Homo sapiens chromosome 3 clone p856 map 3q26, c... 40 8.2
29ref|XM_624873.1| PREDICTED: Apis mellifera similar to DNA-repair... 40 8.2
30dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
31dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: R... 40 8.2
32dbj|AP006505.1| Mus musculus genomic DNA, chromosome 4, clone: R... 40 8.2
33gb|AC079924.6| Homo sapiens BAC clone RP11-469L8 from 2, complet... 40 8.2
34gb|AC010348.4|AC010348 Homo sapiens chromosome 5 clone CTD-2018K... 40 8.2
35dbj|AK100728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.2
36emb|BX928749.12| Zebrafish DNA sequence from clone CH211-201A8 i... 40 8.2
37gb|AF080235.1|AF080235 Streptomyces cyanogenus landomycin biosyn... 40 8.2
38gb|AC148600.2| Xenopus tropicalis clone CH216-62H10, complete se... 40 8.2
39gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.2
40emb|CT010437.15| Mouse DNA sequence from clone RP23-333O22 on ch... 40 8.2
41emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 8.2
42emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on ch... 40 8.2 
>gb|AY106521.1| Zea mays PCO093643 mRNA sequence
          Length = 506

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                
Query: 356 tcattcgttcattacaggcttgttctcgttggccttg 392
           |||||||||||| ||||||||||||||||| ||||||
Sbjct: 233 tcattcgttcatcacaggcttgttctcgttagccttg 197
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>dbj|AK061920.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B08, full
           insert sequence
          Length = 394

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 356 tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttcggcttgtg 415
           |||||| ||||| ||||||||||||||  ||||||||  |||||  | ||| ||||| ||
Sbjct: 239 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 180

                       
Query: 416 ctcttccatttt 427
           ||||||||||||
Sbjct: 179 ctcttccatttt 168
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                            
Query: 356      tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttcggcttgtg 415
                |||||| ||||| ||||||||||||||  ||||||||  |||||  | ||| ||||| ||
Sbjct: 12286702 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 12286643

                            
Query: 416      ctcttccatttt 427
                ||||||||||||
Sbjct: 12286642 ctcttccatttt 12286631
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>dbj|AK120436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098D06, full
           insert sequence
          Length = 364

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 356 tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttcggcttgtg 415
           |||||| ||||| ||||||||||||||  ||||||||  |||||  | ||| ||||| ||
Sbjct: 209 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 150

                       
Query: 416 ctcttccatttt 427
           ||||||||||||
Sbjct: 149 ctcttccatttt 138
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>dbj|AK073415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043B09, full
            insert sequence
          Length = 1250

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 356  tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttcggcttgtg 415
            |||||| ||||| ||||||||||||||  ||||||||  |||||  | ||| ||||| ||
Sbjct: 1081 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 1022

                        
Query: 416  ctcttccatttt 427
            ||||||||||||
Sbjct: 1021 ctcttccatttt 1010
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                            
Query: 356      tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttcggcttgtg 415
                |||||| ||||| ||||||||||||||  ||||||||  |||||  | ||| ||||| ||
Sbjct: 12241072 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 12241013

                            
Query: 416      ctcttccatttt 427
                ||||||||||||
Sbjct: 12241012 ctcttccatttt 12241001
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>emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 163702

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 356  tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttcggcttgtg 415
            |||||| ||||| ||||||||||||||  ||||||||  |||||  | ||| ||||| ||
Sbjct: 1067 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 1008

                        
Query: 416  ctcttccatttt 427
            ||||||||||||
Sbjct: 1007 ctcttccatttt 996
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>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 159296

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                         
Query: 356   tcattcgttcattacaggcttgttctcgttggccttgaacctctagttcttcggcttgtg 415
             |||||| ||||| ||||||||||||||  ||||||||  |||||  | ||| ||||| ||
Sbjct: 10615 tcattcattcatcacaggcttgttctcactggccttgggcctctgctcctttggcttttg 10674

                         
Query: 416   ctcttccatttt 427
             ||||||||||||
Sbjct: 10675 ctcttccatttt 10686
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>emb|BX323799.14| Zebrafish DNA sequence from clone CH211-159B19 in linkage group 13,
             complete sequence
          Length = 188145

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 5     tgtaatttttacaccttaaaaaat 28
             ||||||||||||||||||||||||
Sbjct: 94773 tgtaatttttacaccttaaaaaat 94750
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>gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0071K13, complete sequence
          Length = 176150

