No.
Definition
Score (bits)
E Value
1 dbj|AK100237.1| Oryza sativa (japonica cultivar-group) cDNA clon...
444
e-121
2 dbj|AK061718.1| Oryza sativa (japonica cultivar-group) cDNA clon...
444
e-121
3 ref|NM_197895.1| Oryza sativa (japonica cultivar-group) unknown ...
297
3e-77
4 gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 geno...
125
2e-25
5 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
125
2e-25
6 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
125
2e-25
7 gb|AC142098.2| Mus musculus BAC clone RP24-458F14 from chromosom...
44
0.62
8 gb|BC004722.1| Mus musculus metastasis associated lung adenocarc...
44
0.62
9 gb|BC094333.1| Mus musculus metastasis associated lung adenocarc...
44
0.62
10 gb|BT017350.1| Zea mays clone EL01N0323G09.c mRNA sequence
42
2.5
11 gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster...
42
2.5
12 gb|AC161178.16| Mus musculus chromosome 1, clone RP23-9F16, comp...
40
9.7
13 gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
40
9.7
14 gb|AC163622.4| Mus musculus BAC clone RP24-566G6 from chromosome...
40
9.7
15 gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome...
40
9.7
16 gb|AC138739.8| Mus musculus chromosome 9, clone RP23-380A10, com...
40
9.7
17 emb|AL162713.19| Human DNA sequence from clone RP11-168P13 on ch...
40
9.7
18 gb|AC157553.10| Mus musculus chromosome 7, clone RP24-68L4, comp...
40
9.7
19 gb|AC151827.5| Mus musculus BAC clone RP24-453P17 from chromosom...
40
9.7
20 gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosom...
40
9.7
21 gb|AC147580.3| Otolemur garnettii clone CH256-323C23, complete s...
40
9.7
22 gb|AC084048.5| Homo sapiens BAC clone RP11-61G19 from 4, complet...
40
9.7
23 gb|AC068491.4| Homo sapiens BAC clone RP11-803D5 from 2, complet...
40
9.7
24 gb|AC069018.17|AC069018 Mus musculus BAC MGS3-563C15 (Genome Sy...
40
9.7
25 gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromoso...
40
9.7
26 gb|AC093616.5| Homo sapiens BAC clone RP13-511M20 from 2, comple...
40
9.7
27 gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
40
9.7
28 emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on ch...
40
9.7
>gb|AC027037.6 | Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete
sequence
Length = 64582
Score = 125 bits (63), Expect = 2e-25
Identities = 150/179 (83%)
Strand = Plus / Minus
Query: 172 cctgctagcttcttatctgccaaggtgagctgcttcaaggcaacaaggcagccctgtgcc 231
|||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| ||
Sbjct: 29818 cctgctagcttcttgtctgccaatgttagctgcttcaaggccacaaggcaaccctgggca 29759
Query: 232 acagcttgcgtgtactccgggtcccatccacccagcttcaccaccacatccgccttcgca 291
|||||| | ||||||||||| ||||||||||| |||||||| || ||||| || |||||
Sbjct: 29758 acagctcgtgtgtactccggatcccatccaccaagcttcactactacatcagctttcgcg 29699
Query: 292 taggccacgctcccagtgctaacgcttctcctggcctcctctttggcagaggcttcatc 350
|| || || | || | ||| || ||||| | |||||| ||||||||||| ||||||||
Sbjct: 29698 tacgcaacatttcccgagctcacacttctacgggcctcttctttggcagaagcttcatc 29640
Score = 101 bits (51), Expect = 3e-18
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 358 tcggacaccgacaaccacaccgtgaatccagaatgaaggtactgccatttgtcgaacctg 417
||||| ||||||||||| ||||| ||||||| |||||| ||||||||||| || || |||
Sbjct: 29489 tcggagaccgacaaccaaaccgtaaatccagcatgaagatactgccatttatcaaatctg 29430
Query: 418 ctcgccgctccttgcttgccacccagagtcgctaccacggtacggacatggctgc 472
|| || ||||||||||| || |||||||| ||||| || ||||| ||||||||||
Sbjct: 29429 ctagctgctccttgctttccccccagagttgctacgactgtacgaacatggctgc 29375
Score = 89.7 bits (45), Expect = 1e-14
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 99 aggatcccagccgggtggctcgatgttgggccagtcccctcgacagcctagcctgatgta 158
||||||||||||||| ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 30048 aggatcccagccgggaggctcgatgttgggccaatcccctcggcatcccagcctcatgta 29989
Query: 159 aaggctcttcttccctg 175
||||||||||| ||||
Sbjct: 29988 taggctcttcttacctg 29972
