ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18i19 |
|---|---|
| Clone Library Name | barley_pub |
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 85.9 bits (211), Expect = 7e-17 Identities = 34/53 (64%), Positives = 45/53 (84%) Frame = -1 Query: 554 VGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 396 VG+TGF CRCG+ +C THRY + HEC+FD++ A +AIAKANPVVKA+K+D+I Sbjct: 116 VGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAKANPVVKADKVDRI 168
>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 82.4 bits (202), Expect = 8e-16 Identities = 35/53 (66%), Positives = 41/53 (77%) Frame = -1 Query: 554 VGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 396 VGLTGF+CRCGNL+C HRYSDKH C +DY+A A I K NPVV AEK+ +I Sbjct: 161 VGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 82.4 bits (202), Expect = 8e-16 Identities = 35/53 (66%), Positives = 41/53 (77%) Frame = -1 Query: 554 VGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 396 VGLTGF+CRCGNL+C HRYSDKH C +DY+A A I K NPVV AEK+ +I Sbjct: 161 VGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1| (Stress-associated protein 1) (OsISAP1) Length = 164 Score = 81.6 bits (200), Expect = 1e-15 Identities = 33/50 (66%), Positives = 42/50 (84%) Frame = -1 Query: 554 VGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKL 405 VGLTGF CRCG+L+C HRYSD+H C +DY++AA DAIA+ NPVV+A K+ Sbjct: 112 VGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161
>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein| At4g12040 Length = 175 Score = 78.6 bits (192), Expect = 1e-14 Identities = 30/53 (56%), Positives = 42/53 (79%) Frame = -1 Query: 554 VGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 396 VG+ GF C+CG+ +C +HRY +KHEC FD++ DAIAKANP+VKA+K+ +I Sbjct: 123 VGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175
>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein| At2g36320 Length = 161 Score = 73.2 bits (178), Expect = 5e-13 Identities = 31/53 (58%), Positives = 39/53 (73%) Frame = -1 Query: 554 VGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 396 VGLTGF CRCG +C +HRY + H C FD+++A + IAKANP+V A KL KI Sbjct: 109 VGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQKI 161
>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog| Length = 226 Score = 39.7 bits (91), Expect = 0.006 Identities = 17/54 (31%), Positives = 31/54 (57%) Frame = -1 Query: 536 NCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI*ERVGKT 375 +CRCG ++C HR ++H+C FD+ + ++K KLD+ +VG++ Sbjct: 172 SCRCGYVFCMLHRLPEQHDCTFDHMGR-----GREEAIMKMVKLDR---KVGRS 217
>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 39.7 bits (91), Expect = 0.006 Identities = 17/54 (31%), Positives = 31/54 (57%) Frame = -1 Query: 536 NCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI*ERVGKT 375 +CRCG ++C HR ++H+C FD+ + ++K KLD+ +VG++ Sbjct: 173 SCRCGYVFCMLHRLPEQHDCTFDHMGR-----GREEAIMKMVKLDR---KVGRS 218
>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 39.7 bits (91), Expect = 0.006 Identities = 17/54 (31%), Positives = 31/54 (57%) Frame = -1 Query: 536 NCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI*ERVGKT 375 +CRCG ++C HR ++H+C FD+ + ++K KLD+ +VG++ Sbjct: 173 SCRCGYVFCMLHRLPEQHDCTFDHMGR-----GREEAIMKMVKLDR---KVGRS 218
>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 39.7 bits (91), Expect = 0.006 Identities = 17/54 (31%), Positives = 31/54 (57%) Frame = -1 Query: 536 NCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI*ERVGKT 375 +CRCG ++C HR ++H+C FD+ + ++K KLD+ +VG++ Sbjct: 173 SCRCGYVFCMLHRLPEQHDCTFDHMGR-----GREEAIMKMVKLDR---KVGRS 218
>ERBB2_HUMAN (P04626) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Tyrosine kinase-type cell surface receptor HER2) (MLN 19) Length = 1255 Score = 35.0 bits (79), Expect = 0.14 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -2 Query: 343 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 227 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_CANFA (O18735) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) Length = 1259 Score = 35.0 bits (79), Expect = 0.14 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -2 Query: 343 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 227 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_MESAU (Q60553) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1254 Score = 35.0 bits (79), Expect = 0.14 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -2 Query: 343 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 227 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_RAT (P06494) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Epidermal growth factor receptor-related protein) Length = 1257 Score = 31.6 bits (70), Expect = 1.6 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -2 Query: 343 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 227 S C+ A L F+H+G C L C A+V + T + P G Sbjct: 251 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMHNPEG 288
>ERBB2_MOUSE (P70424) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1256 Score = 30.8 bits (68), Expect = 2.7 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -2 Query: 343 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 227 S C+ A L F+H+G C L C A++ + T + P G Sbjct: 251 SDCL-ACLHFNHSGICELHCPALITYNTDTFESMLNPEG 288
>HELS_METTH (O26901) Putative ski2-type helicase (EC 3.6.1.-)| Length = 690 Score = 29.6 bits (65), Expect = 6.0 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -2 Query: 367 PKSICATSSSCVFAALSFHHAGFCN 293 P S C + C+ A ++FHHAG N Sbjct: 278 PTSTCLKLAECLEAGIAFHHAGLFN 302
>SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor| Length = 297 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/39 (46%), Positives = 19/39 (48%) Frame = +3 Query: 138 PKCESHNTITVPPRRETTINKAYTT*PTRRPFGPGAAAE 254 P+CE T PPR ETT K TT PT R P E Sbjct: 50 PRCE-----TEPPRCETTTPKCETTPPTCRTEPPTCKTE 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,488,510 Number of Sequences: 219361 Number of extensions: 1314077 Number of successful extensions: 3367 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3247 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3367 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
