ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18j03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK100237.1| Oryza sativa (japonica cultivar-group) cDNA clon... 444 e-121
2dbj|AK061718.1| Oryza sativa (japonica cultivar-group) cDNA clon... 444 e-121
3ref|NM_197895.1| Oryza sativa (japonica cultivar-group) unknown ... 297 3e-77
4gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 geno... 125 2e-25
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 125 2e-25
7gb|AC142098.2| Mus musculus BAC clone RP24-458F14 from chromosom... 44 0.62
8gb|BC004722.1| Mus musculus metastasis associated lung adenocarc... 44 0.62
9gb|BC094333.1| Mus musculus metastasis associated lung adenocarc... 44 0.62
10gb|BT017350.1| Zea mays clone EL01N0323G09.c mRNA sequence 42 2.5
11gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster... 42 2.5
12gb|AC161178.16| Mus musculus chromosome 1, clone RP23-9F16, comp... 40 9.7
13gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 40 9.7
14gb|AC163622.4| Mus musculus BAC clone RP24-566G6 from chromosome... 40 9.7
15gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome... 40 9.7
16gb|AC138739.8| Mus musculus chromosome 9, clone RP23-380A10, com... 40 9.7
17emb|AL162713.19| Human DNA sequence from clone RP11-168P13 on ch... 40 9.7
18gb|AC157553.10| Mus musculus chromosome 7, clone RP24-68L4, comp... 40 9.7
19gb|AC151827.5| Mus musculus BAC clone RP24-453P17 from chromosom... 40 9.7
20gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosom... 40 9.7
21gb|AC147580.3| Otolemur garnettii clone CH256-323C23, complete s... 40 9.7
22gb|AC084048.5| Homo sapiens BAC clone RP11-61G19 from 4, complet... 40 9.7
23gb|AC068491.4| Homo sapiens BAC clone RP11-803D5 from 2, complet... 40 9.7
24gb|AC069018.17|AC069018 Mus musculus BAC MGS3-563C15 (Genome Sy... 40 9.7
25gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromoso... 40 9.7
26gb|AC093616.5| Homo sapiens BAC clone RP13-511M20 from 2, comple... 40 9.7
27gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 9.7
28emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on ch... 40 9.7

>dbj|AK100237.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052F21, full
            insert sequence
          Length = 1551

 Score =  444 bits (224), Expect = e-121
 Identities = 514/611 (84%)
 Strand = Plus / Minus

                                                                        
Query: 99   aggatcccagccgggtggctcgatgttgggccagtcccctcgacagcctagcctgatgta 158
            ||||||||||||||| ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 1184 aggatcccagccgggaggctcgatgttgggccaatcccctcggcatcccagcctcatgta 1125

                                                                        
Query: 159  aaggctcttcttccctgctagcttcttatctgccaaggtgagctgcttcaaggcaacaag 218
             ||||||||||| |||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct: 1124 taggctcttcttacctgctagcttcttgtctgccaatgttagctgcttcaaggccacaag 1065

                                                                        
Query: 219  gcagccctgtgccacagcttgcgtgtactccgggtcccatccacccagcttcaccaccac 278
            ||| ||||| || |||||| | ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 1064 gcaaccctgggcaacagctcgtgtgtactccggatcccatccaccaagcttcactactac 1005

                                                                        
Query: 279  atccgccttcgcataggccacgctcccagtgctaacgcttctcctggcctcctctttggc 338
            ||| || ||||| || || ||  | || | ||| || ||||| | |||||| ||||||||
Sbjct: 1004 atcagctttcgcgtacgcaacatttcccgagctcacacttctacgggcctcttctttggc 945

                                                                        
Query: 339  agaggcttcatcaccggcctcggacaccgacaaccacaccgtgaatccagaatgaaggta 398
            ||| |||||||| | ||| ||||| ||||||||||| ||||| ||||||| |||||| ||
Sbjct: 944  agaagcttcatcgctggcatcggagaccgacaaccaaaccgtaaatccagcatgaagata 885

                                                                        
Query: 399  ctgccatttgtcgaacctgctcgccgctccttgcttgccacccagagtcgctaccacggt 458
            ||||||||| || || ||||| || ||||||||||| || |||||||| ||||| || ||
Sbjct: 884  ctgccatttatcaaatctgctagctgctccttgctttccccccagagttgctacgactgt 825

