ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18i18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474646.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1404 Score = 109 bits (55), Expect = 1e-20 Identities = 97/111 (87%) Strand = Plus / Minus Query: 261 gaaagccatctgtcgatcatagcaaggcactccctgggcatgtactccggggctgtgtgg 320 ||||||||||| || | ||||||||| |||||| | ||||||||||||||||||||||| Sbjct: 1388 gaaagccatctatcaaccatagcaagacactcctttggcatgtactccggggctgtgtgc 1329 Query: 321 ccggcacccttcacagtcgcgtatgtcagattgttggagaaagtccttgtg 371 || |||||||||||||| |||||||||| || |||||| |||| |||||| Sbjct: 1328 ccagcacccttcacagttgcgtatgtcaagttattggagtaagttcttgtg 1278 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 600 actgttcccttatgaatacccaaactctcccttacgacttcgtcgtttgtccataactcg 659 ||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||| | | Sbjct: 1049 actgtccccttgtgaatacccaaactctcccttacagcttcgtcgtttgcccatattttg 990 Query: 660 gacaggaagtatgtggcattcct 682 ||||| | || ||||||||||| Sbjct: 989 gacagaacataggtggcattcct 967
>emb|AL606993.2|OSJN00121 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0051N19, complete sequence Length = 49800 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 261 gaaagccatctgtcgatcatagcaaggcactccctgggcatgtactccggggctgtgtgg 320 ||||||||||| || | ||||||||| |||||| | ||||||||||||||||||||||| Sbjct: 9139 gaaagccatctatcaaccatagcaagacactcctttggcatgtactccggggctgtgtgc 9198 Query: 321 ccggcaccct 330 || ||||||| Sbjct: 9199 ccagcaccct 9208 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 607 ccttatgaatacccaaactctcccttacgacttcgtcgtttgtccata 654 |||| ||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 10922 ccttgtgaatacccaaactctcccttacagcttcgtcgtttgcccata 10969
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 261 gaaagccatctgtcgatcatagcaaggcactccctgggcatgtactccggggctgtgtgg 320 ||||||||||| || | ||||||||| |||||| | ||||||||||||||||||||||| Sbjct: 5174734 gaaagccatctatcaaccatagcaagacactcctttggcatgtactccggggctgtgtgc 5174793 Query: 321 ccggcaccct 330 || ||||||| Sbjct: 5174794 ccagcaccct 5174803 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 607 ccttatgaatacccaaactctcccttacgacttcgtcgtttgtccata 654 |||| ||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 5176517 ccttgtgaatacccaaactctcccttacagcttcgtcgtttgcccata 5176564
>gb|AC157931.11| Mus musculus chromosome 5, clone RP24-159I10, complete sequence Length = 147518 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 177 tatatatatattctcttatctat 199 ||||||||||||||||||||||| Sbjct: 5629 tatatatatattctcttatctat 5607
>gb|AC113504.10| Mus musculus chromosome 5, clone RP23-370G17, complete sequence Length = 219617 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 177 tatatatatattctcttatctat 199 ||||||||||||||||||||||| Sbjct: 139842 tatatatatattctcttatctat 139820
>gb|AC149636.14| Medicago truncatula clone mth2-180a12, complete sequence Length = 139348 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 172 catcttatatatatattctctt 193 |||||||||||||||||||||| Sbjct: 7502 catcttatatatatattctctt 7481
>emb|AL929325.7| Human DNA sequence from clone CTD-2194M22 on chromosome X, complete sequence Length = 176541 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 458 aacataagatatcttactgtca 479 |||||||||||||||||||||| Sbjct: 101219 aacataagatatcttactgtca 101198
>emb|CT009511.9| M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence Length = 116999 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 tttcatcttatatatatattct 190 |||||||||||||||||||||| Sbjct: 30337 tttcatcttatatatatattct 30316
>gb|CP000175.1| Drosophila melanogaster genomic scaffold 211000022279519 Length = 115332 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 97 taatctcaatggaagtgaccac 118 |||||||||||||||||||||| Sbjct: 52393 taatctcaatggaagtgaccac 52372
>ref|NM_194479.1| Oryza sativa (japonica cultivar-group) putative acyltransferase (OSJNBa0046L02.9), mRNA Length = 1185 Score = 42.1 bits (21), Expect = 2.4 Identities = 48/57 (84%) Strand = Plus / Minus Query: 266 ccatctgtcgatcatagcaaggcactccctgggcatgtactccggggctgtgtggcc 322 ||||||||||| ||| | ||||||||| |||| |||||||||||| |||||||| Sbjct: 1161 ccatctgtcgagcatgtcgaggcactccttggggcggtactccggggcggtgtggcc 1105
>gb|AC079632.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0046L02, complete sequence Length = 142381 Score = 42.1 bits (21), Expect = 2.4 Identities = 48/57 (84%) Strand = Plus / Plus Query: 266 ccatctgtcgatcatagcaaggcactccctgggcatgtactccggggctgtgtggcc 322 ||||||||||| ||| | ||||||||| |||| |||||||||||| |||||||| Sbjct: 75315 ccatctgtcgagcatgtcgaggcactccttggggcggtactccggggcggtgtggcc 75371