Score = 65.9 bits (33), Expect = 2e-07
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 594 atacccgatgccctcagcaatctctttagcgaccgcctcgttgatatccgtggaatctcc 653
|||||| || |||||||| || |||||||| || |||||||| ||||| |||||||| ||
Sbjct: 28786 atacccaattccctcagctatttctttagcaactgcctcgtttatatctgtggaatcacc 28727
Query: 654 aactatgtgaatgctgatccctgtcaataactgtgtgatcccagcagtganggatt 709
||| || |||| || ||||||||||| | ||| ||||| |||| ||| | |||||
Sbjct: 28726 aacaatatgaacactaatccctgtcaaaagctgagtgattccagaagtaagggatt 28671
Score = 63.9 bits (32), Expect = 7e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 469 ctgctaaggctttctaggacaacacattccgcttcagctactgagtccaccccttccgca 528
|||||||||||||| || ||||||||||| ||||| ||||| || ||||| ||||||| |
Sbjct: 29294 ctgctaaggctttccagcacaacacattcagcttctgctaccgaatccactccttccgaa 29235
Query: 529 gcca 532
||||
Sbjct: 29234 gcca 29231
Score = 54.0 bits (27), Expect = 6e-04
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 547 gacttttgagtggcactctctagcagctcactggtgcaaactggaag 593
||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 29087 gacttttcggtggcactttctagcagctcacttgtgcagactggaag 29041
>dbj|AP008216.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 125 bits (63), Expect = 2e-25
Identities = 150/179 (83%)
Strand = Plus / Minus
Query: 172 cctgctagcttcttatctgccaaggtgagctgcttcaaggcaacaaggcagccctgtgcc 231
|||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| ||
Sbjct: 22514100 cctgctagcttcttgtctgccaatgttagctgcttcaaggccacaaggcaaccctgggca 22514041
Query: 232 acagcttgcgtgtactccgggtcccatccacccagcttcaccaccacatccgccttcgca 291
|||||| | ||||||||||| ||||||||||| |||||||| || ||||| || |||||
Sbjct: 22514040 acagctcgtgtgtactccggatcccatccaccaagcttcactactacatcagctttcgcg 22513981
Query: 292 taggccacgctcccagtgctaacgcttctcctggcctcctctttggcagaggcttcatc 350
|| || || | || | ||| || ||||| | |||||| ||||||||||| ||||||||
Sbjct: 22513980 tacgcaacatttcccgagctcacacttctacgggcctcttctttggcagaagcttcatc 22513922
Score = 101 bits (51), Expect = 3e-18
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 358 tcggacaccgacaaccacaccgtgaatccagaatgaaggtactgccatttgtcgaacctg 417
||||| ||||||||||| ||||| ||||||| |||||| ||||||||||| || || |||
Sbjct: 22513771 tcggagaccgacaaccaaaccgtaaatccagcatgaagatactgccatttatcaaatctg 22513712
Query: 418 ctcgccgctccttgcttgccacccagagtcgctaccacggtacggacatggctgc 472
|| || ||||||||||| || |||||||| ||||| || ||||| ||||||||||
Sbjct: 22513711 ctagctgctccttgctttccccccagagttgctacgactgtacgaacatggctgc 22513657
Score = 89.7 bits (45), Expect = 1e-14
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 99 aggatcccagccgggtggctcgatgttgggccagtcccctcgacagcctagcctgatgta 158
||||||||||||||| ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 22514330 aggatcccagccgggaggctcgatgttgggccaatcccctcggcatcccagcctcatgta 22514271
Query: 159 aaggctcttcttccctg 175
||||||||||| ||||
Sbjct: 22514270 taggctcttcttacctg 22514254
Score = 65.9 bits (33), Expect = 2e-07
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 594 atacccgatgccctcagcaatctctttagcgaccgcctcgttgatatccgtggaatctcc 653
|||||| || |||||||| || |||||||| || |||||||| ||||| |||||||| ||
Sbjct: 22513068 atacccaattccctcagctatttctttagcaactgcctcgtttatatctgtggaatcacc 22513009
Query: 654 aactatgtgaatgctgatccctgtcaataactgtgtgatcccagcagtganggatt 709
||| || |||| || ||||||||||| | ||| ||||| |||| ||| | |||||
Sbjct: 22513008 aacaatatgaacactaatccctgtcaaaagctgagtgattccagaagtaagggatt 22512953
Score = 63.9 bits (32), Expect = 7e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 469 ctgctaaggctttctaggacaacacattccgcttcagctactgagtccaccccttccgca 528
|||||||||||||| || ||||||||||| ||||| ||||| || ||||| ||||||| |
Sbjct: 22513576 ctgctaaggctttccagcacaacacattcagcttctgctaccgaatccactccttccgaa 22513517
Query: 529 gcca 532
||||
Sbjct: 22513516 gcca 22513513
Score = 54.0 bits (27), Expect = 6e-04
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 547 gacttttgagtggcactctctagcagctcactggtgcaaactggaag 593