                                                                        
Query: 459  acggacatggctgctaaggctttctaggacaacacattccgcttcagctactgagtccac 518
            ||| |||||||||||||||||||| || ||||||||||| ||||| ||||| || |||||
Sbjct: 824  acgaacatggctgctaaggctttccagcacaacacattcagcttctgctaccgaatccac 765

                                                                        
Query: 519  cccttccgcagccacccatgtatcaacggacttttgagtggcactctctagcagctcact 578
             ||||||| ||||| |||| | ||||  |||||||  |||||||| ||||||||||||||
Sbjct: 764  tccttccgaagccaaccatttgtcaatagacttttcggtggcactttctagcagctcact 705

                                                                        
Query: 579  ggtgcaaactggaagatacccgatgccctcagcaatctctttagcgaccgcctcgttgat 638
             ||||| |||||||| || || || |||||||| || |||||||| || |||||||| ||
Sbjct: 704  tgtgcagactggaaggtaaccaattccctcagctatttctttagcaactgcctcgtttat 645

                                                                        
Query: 639  atccgtggaatctccaactatgtgaatgctgatccctgtcaataactgtgtgatcccagc 698
            ||| |||||||| ||||| || ||||  || ||||||||||| | ||| ||||| |||| 
Sbjct: 644  atctgtggaatcaccaacaatatgaacactaatccctgtcaaaagctgagtgattccaga 585

                       
Query: 699  agtganggatt 709
            ||| | |||||
Sbjct: 584  agtaagggatt 574



to top

>dbj|AK061718.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H11, full
            insert sequence
          Length = 1457

 Score =  444 bits (224), Expect = e-121
 Identities = 514/611 (84%)
 Strand = Plus / Minus

                                                                        
Query: 99   aggatcccagccgggtggctcgatgttgggccagtcccctcgacagcctagcctgatgta 158
            ||||||||||||||| ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 1201 aggatcccagccgggaggctcgatgttgggccaatcccctcggcatcccagcctcatgta 1142

                                                                        
Query: 159  aaggctcttcttccctgctagcttcttatctgccaaggtgagctgcttcaaggcaacaag 218
             ||||||||||| |||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct: 1141 taggctcttcttacctgctagcttcttgtctgccaatgttagctgcttcaaggccacaag 1082

                                                                        
Query: 219  gcagccctgtgccacagcttgcgtgtactccgggtcccatccacccagcttcaccaccac 278
            ||| ||||| || |||||| | ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 1081 gcaaccctgggcaacagctcgtgtgtactccggatcccatccaccaagcttcactactac 1022

                                                                        
Query: 279  atccgccttcgcataggccacgctcccagtgctaacgcttctcctggcctcctctttggc 338
            ||| || ||||| || || ||  | || | ||| || ||||| | |||||| ||||||||
Sbjct: 1021 atcagctttcgcgtacgcaacatttcccgagctcacacttctacgggcctcttctttggc 962

                                                                        
Query: 339  agaggcttcatcaccggcctcggacaccgacaaccacaccgtgaatccagaatgaaggta 398
            ||| |||||||| | ||| ||||| ||||||||||| ||||| ||||||| |||||| ||
Sbjct: 961  agaagcttcatcgctggcatcggagaccgacaaccaaaccgtaaatccagcatgaagata 902

                                                                        
Query: 399  ctgccatttgtcgaacctgctcgccgctccttgcttgccacccagagtcgctaccacggt 458
            ||||||||| || || ||||| || ||||||||||| || |||||||| ||||| || ||
Sbjct: 901  ctgccatttatcaaatctgctagctgctccttgctttccccccagagttgctacgactgt 842

                                                                        
Query: 459  acggacatggctgctaaggctttctaggacaacacattccgcttcagctactgagtccac 518
            ||| |||||||||||||||||||| || ||||||||||| ||||| ||||| || |||||
Sbjct: 841  acgaacatggctgctaaggctttccagcacaacacattcagcttctgctaccgaatccac 782

                                                                        
Query: 519  cccttccgcagccacccatgtatcaacggacttttgagtggcactctctagcagctcact 578
             ||||||| ||||| |||| | ||||  |||||||  |||||||| ||||||||||||||
Sbjct: 781  tccttccgaagccaaccatttgtcaatagacttttcggtggcactttctagcagctcact 722