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 351   gatggtcattcgttcattacaggcttgttctcgttggccttg 392
             |||| ||||||  |||| ||||||||||||||| ||||||||
Sbjct: 73014 gatgctcattctgtcatcacaggcttgttctcgctggccttg 73055
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 351      gatggtcattcgttcattacaggcttgttctcgttggccttg 392
                |||| ||||||  |||| ||||||||||||||| ||||||||
Sbjct: 14963227 gatgctcattctgtcatcacaggcttgttctcgctggccttg 14963268
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 351      gatggtcattcgttcattacaggcttgttctcgttggccttg 392
                |||| ||||||  |||| ||||||||||||||| ||||||||
Sbjct: 15044922 gatgctcattctgtcatcacaggcttgttctcgctggccttg 15044963
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>gb|AY811985.1| Schistosoma japonicum SJCHGC07934 protein mRNA, partial cds
          Length = 686

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 175 ataaaatctactgatttatca 195
           |||||||||||||||||||||
Sbjct: 221 ataaaatctactgatttatca 241
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>gb|AC115680.3| Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4,
             complete sequence
          Length = 90373

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    tttttacaccttaaaaaatta 30
             |||||||||||||||||||||
Sbjct: 21173 tttttacaccttaaaaaatta 21193
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>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence
          Length = 142376

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 333    gcatcggactgtccggaggatggt 356
              |||||||||||||||| |||||||
Sbjct: 116206 gcatcggactgtccggtggatggt 116229
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 485      acttcatcttcggcggcggc 504
                ||||||||||||||||||||
Sbjct: 11007650 acttcatcttcggcggcggc 11007631
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>gb|AC102769.11| Mus musculus chromosome 17, clone RP23-89A3, complete sequence
          Length = 162417

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   agaagtggattccaaaacca 146
             ||||||||||||||||||||
Sbjct: 34302 agaagtggattccaaaacca 34283
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>gb|AY343494.2| Oryza sativa (indica cultivar-group) putative pectinesterase mRNA,
           complete cds
          Length = 1302

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 485 acttcatcttcggcggcggc 504
           ||||||||||||||||||||
Sbjct: 648 acttcatcttcggcggcggc 667
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>gb|AC130210.4| Mus musculus BAC clone RP24-344N22 from chromosome 7, complete sequence
          Length = 186858

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     aatttttacaccttaaaaaa 27
             ||||||||||||||||||||
Sbjct: 48991 aatttttacaccttaaaaaa 49010
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>gb|AC119733.2| Homo sapiens 3 RP11-159G9 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 154803

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  tgtgctcttccatttttctt 431
            ||||||||||||||||||||
Sbjct: 6791 tgtgctcttccatttttctt 6772
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>emb|AL356452.12| Human DNA sequence from clone RP11-562L19 on chromosome 13, complete
             sequence
          Length = 81586

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   gataaaatctactgatttat 193
             ||||||||||||||||||||
Sbjct: 28442 gataaaatctactgatttat 28461
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>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 485    acttcatcttcggcggcggc 504
              ||||||||||||||||||||
Sbjct: 125472 acttcatcttcggcggcggc 125491
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>emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in linkage group 21,
             complete sequence
          Length = 243457

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 574   tttgatctccacatagtttg 593
             ||||||||||||||||||||
Sbjct: 62662 tttgatctccacatagtttg 62681
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>gb|AC069220.11| Homo sapiens 3 BAC RP11-115B16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157448

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 66    aaaagaagaaacgtgagaaatagt 89
             ||||||||||| ||||||||||||
Sbjct: 49632 aaaagaagaaaagtgagaaatagt 49655
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>gb|AC008550.5| Homo sapiens chromosome 5 clone CTC-507E12, complete sequence
          Length = 125406

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 61     ttcataaaagaagaaacgtgagaa 84
              |||||||||||||||| |||||||
Sbjct: 118506 ttcataaaagaagaaatgtgagaa 118529
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>gb|AC156639.2| Mus musculus BAC clone RP23-301M11 from chromosome 9, complete sequence
          Length = 188292

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    atgttcacaccatccatttt 294
              ||||||||||||||||||||
Sbjct: 114356 atgttcacaccatccatttt 114375
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>dbj|AK040393.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A430091A17 product:unclassifiable, full
            insert sequence
          Length = 4309

