>AROK_SYNY3 (P72796) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 189

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 14/153 (9%)
 Frame = -1

Query: 692 ITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVD 513
           I + L G+++ ++G        V   +AE +GY       L+E    K++    A +G D
Sbjct: 6   IKEQLQGVNLFLIGMMGSGKSTVGPLLAEQLGYRFFDADVLIERVAGKAIADIFAEDGED 65

Query: 512 SVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVS-------EA 354
           +  + E  VL  L++  R+V+AT GG      R   W YLH G  +WL  S         
Sbjct: 66  TFRDLETEVLGHLAAQTRSVIATGGG---VVLRRQNWSYLHHGLVIWLDGSLELLLARLQ 122

Query: 353 GDEA-------SAKEEARRSVSTGSVAYAKADV 276
           GDEA       + +E     ++     YA+AD+
Sbjct: 123 GDEARPLLQVENLEERLGNLLAQRQPLYAQADL 155

>AROK_ANASP (Q8YXG9) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 181

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
 Frame = -1

Query: 692 ITQLLTGISIHIVG----DSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAA 525
           ++ LL G++++++G      T +   +AKE+  G G+L   T  ++  AT+KS++   A 
Sbjct: 1   MSSLLQGVNLYLIGMMGAGKTTVGHLLAKEL--GYGFLD--TDNVIAQATKKSINEIFAE 56

Query: 524 EGVDSVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV 363
            G     + E  VL  + S+ +  VAT G   G   R + W YLH G  +WL V
Sbjct: 57  AGEAGFRQIESDVLAQVCSYTKLTVATGG---GIVLRRENWSYLHHGLILWLDV 107

>AROK_SYNEL (Q8DKH7) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 183

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 35/110 (31%), Positives = 52/110 (47%)
 Frame = -1

Query: 692 ITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVD 513
           + + L G +I++VG          + +A+ +GY  V T  ++ +  Q+ +    A EG  
Sbjct: 3   LQERLGGANIYLVGMMGAGKTTTGRLLAQRLGYSFVDTDAVITAFRQRPIREIFAQEGEP 62

Query: 512 SVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV 363
           +  E E  VL  +SS+   VVAT G   G       W YLH G  VWL V
Sbjct: 63  AFRELEQQVLAQVSSYHHLVVATGG---GIVLNPMNWSYLHHGIVVWLHV 109

>AROK_ARATH (Q9SJ05) Probable shikimate kinase, chloroplast precursor (EC|
           2.7.1.71)
          Length = 292

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
 Frame = -1

Query: 680 LTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQ-KSVDTWVAAEGVDSVA 504
           L G S+++VG        V K +++ +GY       L+E A    SV       G +   
Sbjct: 100 LNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFR 159

Query: 503 EAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV 363
             E   L+ LSS  + VV+T GG   A  R   W+Y+H G ++WL V
Sbjct: 160 GKETDALKKLSSRYQVVVSTGGG---AVIRPINWKYMHKGISIWLDV 203

>AROK_LYCES (Q00497) Shikimate kinase, chloroplast precursor (EC 2.7.1.71)|
          Length = 300

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
 Frame = -1

Query: 710 KSXTAGITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQK-SVDTW 534
           K+    + + L G  +++VG        V + +AE +GY       L+E A    +V   
Sbjct: 92  KNKAEEVEEYLDGRCVYLVGMMGCGKTTVGRILAETLGYSFFDCDRLIEQAVGGITVAEI 151

Query: 533 VAAEGVDSVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV 363
               G     + E  VL  LS   R VV+T GG   A  R   W+++H G +VWL V
Sbjct: 152 FELRGESFFRDNETEVLHKLSLMHRLVVSTGGG---AVVRPINWRHMHKGISVWLDV 205

>AROL_YERPE (Q8ZC15) Shikimate kinase 2 (EC 2.7.1.71) (Shikimate kinase II)|
           (SKII)
          Length = 174