                                                                        
Query: 579  ggtgcaaactggaagatacccgatgccctcagcaatctctttagcgaccgcctcgttgat 638
             ||||| |||||||| || || || |||||||| || |||||||| || |||||||| ||
Sbjct: 721  tgtgcagactggaaggtaaccaattccctcagctatttctttagcaactgcctcgtttat 662

                                                                        
Query: 639  atccgtggaatctccaactatgtgaatgctgatccctgtcaataactgtgtgatcccagc 698
            ||| |||||||| ||||| || ||||  || ||||||||||| | ||| ||||| |||| 
Sbjct: 661  atctgtggaatcaccaacaatatgaacactaatccctgtcaaaagctgagtgattccaga 602

                       
Query: 699  agtganggatt 709
            ||| | |||||
Sbjct: 601  agtaagggatt 591



to top

>ref|NM_197895.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0035H01.3), mRNA
          Length = 1235

 Score =  297 bits (150), Expect = 3e-77
 Identities = 318/374 (85%)
 Strand = Plus / Minus

                                                                       
Query: 99  aggatcccagccgggtggctcgatgttgggccagtcccctcgacagcctagcctgatgta 158
           ||||||||||||||| ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 981 aggatcccagccgggaggctcgatgttgggccaatcccctcggcatcccagcctcatgta 922

                                                                       
Query: 159 aaggctcttcttccctgctagcttcttatctgccaaggtgagctgcttcaaggcaacaag 218
            ||||||||||| |||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct: 921 taggctcttcttacctgctagcttcttgtctgccaatgttagctgcttcaaggccacaag 862

                                                                       
Query: 219 gcagccctgtgccacagcttgcgtgtactccgggtcccatccacccagcttcaccaccac 278
           ||| ||||| || |||||| | ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 861 gcaaccctgggcaacagctcgtgtgtactccggatcccatccaccaagcttcactactac 802

                                                                       
Query: 279 atccgccttcgcataggccacgctcccagtgctaacgcttctcctggcctcctctttggc 338
           ||| || ||||| || || ||  | || | ||| || ||||| | |||||| ||||||||
Sbjct: 801 atcagctttcgcgtacgcaacatttcccgagctcacacttctacgggcctcttctttggc 742

                                                                       
Query: 339 agaggcttcatcaccggcctcggacaccgacaaccacaccgtgaatccagaatgaaggta 398
           ||| |||||||| | ||| ||||| ||||||||||| ||||| ||||||| |||||| ||
Sbjct: 741 agaagcttcatcgctggcatcggagaccgacaaccaaaccgtaaatccagcatgaagata 682

                                                                       
Query: 399 ctgccatttgtcgaacctgctcgccgctccttgcttgccacccagagtcgctaccacggt 458
           ||||||||| || || ||||| || ||||||||||| || |||||||| ||||| || ||
Sbjct: 681 ctgccatttatcaaatctgctagctgctccttgctttccccccagagttgctacgactgt 622

                         
Query: 459 acggacatggctgc 472
           ||| ||||||||||
Sbjct: 621 acgaacatggctgc 608



 Score =  155 bits (78), Expect = 2e-34
 Identities = 200/241 (82%)
 Strand = Plus / Minus

                                                                       
Query: 469 ctgctaaggctttctaggacaacacattccgcttcagctactgagtccaccccttccgca 528
           |||||||||||||| || ||||||||||| ||||| ||||| || ||||| ||||||| |
Sbjct: 527 ctgctaaggctttccagcacaacacattcagcttctgctaccgaatccactccttccgaa 468

                                                                       
Query: 529 gccacccatgtatcaacggacttttgagtggcactctctagcagctcactggtgcaaact 588
           |||| |||| | ||||  |||||||  |||||||| |||||||||||||| ||||| |||
Sbjct: 467 gccaaccatttgtcaatagacttttcggtggcactttctagcagctcacttgtgcagact 408

                                                                       
Query: 589 ggaagatacccgatgccctcagcaatctctttagcgaccgcctcgttgatatccgtggaa 648
           ||||| || || || |||||||| || |||||||| || |||||||| ||||| ||||||
Sbjct: 407 ggaaggtaaccaattccctcagctatttctttagcaactgcctcgtttatatctgtggaa 348

                                                                       
Query: 649 tctccaactatgtgaatgctgatccctgtcaataactgtgtgatcccagcagtganggat 708
           || ||||| || ||||  || ||||||||||| | ||| ||||| |||| ||| | ||||
Sbjct: 347 tcaccaacaatatgaacactaatccctgtcaaaagctgagtgattccagaagtaagggat 288

