ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18j09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MMRN2_HUMAN (Q9H8L6) Multimerin-2 precursor (EMILIN-3) (Elastin ... 28 6.7
2R1AB_CVPPU (Q9IW06) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 28 8.8

>MMRN2_HUMAN (Q9H8L6) Multimerin-2 precursor (EMILIN-3) (Elastin microfibril|
           interface located protein 3) (Elastin microfibril
           interfacer 3) (EndoGlyx-1 p125/p140 subunit)
          Length = 949

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 268 NFPHSIVRDLPGIWKRSPGDRRMKSMKEMSTG 363
           N  H +   LPG+WK  PG+     M+   TG
Sbjct: 186 NDVHRVADSLPGLWKALPGNLTAAVMEANQTG 217



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>R1AB_CVPPU (Q9IW06) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown
            protein 1; 3C-like
          Length = 6684

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -1

Query: 134  CYSFFCYFSLFGSCCLLISSSMLVITANSTCYMVESREIYTV 9
            CY    +  +FG C  LI   ++ +  N+  Y V     + +
Sbjct: 2682 CYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQNTFFMI 2723


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,441,224
Number of Sequences: 219361
Number of extensions: 547240
Number of successful extensions: 2268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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