Clone Name | rbasd18i21 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | CP392_DROME (P82713) Probable cytochrome P450 309a2 (EC 1.14.-.-... | 30 | 6.3 | 2 | STRE_STRGR (P29782) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | 30 | 8.2 | 3 | RECX_XANOR (Q9AP31) Regulatory protein recX | 30 | 8.2 | 4 | RECX_XANCI (P0A0W7) Regulatory protein recX | 30 | 8.2 | 5 | RECX_XANAC (P0A0W6) Regulatory protein recX | 30 | 8.2 | 6 | RAPA_PHOLL (Q7N8V1) RNA polymerase-associated protein rapA (EC 3... | 30 | 8.2 |
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>CP392_DROME (P82713) Probable cytochrome P450 309a2 (EC 1.14.-.-) (CYPCCCIXA2)| Length = 538 Score = 30.0 bits (66), Expect = 6.3 Identities = 13/52 (25%), Positives = 27/52 (51%) Frame = -2 Query: 610 LVSSPEFYFQTVACNSREFRNATVNSDLHFIRWDTPPKQHPLYLGPKDYRRM 455 LV PE + + N R ++++ +S L +WD + +P + + +RR+ Sbjct: 117 LVLDPELAHEVLVSNFRCYKDSLQSSYLRHAKWDKYARLNPFWASGQSWRRL 168
>STRE_STRGR (P29782) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 328 Score = 29.6 bits (65), Expect = 8.2 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 5/41 (12%) Frame = +2 Query: 470 LGAEVERVLLGRGVPPDEMQVAVD----RGVPE-LAGVAGH 577 +G++ R LLG G PPD + A+D G P+ LA V GH Sbjct: 14 IGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGH 54
>RECX_XANOR (Q9AP31) Regulatory protein recX| Length = 162 Score = 29.6 bits (65), Expect = 8.2 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +2 Query: 479 EVERVLLGRGVPPDEMQVAVDR 544 E+ R LL RG+ PD Q AVDR Sbjct: 36 ELNRKLLARGIEPDAAQAAVDR 57
>RECX_XANCI (P0A0W7) Regulatory protein recX| Length = 162 Score = 29.6 bits (65), Expect = 8.2 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +2 Query: 479 EVERVLLGRGVPPDEMQVAVDR 544 E+ R LL RG+ PD Q AVDR Sbjct: 36 ELNRKLLARGIEPDAAQAAVDR 57
>RECX_XANAC (P0A0W6) Regulatory protein recX| Length = 162 Score = 29.6 bits (65), Expect = 8.2 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +2 Query: 479 EVERVLLGRGVPPDEMQVAVDR 544 E+ R LL RG+ PD Q AVDR Sbjct: 36 ELNRKLLARGIEPDAAQAAVDR 57
>RAPA_PHOLL (Q7N8V1) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 970 Score = 29.6 bits (65), Expect = 8.2 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = +3 Query: 24 PYCRNLASSFLFLYIHDTVDGIIRVRPRGRSV-DHLHCCFLKFL 152 PY N A + L + H+ +D P GR++ DH + L +L Sbjct: 611 PYLENTAQAVLIRWYHEGLDAFEHTCPTGRTIYDHYYEALLNYL 654 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,555,871 Number of Sequences: 219361 Number of extensions: 1266353 Number of successful extensions: 3953 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3831 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3945 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)