            
Query: 709 t 709
           |
Sbjct: 287 t 287



to top

>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete
             sequence
          Length = 64582

 Score =  125 bits (63), Expect = 2e-25
 Identities = 150/179 (83%)
 Strand = Plus / Minus

                                                                         
Query: 172   cctgctagcttcttatctgccaaggtgagctgcttcaaggcaacaaggcagccctgtgcc 231
             |||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| || 
Sbjct: 29818 cctgctagcttcttgtctgccaatgttagctgcttcaaggccacaaggcaaccctgggca 29759

                                                                         
Query: 232   acagcttgcgtgtactccgggtcccatccacccagcttcaccaccacatccgccttcgca 291
             |||||| | ||||||||||| ||||||||||| |||||||| || ||||| || ||||| 
Sbjct: 29758 acagctcgtgtgtactccggatcccatccaccaagcttcactactacatcagctttcgcg 29699

                                                                        
Query: 292   taggccacgctcccagtgctaacgcttctcctggcctcctctttggcagaggcttcatc 350
             || || ||  | || | ||| || ||||| | |||||| ||||||||||| ||||||||
Sbjct: 29698 tacgcaacatttcccgagctcacacttctacgggcctcttctttggcagaagcttcatc 29640



 Score =  101 bits (51), Expect = 3e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                         
Query: 358   tcggacaccgacaaccacaccgtgaatccagaatgaaggtactgccatttgtcgaacctg 417
             ||||| ||||||||||| ||||| ||||||| |||||| ||||||||||| || || |||
Sbjct: 29489 tcggagaccgacaaccaaaccgtaaatccagcatgaagatactgccatttatcaaatctg 29430

                                                                    
Query: 418   ctcgccgctccttgcttgccacccagagtcgctaccacggtacggacatggctgc 472
             || || ||||||||||| || |||||||| ||||| || ||||| ||||||||||
Sbjct: 29429 ctagctgctccttgctttccccccagagttgctacgactgtacgaacatggctgc 29375



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                         
Query: 99    aggatcccagccgggtggctcgatgttgggccagtcccctcgacagcctagcctgatgta 158
             ||||||||||||||| ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 30048 aggatcccagccgggaggctcgatgttgggccaatcccctcggcatcccagcctcatgta 29989

                              
Query: 159   aaggctcttcttccctg 175
              ||||||||||| ||||
Sbjct: 29988 taggctcttcttacctg 29972



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 95/116 (81%)
 Strand = Plus / Minus

                                                                         
Query: 594   atacccgatgccctcagcaatctctttagcgaccgcctcgttgatatccgtggaatctcc 653
             |||||| || |||||||| || |||||||| || |||||||| ||||| |||||||| ||
Sbjct: 28786 atacccaattccctcagctatttctttagcaactgcctcgtttatatctgtggaatcacc 28727

                                                                     
Query: 654   aactatgtgaatgctgatccctgtcaataactgtgtgatcccagcagtganggatt 709
             ||| || ||||  || ||||||||||| | ||| ||||| |||| ||| | |||||
Sbjct: 28726 aacaatatgaacactaatccctgtcaaaagctgagtgattccagaagtaagggatt 28671



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                         
Query: 469   ctgctaaggctttctaggacaacacattccgcttcagctactgagtccaccccttccgca 528
             |||||||||||||| || ||||||||||| ||||| ||||| || ||||| ||||||| |
Sbjct: 29294 ctgctaaggctttccagcacaacacattcagcttctgctaccgaatccactccttccgaa 29235

                 
Query: 529   gcca 532
             ||||
Sbjct: 29234 gcca 29231



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 547   gacttttgagtggcactctctagcagctcactggtgcaaactggaag 593
             |||||||  |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 29087 gacttttcggtggcactttctagcagctcacttgtgcagactggaag 29041



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  125 bits (63), Expect = 2e-25
 Identities = 150/179 (83%)
 Strand = Plus / Minus

                                                                            
Query: 172      cctgctagcttcttatctgccaaggtgagctgcttcaaggcaacaaggcagccctgtgcc 231
                |||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| || 
Sbjct: 22514100 cctgctagcttcttgtctgccaatgttagctgcttcaaggccacaaggcaaccctgggca 22514041