 Score = 37.4 bits (85), Expect = 0.046
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
 Frame = -1

Query: 668 SIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAEAECV 489
           +I +VG        + K +A+ +GY  V T   ++  +Q +V   V +EG D     E +
Sbjct: 4   TIFMVGARGAGKTTIGKALAQALGYRFVDTDLFMQQTSQMTVAEVVESEGWDGFRLRESM 63

Query: 488 VLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVSE---AGDEASAKEEARR 318
            L+++++  +TVVAT GG     S  ++      G  ++L  S    A   A   EEA+R
Sbjct: 64  ALQAVTA-PKTVVATGGG--AVLSSENRAFMRDHGRVIYLRASAAVLAKRLAEDPEEAQR 120

Query: 317 SVSTG 303
              TG
Sbjct: 121 PSLTG 125

>SHC2_HUMAN (P98077) SHC transforming protein 2 (SH2 domain protein C2) (Src|
           homology 2 domain-containing transforming protein C2)
           (Protein Sck)
          Length = 551

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
 Frame = -1

Query: 671 ISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAEAEC 492
           ISIHI  D   ++    +++     ++P   S    S     +  +VA    D + +  C
Sbjct: 191 ISIHISTDGLSLSVPATRQVIAN-HHMP---SISFASGGDTDMTDYVAYVAKDPINQRAC 246

Query: 491 VVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVSE-AGDEASA 336
            +LE      +++++T+G  Q    RF   QYLHS   V L     AG E SA
Sbjct: 247 HILECCEGLAQSIISTVG--QAFELRFK--QYLHSPPKVALPPERLAGPEESA 295

>AMOL2_HUMAN (Q9Y2J4) Angiomotin-like protein 2 (Leman coiled-coil protein)|
           (LCCP)
          Length = 779

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +3

Query: 291 IGHAPSANASPGLLFGRGFITGLGHRQPHRESRMKVL 401
           I H+P    SP   F  G +TG GHR    ESR+KVL
Sbjct: 599 IRHSPQP--SPSSSFNEGLLTG-GHRHQEMESRLKVL 632

>AROL_ERWCH (P10880) Shikimate kinase 2 (EC 2.7.1.71) (Shikimate kinase II)|
           (SKII)
          Length = 173

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 25/77 (32%), Positives = 38/77 (49%)
 Frame = -1

Query: 665 IHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAEAECVV 486
           I +VG        V +E+A  +GY  V T   ++  +  +V   VAAEG       E   
Sbjct: 5   IFMVGARGCGKTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEA 64

Query: 485 LESLSSHVRTVVATLGG 435
           L+++++  R VVAT GG
Sbjct: 65  LQAVATPNR-VVATGGG 80

>ATG4_YARLI (Q6CH28) Probable cysteine protease ATG4 (EC 3.4.22.-)|
           (Autophagy-related protein 4)
          Length = 545

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 320 RSVSTGSVAYAKADVVVKLGGWDPE-YTQAVAQGCLVALKQLTLADKKL 177
           +S  +G++   K   +++ GG+DP  YT  V  GC++   Q  LA+  L
Sbjct: 86  KSDGSGTIHLGKLKNMIRGGGFDPRGYTSDVGWGCMIRTSQSLLANALL 134

>SYI_BACLD (Q65JV7) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 922

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 13/59 (22%)
 Frame = -1

Query: 260 GWDPE---YTQAVAQGCLVALKQLTLAD----------KKLAGKKSLYIRLGCRGDWPN 123
           GWD        A+ +   V  K++T+A+          +++ G+K+ + RLG RGDW N
Sbjct: 93  GWDTHGLPIETALTKNKKVKRKEMTVAEFRKLCEEYAWQQIEGQKAQFKRLGVRGDWEN 151

>SYI_PSEU2 (Q4ZYJ4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 943

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 191 ADKKLAGKKSLYIRLGCRGDWPN 123
           A +++ G+KS +IRLG  GDW N
Sbjct: 127 ASEQIEGQKSEFIRLGVLGDWSN 149