||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 22513369 gacttttcggtggcactttctagcagctcacttgtgcagactggaag 22513323
>gb|AE016959.3 | Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 125 bits (63), Expect = 2e-25
Identities = 150/179 (83%)
Strand = Plus / Minus
Query: 172 cctgctagcttcttatctgccaaggtgagctgcttcaaggcaacaaggcagccctgtgcc 231
|||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| ||
Sbjct: 22526568 cctgctagcttcttgtctgccaatgttagctgcttcaaggccacaaggcaaccctgggca 22526509
Query: 232 acagcttgcgtgtactccgggtcccatccacccagcttcaccaccacatccgccttcgca 291
|||||| | ||||||||||| ||||||||||| |||||||| || ||||| || |||||
Sbjct: 22526508 acagctcgtgtgtactccggatcccatccaccaagcttcactactacatcagctttcgcg 22526449
Query: 292 taggccacgctcccagtgctaacgcttctcctggcctcctctttggcagaggcttcatc 350
|| || || | || | ||| || ||||| | |||||| ||||||||||| ||||||||
Sbjct: 22526448 tacgcaacatttcccgagctcacacttctacgggcctcttctttggcagaagcttcatc 22526390
Score = 101 bits (51), Expect = 3e-18
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 358 tcggacaccgacaaccacaccgtgaatccagaatgaaggtactgccatttgtcgaacctg 417
||||| ||||||||||| ||||| ||||||| |||||| ||||||||||| || || |||
Sbjct: 22526239 tcggagaccgacaaccaaaccgtaaatccagcatgaagatactgccatttatcaaatctg 22526180
Query: 418 ctcgccgctccttgcttgccacccagagtcgctaccacggtacggacatggctgc 472
|| || ||||||||||| || |||||||| ||||| || ||||| ||||||||||
Sbjct: 22526179 ctagctgctccttgctttccccccagagttgctacgactgtacgaacatggctgc 22526125
Score = 89.7 bits (45), Expect = 1e-14
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 99 aggatcccagccgggtggctcgatgttgggccagtcccctcgacagcctagcctgatgta 158
||||||||||||||| ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 22526798 aggatcccagccgggaggctcgatgttgggccaatcccctcggcatcccagcctcatgta 22526739
Query: 159 aaggctcttcttccctg 175
||||||||||| ||||
Sbjct: 22526738 taggctcttcttacctg 22526722
Score = 65.9 bits (33), Expect = 2e-07
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 594 atacccgatgccctcagcaatctctttagcgaccgcctcgttgatatccgtggaatctcc 653
|||||| || |||||||| || |||||||| || |||||||| ||||| |||||||| ||
Sbjct: 22525536 atacccaattccctcagctatttctttagcaactgcctcgtttatatctgtggaatcacc 22525477
Query: 654 aactatgtgaatgctgatccctgtcaataactgtgtgatcccagcagtganggatt 709
||| || |||| || ||||||||||| | ||| ||||| |||| ||| | |||||
Sbjct: 22525476 aacaatatgaacactaatccctgtcaaaagctgagtgattccagaagtaagggatt 22525421
Score = 63.9 bits (32), Expect = 7e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 469 ctgctaaggctttctaggacaacacattccgcttcagctactgagtccaccccttccgca 528
|||||||||||||| || ||||||||||| ||||| ||||| || ||||| ||||||| |
Sbjct: 22526044 ctgctaaggctttccagcacaacacattcagcttctgctaccgaatccactccttccgaa 22525985
Query: 529 gcca 532
||||
Sbjct: 22525984 gcca 22525981
Score = 54.0 bits (27), Expect = 6e-04
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 547 gacttttgagtggcactctctagcagctcactggtgcaaactggaag 593
||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 22525837 gacttttcggtggcactttctagcagctcacttgtgcagactggaag 22525791
>emb|CT025626.11 | Mouse DNA sequence from clone RP24-141G14 on chromosome 14, complete
sequence
Length = 201441
Score = 40.1 bits (20), Expect = 9.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 312 aacgcttctcctggcctcctcttt 335
||||||| ||||||||||||||||
Sbjct: 138791 aacgcttgtcctggcctcctcttt 138814
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,905,371
Number of Sequences: 3902068
Number of extensions: 4905371
Number of successful extensions: 92602
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92487
Number of HSP's gapped (non-prelim): 109
length of query: 710
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 687
effective length of database: 17,143,297,704
effective search space: 11777445522648
effective search space used: 11777445522648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)