>COX1_BACPF (Q04440) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Cytochrome aa3 subunit 1)
          Length = 624

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = -1

Query: 248 VHKPSPMAPAEEV*CLRMPSGILSSILWGVVLYTCVLFFFSFGLLIVY--------WLVM 93
           +H    M PAE V  + MP+G +   +  +      LFF  FGL+++         W+V 
Sbjct: 529 IHGDGTMKPAEPVTDIHMPNGSILPFIMSI-----GLFFAGFGLIMLNMDKPIINPWIVA 583

Query: 92  VGSLILT 72
           +G L LT
Sbjct: 584 IGGLALT 590

>GLGA2_RHIME (P58394) Glycogen synthase 2 (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase 2)
          Length = 486

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 554 FDES*DPTLQHVISRRTT--RLPSFI*LGACVRCRVSRQFPLPDICHPVPFLPINQLVW 384
           +D S DP ++H  S R    RLP+        R  + R F LPD C P+ F  +N+L W
Sbjct: 253 WDPSSDPCIEHHYSARVPLRRLPN--------RQVLLRHFGLPDTCGPI-FASVNRLTW 302

>SACB_BACSU (P05655) Levansucrase precursor (EC 2.4.1.10)|
           (Beta-D-fructofuranosyl transferase) (Sucrose
           6-fructosyl transferase)
          Length = 473

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -2

Query: 403 QSINWSGIRYYLRDGKISKIERENSSKYTDLGGKHLYGKRT 281
           Q+  WSG   +  DGKI          YTD  GKH YGK+T
Sbjct: 159 QTQEWSGSATFTSDGKIRLF-------YTDFSGKH-YGKQT 191

>SACB_BACST (P94468) Levansucrase precursor (EC 2.4.1.10)|
           (Beta-D-fructofuranosyl transferase) (Sucrose
           6-fructosyl transferase)
          Length = 473

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -2

Query: 403 QSINWSGIRYYLRDGKISKIERENSSKYTDLGGKHLYGKRT 281
           Q+  WSG   +  DGKI          YTD  GKH YGK+T
Sbjct: 159 QTQEWSGSATFTSDGKIRLF-------YTDFSGKH-YGKQT 191

>YFE0_YEAST (P43562) Probable metabolite transport protein YFL040W|
          Length = 540

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -2

Query: 595 LLICTLTELVSMWNLTRVEIQLCNMLSPEGPQDSLRSYNWGLVFVAVLVDNFL-YPISAI 419
           LLIC + + + + N + +     N + P G + S  SY    + + +LV ++L   +S  
Sbjct: 121 LLICRMIKGMILGNFSILVASYANEVIPRGKRGSTMSYIQLCLTIGILVMHYLCIALSLW 180

Query: 418 RSHFSQSINW 389
            SHF+  I W
Sbjct: 181 DSHFAFRIAW 190

>YDDA_ECOLI (P31826) Inner membrane ABC transporter ATP-binding protein yddA|
           (CDS102)
          Length = 561

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +1

Query: 94  ITNQ*TINKPKEKKNKTQVYNTTPHKIEDRIPLGILRHHTSSAGAIGLGLWTGSRATTFQ 273
           +T Q   NKPK  ++  QV + +    +++I L  L  H S    + L  ++G+  TT  
Sbjct: 351 LTEQRPTNKPKNCQHAVQVADASIRTPDNKIILENLNFHVSPGKWLLLKGYSGAGKTTLL 410

Query: 274 QGMSSC 291
           + +S C
Sbjct: 411 KTLSHC 416

>Y507_PASMU (Q9CNC5) Hypothetical protein PM0507|
          Length = 399

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 22/75 (29%), Positives = 31/75 (41%)
 Frame = -2

Query: 700 YVMALVHIATTLRAPYSAIVKEAAESSCGLKLVSFLLICTLTELVSMWNLTRVEIQLCNM 521
           Y + L  IATTL  PY  +V           +    ++ TL  ++S+  LT  EIQ   +
Sbjct: 318 YYIVLFLIATTLVVPYLILVNYLFYHGQNKSISICSVLTTLIYVISLLGLTLTEIQFVPL 377

Query: 520 LSPEGPQDSLRSYNW 476
            S  G    L    W
Sbjct: 378 ASIIGAVSILPVLYW 392

>NU4M_METSE (O47497) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 491

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = -2

Query: 589 ICTLTELVSMWNLTRVEIQLCNMLSPEGPQDSLRSYNWGLVFVAV-LVDNFLYPISAIRS 413
           + TLT  + +W    +E Q   +   E       ++ WG +F+AV  +  F   ++A+ +
Sbjct: 42  LATLTATLILWAAFDMEGQFQTINQTEWIVPPALNFKWGPLFLAVDGISLFFLILTALLT 101

Query: 412 HFSQSINWSGIRYYLRD 362
                I+W+ I++ L++
Sbjct: 102 PICILISWNSIKFLLKE 118

>Y4386_RHILO (Q98E66) Hypothetical UPF0187 protein mll4386|
          Length = 309

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 206 CLRMPSGILSSILWGVVLYTCVLFFFSFGL 117
           CL +P G++S+  W   L+T ++ +  FGL
Sbjct: 229 CLLLPIGLISTTGWATPLFTALIAYTFFGL 258

>YORM_TTV1 (P19297) Hypothetical 38.6 kDa protein|
          Length = 352

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 268 FQQGMSSCHRDASHRDRCTSNC 333
           FQQ +SSC++  S R +C +NC
Sbjct: 283 FQQCISSCYQQTSGRTQCINNC 304

>METK_MYCGE (P47293) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase) (MAT)
          Length = 383

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
 Frame = -2

Query: 571 LVSMWNLTRVEIQLCNMLSPEGPQD-SLRSYNWGLVFVAVLVDNFLYPISAIRSHFSQSI 395
           +VS+   +  E+ +  + S   PQ  +++ +N  + +  VL++        + ++F    
Sbjct: 282 IVSLGWASECEVSISWVFSKPNPQSITVKCFNTNIQYDEVLINR------VVNNYF---- 331

Query: 394 NWSGIRYYLRDGKISKIERENSSKYTDLGGKHLYGKRTYPAGKSLLGYLSISLAQWHQPK 215
           NWS  +       I K++  +  KY+D                ++ G+    L+ W QP 
Sbjct: 332 NWSITKI------IDKLKLLDFVKYSDY---------------AVYGHFGNDLSPWEQPT 370

Query: 214 KYDV*ECLVES 182
           + D  ECL+++
Sbjct: 371 ELDKLECLIKN 381


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,855,232
Number of Sequences: 219361
Number of extensions: 2303818
Number of successful extensions: 6426
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6419
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7026286028
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)