                                                                            
Query: 232      acagcttgcgtgtactccgggtcccatccacccagcttcaccaccacatccgccttcgca 291
                |||||| | ||||||||||| ||||||||||| |||||||| || ||||| || ||||| 
Sbjct: 22514040 acagctcgtgtgtactccggatcccatccaccaagcttcactactacatcagctttcgcg 22513981

                                                                           
Query: 292      taggccacgctcccagtgctaacgcttctcctggcctcctctttggcagaggcttcatc 350
                || || ||  | || | ||| || ||||| | |||||| ||||||||||| ||||||||
Sbjct: 22513980 tacgcaacatttcccgagctcacacttctacgggcctcttctttggcagaagcttcatc 22513922



 Score =  101 bits (51), Expect = 3e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                            
Query: 358      tcggacaccgacaaccacaccgtgaatccagaatgaaggtactgccatttgtcgaacctg 417
                ||||| ||||||||||| ||||| ||||||| |||||| ||||||||||| || || |||
Sbjct: 22513771 tcggagaccgacaaccaaaccgtaaatccagcatgaagatactgccatttatcaaatctg 22513712

                                                                       
Query: 418      ctcgccgctccttgcttgccacccagagtcgctaccacggtacggacatggctgc 472
                || || ||||||||||| || |||||||| ||||| || ||||| ||||||||||
Sbjct: 22513711 ctagctgctccttgctttccccccagagttgctacgactgtacgaacatggctgc 22513657



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                            
Query: 99       aggatcccagccgggtggctcgatgttgggccagtcccctcgacagcctagcctgatgta 158
                ||||||||||||||| ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 22514330 aggatcccagccgggaggctcgatgttgggccaatcccctcggcatcccagcctcatgta 22514271

                                 
Query: 159      aaggctcttcttccctg 175
                 ||||||||||| ||||
Sbjct: 22514270 taggctcttcttacctg 22514254



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 95/116 (81%)
 Strand = Plus / Minus

                                                                            
Query: 594      atacccgatgccctcagcaatctctttagcgaccgcctcgttgatatccgtggaatctcc 653
                |||||| || |||||||| || |||||||| || |||||||| ||||| |||||||| ||
Sbjct: 22513068 atacccaattccctcagctatttctttagcaactgcctcgtttatatctgtggaatcacc 22513009

                                                                        
Query: 654      aactatgtgaatgctgatccctgtcaataactgtgtgatcccagcagtganggatt 709
                ||| || ||||  || ||||||||||| | ||| ||||| |||| ||| | |||||
Sbjct: 22513008 aacaatatgaacactaatccctgtcaaaagctgagtgattccagaagtaagggatt 22512953



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                            
Query: 469      ctgctaaggctttctaggacaacacattccgcttcagctactgagtccaccccttccgca 528
                |||||||||||||| || ||||||||||| ||||| ||||| || ||||| ||||||| |
Sbjct: 22513576 ctgctaaggctttccagcacaacacattcagcttctgctaccgaatccactccttccgaa 22513517

                    
Query: 529      gcca 532
                ||||
Sbjct: 22513516 gcca 22513513



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 547      gacttttgagtggcactctctagcagctcactggtgcaaactggaag 593
                |||||||  |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 22513369 gacttttcggtggcactttctagcagctcacttgtgcagactggaag 22513323



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  125 bits (63), Expect = 2e-25
 Identities = 150/179 (83%)
 Strand = Plus / Minus

                                                                            
Query: 172      cctgctagcttcttatctgccaaggtgagctgcttcaaggcaacaaggcagccctgtgcc 231
                |||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| || 
Sbjct: 22526568 cctgctagcttcttgtctgccaatgttagctgcttcaaggccacaaggcaaccctgggca 22526509

                                                                            
Query: 232      acagcttgcgtgtactccgggtcccatccacccagcttcaccaccacatccgccttcgca 291
                |||||| | ||||||||||| ||||||||||| |||||||| || ||||| || ||||| 
Sbjct: 22526508 acagctcgtgtgtactccggatcccatccaccaagcttcactactacatcagctttcgcg 22526449

                                                                           
Query: 292      taggccacgctcccagtgctaacgcttctcctggcctcctctttggcagaggcttcatc 350
                || || ||  | || | ||| || ||||| | |||||| ||||||||||| ||||||||
Sbjct: 22526448 tacgcaacatttcccgagctcacacttctacgggcctcttctttggcagaagcttcatc 22526390