>SYI_PSE14 (Q48NK6) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 943

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 191 ADKKLAGKKSLYIRLGCRGDWPN 123
           A +++ G+KS +IRLG  GDW N
Sbjct: 127 ASEQIEGQKSEFIRLGVLGDWSN 149

>WDR54_HUMAN (Q9H977) WD-repeat protein 54|
          Length = 334

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +3

Query: 204 LQGNKAALCHSLRVLRVPSTQLHHHIRLRIGHAPSANASPGLLFGRGFITGLGHRQPHRE 383
           L+G+ AALC++L VL++P+  L +     + H PSA     LL        L  RQ H +
Sbjct: 10  LRGSAAALCNNLSVLQLPARNLTY---FGVVHGPSAQ----LLSAAPEGVPLAQRQLHAK 62

Query: 384 SRMKVLP 404
               V P
Sbjct: 63  EGAGVSP 69

>TPIS_ORYSA (P48494) Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM)|
           (Triose-phosphate isomerase)
          Length = 252

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
 Frame = -1

Query: 659 IVGDSTD-INEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAEAECVVL 483
           ++G+S + + + VA  +++G+  +  C  E LE     S         +D VA     + 
Sbjct: 101 LLGESNEFVGDKVAYALSQGLKVI-ACVGETLEQRESGST--------MDVVAAQTKAIS 151

Query: 482 ESLSSHVRTVVA-----TLGGKQGAASRFDKWQYLHSGFTVWLSVSEAGDEASAKEEARR 318
           E +      VVA      +G   G  +  D+ Q +H G   WL+ + + + A    E+ R
Sbjct: 152 ERIKDWTNVVVAYEPVWAIG--TGKVATPDQAQEVHDGLRKWLAANVSAEVA----ESTR 205

Query: 317 SVSTGSVAYA 288
            +  GSV  A
Sbjct: 206 IIYGGSVTGA 215

>CDKL2_RABIT (Q9TTK0) Cyclin-dependent kinase-like 2 (EC 2.7.11.22)|
           (Serine/threonine-protein kinase KKIAMRE)
          Length = 566

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
 Frame = +3

Query: 207 QGNKAALCHSL---RVLRVPSTQLHHHIRLRIGHAPSAN------------ASPGLLFGR 341
           +GN+AA+  ++    +  VPST L     + + H  +               +PG+  G 
Sbjct: 368 KGNRAAVSMTVGPSHIKAVPSTSLRDCSNVSVDHTRNPGMAIPPLTHNLSAVAPGINSGM 427

Query: 342 GFITGLGHRQPHRESRMKVLPFVEPARRS 428
           G I G+   +   +++   +PFV+P + S
Sbjct: 428 GTIPGVQSYRVDEKTKKYCIPFVKPNKHS 456

>CAR14_HUMAN (Q9BXL6) Caspase recruitment domain-containing protein 14|
            (CARD-containing MAGUK protein 2) (Carma 2)
          Length = 1004

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 24/75 (32%), Positives = 37/75 (49%)
 Frame = -1

Query: 671  ISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAEAEC 492
            I IH+      +NE +AK++ +G+  L     +LLE+A Q+  D   A     S+A    
Sbjct: 921  IVIHV-----SVNEKMAKKLKKGLQRLGTSEEQLLEAARQEEGDLDRAPCLYSSLAPDGW 975

Query: 491  VVLESLSSHVRTVVA 447
              L+ L S VR  +A
Sbjct: 976  SDLDGLLSCVRQAIA 990

>SYI_PSESM (Q889E4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 943

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 191 ADKKLAGKKSLYIRLGCRGDWPN 123
           A +++ G+KS +IRLG  GDW N
Sbjct: 127 AAEQIEGQKSEFIRLGVLGDWSN 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,499,791
Number of Sequences: 219361
Number of extensions: 1789261
Number of successful extensions: 5755
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5749
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7196276819
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)