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    aatttttacaccttaaaaaa 27
            ||||||||||||||||||||
Sbjct: 3101 aatttttacaccttaaaaaa 3082
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>gb|AC000054.10| Homo sapiens chromosome 3 clone p856 map 3q26, complete sequence
          Length = 64211

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    aaaagaagaaacgtgagaaatagt 89
             ||||||||||| ||||||||||||
Sbjct: 37641 aaaagaagaaaagtgagaaatagt 37618
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>ref|XM_624873.1| PREDICTED: Apis mellifera similar to DNA-repair protein complementing
            XP-C cells homolog (Xeroderma pigmentosum group C
            complementing protein homolog) (XPCDM) (Mutagen-sensitive
            209 protein) (LOC552498), mRNA
          Length = 2260

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   aaggtttgttcataaaagaa 72
            ||||||||||||||||||||
Sbjct: 1953 aaggtttgttcataaaagaa 1972
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 485      acttcatcttcggcggcggc 504
                ||||||||||||||||||||
Sbjct: 11004413 acttcatcttcggcggcggc 11004394
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>dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-284M8, complete
             sequence
          Length = 255195

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 372   ggcttgttctcgttggccttgaac 395
             ||||||||||| ||||||||||||
Sbjct: 13203 ggcttgttctccttggccttgaac 13180
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>dbj|AP006505.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-266A3, complete
              sequence
          Length = 199759

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 372    ggcttgttctcgttggccttgaac 395
              ||||||||||| ||||||||||||
Sbjct: 131775 ggcttgttctccttggccttgaac 131752
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>gb|AC079924.6| Homo sapiens BAC clone RP11-469L8 from 2, complete sequence
          Length = 55282

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    ttgttcataaaagaagaaac 77
             ||||||||||||||||||||
Sbjct: 10938 ttgttcataaaagaagaaac 10957
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>gb|AC010348.4|AC010348 Homo sapiens chromosome 5 clone CTD-2018K14, complete sequence
          Length = 162868

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 61    ttcataaaagaagaaacgtgagaa 84
             |||||||||||||||| |||||||
Sbjct: 77362 ttcataaaagaagaaatgtgagaa 77385
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>dbj|AK100728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117F04, full
           insert sequence
          Length = 1436

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 485 acttcatcttcggcggcggc 504
           ||||||||||||||||||||
Sbjct: 664 acttcatcttcggcggcggc 683
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>emb|BX928749.12| Zebrafish DNA sequence from clone CH211-201A8 in linkage group 2,
             complete sequence
          Length = 215263

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ttttacaccttaaaaaatta 30
             ||||||||||||||||||||
Sbjct: 23813 ttttacaccttaaaaaatta 23832
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>gb|AF080235.1|AF080235 Streptomyces cyanogenus landomycin biosynthetic gene cluster, complete
             sequence
          Length = 34644

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 374   cttgttctcgttggccttgaacct 397
             ||||| ||||||||||||||||||
Sbjct: 12730 cttgtactcgttggccttgaacct 12707
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>gb|AC148600.2| Xenopus tropicalis clone CH216-62H10, complete sequence
          Length = 162075

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   agtcacatgattggcagcta 322
             ||||||||||||||||||||
Sbjct: 51581 agtcacatgattggcagcta 51600
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>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042B10, from chromosome 3, complete sequence
          Length = 144205

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 485   acttcatcttcggcggcggc 504
             ||||||||||||||||||||
Sbjct: 51135 acttcatcttcggcggcggc 51116
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>emb|CT010437.15| Mouse DNA sequence from clone RP23-333O22 on chromosome 17, complete
             sequence
          Length = 172696

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   agaagtggattccaaaacca 146
             ||||||||||||||||||||
Sbjct: 49745 agaagtggattccaaaacca 49764
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 181     tctactgatttatcattccaggcatgca 208
               ||||||||||||| || |||||||||||
Sbjct: 2143787 tctactgatttatgatcccaggcatgca 2143760
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>emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on chromosome 4, complete
              sequence
          Length = 173824

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 372    ggcttgttctcgttggccttgaac 395
              ||||||||||| ||||||||||||
Sbjct: 154787 ggcttgttctccttggccttgaac 154810


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,831,584
Number of Sequences: 3902068
Number of extensions: 5831584
Number of successful extensions: 104212
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103912
Number of HSP's gapped (non-prelim): 300
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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