 Score =  101 bits (51), Expect = 3e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                            
Query: 358      tcggacaccgacaaccacaccgtgaatccagaatgaaggtactgccatttgtcgaacctg 417
                ||||| ||||||||||| ||||| ||||||| |||||| ||||||||||| || || |||
Sbjct: 22526239 tcggagaccgacaaccaaaccgtaaatccagcatgaagatactgccatttatcaaatctg 22526180

                                                                       
Query: 418      ctcgccgctccttgcttgccacccagagtcgctaccacggtacggacatggctgc 472
                || || ||||||||||| || |||||||| ||||| || ||||| ||||||||||
Sbjct: 22526179 ctagctgctccttgctttccccccagagttgctacgactgtacgaacatggctgc 22526125



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                            
Query: 99       aggatcccagccgggtggctcgatgttgggccagtcccctcgacagcctagcctgatgta 158
                ||||||||||||||| ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct: 22526798 aggatcccagccgggaggctcgatgttgggccaatcccctcggcatcccagcctcatgta 22526739

                                 
Query: 159      aaggctcttcttccctg 175
                 ||||||||||| ||||
Sbjct: 22526738 taggctcttcttacctg 22526722



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 95/116 (81%)
 Strand = Plus / Minus

                                                                            
Query: 594      atacccgatgccctcagcaatctctttagcgaccgcctcgttgatatccgtggaatctcc 653
                |||||| || |||||||| || |||||||| || |||||||| ||||| |||||||| ||
Sbjct: 22525536 atacccaattccctcagctatttctttagcaactgcctcgtttatatctgtggaatcacc 22525477

                                                                        
Query: 654      aactatgtgaatgctgatccctgtcaataactgtgtgatcccagcagtganggatt 709
                ||| || ||||  || ||||||||||| | ||| ||||| |||| ||| | |||||
Sbjct: 22525476 aacaatatgaacactaatccctgtcaaaagctgagtgattccagaagtaagggatt 22525421



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                            
Query: 469      ctgctaaggctttctaggacaacacattccgcttcagctactgagtccaccccttccgca 528
                |||||||||||||| || ||||||||||| ||||| ||||| || ||||| ||||||| |
Sbjct: 22526044 ctgctaaggctttccagcacaacacattcagcttctgctaccgaatccactccttccgaa 22525985

                    
Query: 529      gcca 532
                ||||
Sbjct: 22525984 gcca 22525981



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 547      gacttttgagtggcactctctagcagctcactggtgcaaactggaag 593
                |||||||  |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 22525837 gacttttcggtggcactttctagcagctcacttgtgcagactggaag 22525791



to top

>gb|AC142098.2| Mus musculus BAC clone RP24-458F14 from chromosome 19, complete
             sequence
          Length = 193811

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 262   cccagcttcaccaccacatccg 283
             ||||||||||||||||||||||
Sbjct: 86465 cccagcttcaccaccacatccg 86486



to top

>gb|BC004722.1| Mus musculus metastasis associated lung adenocarcinoma transcript 1
           (non-coding RNA), mRNA (cDNA clone IMAGE:3582796)
          Length = 1602

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 262 cccagcttcaccaccacatccg 283
           ||||||||||||||||||||||
Sbjct: 798 cccagcttcaccaccacatccg 777



to top

>gb|BC094333.1| Mus musculus metastasis associated lung adenocarcinoma transcript 1
           (non-coding RNA), mRNA (cDNA clone IMAGE:6819026)
          Length = 1277

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 262 cccagcttcaccaccacatccg 283
           ||||||||||||||||||||||
Sbjct: 592 cccagcttcaccaccacatccg 571



to top

>gb|BT017350.1| Zea mays clone EL01N0323G09.c mRNA sequence
          Length = 1164

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 198 gagctgcttcaaggcaacaag 218
           |||||||||||||||||||||
Sbjct: 854 gagctgcttcaaggcaacaag 874



to top

>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome
          Length = 1267782

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 326    cctcctctttggcagaggctt 346
              |||||||||||||||||||||
Sbjct: 380861 cctcctctttggcagaggctt 380881



to top

>gb|AC161178.16| Mus musculus chromosome 1, clone RP23-9F16, complete sequence
          Length = 216182

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tgtgccacagcttgcgtgta 245
             ||||||||||||||||||||
Sbjct: 86569 tgtgccacagcttgcgtgta 86588



to top

>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 390    atgaaggtactgccatttgt 409
              ||||||||||||||||||||
Sbjct: 989561 atgaaggtactgccatttgt 989542



to top

>gb|AC163622.4| Mus musculus BAC clone RP24-566G6 from chromosome y, complete sequence
          Length = 166756

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      gtaagcatgaaatgaatgaa 21
              ||||||||||||||||||||
Sbjct: 101165 gtaagcatgaaatgaatgaa 101146



to top

>gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome 14, complete sequence
          Length = 179789

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 312   aacgcttctcctggcctcctcttt 335
             ||||||| ||||||||||||||||
Sbjct: 68993 aacgcttgtcctggcctcctcttt 68970



to top

>gb|AC138739.8| Mus musculus chromosome 9, clone RP23-380A10, complete sequence
          Length = 217813

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 568   agcagctcactggtgcaaac 587
             ||||||||||||||||||||
Sbjct: 39737 agcagctcactggtgcaaac 39756



to top

>emb|AL162713.19| Human DNA sequence from clone RP11-168P13 on chromosome 13 Contains
             parts of 2 novel genes and a CpG island, complete sequence
          Length = 157175

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 647   aatctccaactatgtgaatg 666
             ||||||||||||||||||||
Sbjct: 29569 aatctccaactatgtgaatg 29550



to top

>gb|AC157553.10| Mus musculus chromosome 7, clone RP24-68L4, complete sequence
          Length = 184205

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   aaggcagccctgtgccacag 235
             ||||||||||||||||||||
Sbjct: 28937 aaggcagccctgtgccacag 28956



to top

>gb|AC151827.5| Mus musculus BAC clone RP24-453P17 from chromosome y, complete
            sequence
          Length = 166980

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    gtaagcatgaaatgaatgaa 21
            ||||||||||||||||||||
Sbjct: 4509 gtaagcatgaaatgaatgaa 4490



to top

>gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosome ul, complete
             sequence
          Length = 191648

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    taaagtaaaggttcctgaag 63
             ||||||||||||||||||||
Sbjct: 79129 taaagtaaaggttcctgaag 79148



to top

>gb|AC147580.3| Otolemur garnettii clone CH256-323C23, complete sequence
          Length = 184036

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 390    atgaaggtactgccatttgt 409
              ||||||||||||||||||||
Sbjct: 103453 atgaaggtactgccatttgt 103434



to top

>gb|AC084048.5| Homo sapiens BAC clone RP11-61G19 from 4, complete sequence
          Length = 131584

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  cctctttggcagaggcttca 348
            ||||||||||||||||||||
Sbjct: 8469 cctctttggcagaggcttca 8450



to top

>gb|AC068491.4| Homo sapiens BAC clone RP11-803D5 from 2, complete sequence
          Length = 176551

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 684    ctgtgtgatcccagcagtga 703
              ||||||||||||||||||||
Sbjct: 148303 ctgtgtgatcccagcagtga 148322



to top

>gb|AC069018.17|AC069018 Mus musculus  BAC MGS3-563C15 (Genome Systems Mouse BAC Library)
             complete sequence
          Length = 157665

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     gtaagcatgaaatgaatgaa 21
             ||||||||||||||||||||
Sbjct: 23920 gtaagcatgaaatgaatgaa 23901



to top

>gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromosome ul, complete
             sequence
          Length = 230767

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    taaagtaaaggttcctgaag 63
             ||||||||||||||||||||
Sbjct: 31896 taaagtaaaggttcctgaag 31915



to top

>gb|AC093616.5| Homo sapiens BAC clone RP13-511M20 from 2, complete sequence
          Length = 192494

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 684  ctgtgtgatcccagcagtga 703
            ||||||||||||||||||||
Sbjct: 8697 ctgtgtgatcccagcagtga 8716



to top

>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 628     gcctcgttgatatccgtgga 647
               ||||||||||||||||||||
Sbjct: 1039047 gcctcgttgatatccgtgga 1039028



to top

>emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on chromosome 14, complete
              sequence
          Length = 201441

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 312    aacgcttctcctggcctcctcttt 335
              ||||||| ||||||||||||||||
Sbjct: 138791 aacgcttgtcctggcctcctcttt 138814


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,905,371
Number of Sequences: 3902068
Number of extensions: 4905371
Number of successful extensions: 92602
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92487
Number of HSP's gapped (non-prelim): 109
length of query: 710
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 687
effective length of database: 17,143,297,704
effective search space: 11777445522648
effective search space used: 11777445522648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top