>gb|AC104317.2| Homo sapiens chromosome 8 clone RP11-383J24 map q24.13, complete sequence Length = 198700 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 atatatttcatcttatatatatatt 188 |||||||| |||||||||||||||| Sbjct: 35425 atatattttatcttatatatatatt 35449
>gb|AC110716.6| Homo sapiens 3 BAC RP11-442N1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 67856 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 aatatatttcatcttatatatatat 187 |||||||||||||||| |||||||| Sbjct: 288 aatatatttcatcttaaatatatat 312
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 2.4 Identities = 48/57 (84%) Strand = Plus / Plus Query: 266 ccatctgtcgatcatagcaaggcactccctgggcatgtactccggggctgtgtggcc 322 ||||||||||| ||| | ||||||||| |||| |||||||||||| |||||||| Sbjct: 89421 ccatctgtcgagcatgtcgaggcactccttggggcggtactccggggcggtgtggcc 89477
>emb|BX571852.20| Zebrafish DNA sequence from clone DKEY-175N6 in linkage group 10, complete sequence Length = 178333 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 aatatatttcatcttatatatatat 187 |||||||||||| |||||||||||| Sbjct: 96917 aatatatttcatattatatatatat 96941 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 aatatatttcatcttatatatatat 187 |||||||||||| |||||||||||| Sbjct: 96672 aatatatttcatattatatatatat 96648
>gb|AC166065.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1136E01, complete sequence Length = 105139 Score = 42.1 bits (21), Expect = 2.4 Identities = 48/57 (84%) Strand = Plus / Plus Query: 266 ccatctgtcgatcatagcaaggcactccctgggcatgtactccggggctgtgtggcc 322 ||||||||||| ||| | ||||||||| |||| |||||||||||| |||||||| Sbjct: 94560 ccatctgtcgagcatgtcgaggcactccttggggcggtactccggggcggtgtggcc 94616
>gb|AC016933.20| Homo sapiens 3 BAC RP11-166D18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153763 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 aatatatttcatcttatatatatat 187 |||||||||||||||| |||||||| Sbjct: 1717 aatatatttcatcttaaatatatat 1693
>gb|AC108883.1| Genomic sequence for (japonica cultivar-group) cultivar Nipponbare clone OJ1136E01, from chromosome 10, complete sequence Length = 113856 Score = 42.1 bits (21), Expect = 2.4 Identities = 48/57 (84%) Strand = Plus / Minus Query: 266 ccatctgtcgatcatagcaaggcactccctgggcatgtactccggggctgtgtggcc 322 ||||||||||| ||| | ||||||||| |||| |||||||||||| |||||||| Sbjct: 24436 ccatctgtcgagcatgtcgaggcactccttggggcggtactccggggcggtgtggcc 24380
>gb|AC063938.13| Homo sapiens 3 BAC RP11-495I11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 94244 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 tatttcatcttatatatatat 187 ||||||||||||||||||||| Sbjct: 92174 tatttcatcttatatatatat 92154
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.4 Identities = 48/57 (84%) Strand = Plus / Plus Query: 266 ccatctgtcgatcatagcaaggcactccctgggcatgtactccggggctgtgtggcc 322 ||||||||||| ||| | ||||||||| |||| |||||||||||| |||||||| Sbjct: 89421 ccatctgtcgagcatgtcgaggcactccttggggcggtactccggggcggtgtggcc 89477
>gb|AC007218.6| Homo sapiens chromosome 16 clone RP11-297M9, complete sequence Length = 193220 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 catcttatatatatattctct 192 ||||||||||||||||||||| Sbjct: 153951 catcttatatatatattctct 153971
>gb|AC010740.7| Homo sapiens BAC clone RP11-493I5 from 2, complete sequence Length = 184455 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 aatatatttcatcttatatatatat 187 |||||||||||| |||||||||||| Sbjct: 18241 aatatatttcattttatatatatat 18217
>gb|AC107426.13| Homo sapiens 3 BAC RP11-573F3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114540 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 atatatttcatcttatatatatatt 188 ||||||||||| ||||||||||||| Sbjct: 94153 atatatttcattttatatatatatt 94177
>gb|AC114290.2| Homo sapiens chromosome 5 clone CTD-3062C19, complete sequence Length = 76144 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 aatatatttcatcttatatatatat 187 |||||||||||| |||||||||||| Sbjct: 60919 aatatatttcattttatatatatat 60943
>gb|AC090192.19| Homo sapiens chromosome 8, clone RP11-383J24, complete sequence Length = 198899 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 atatatttcatcttatatatatatt 188 |||||||| |||||||||||||||| Sbjct: 35426 atatattttatcttatatatatatt 35450
>emb|AL954182.18| Zebrafish DNA sequence from clone CH211-205N18 in linkage group 20, complete sequence Length = 151552 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 171 tcatcttatatatatattctcttat 195 |||||||||||||||||| |||||| Sbjct: 34960 tcatcttatatatatattatcttat 34936
>emb|AL929031.3| Zebrafish DNA sequence from clone CH211-255L18 in linkage group 17, complete sequence Length = 187548 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 tatttcatcttatatatatat 187 ||||||||||||||||||||| Sbjct: 64524 tatttcatcttatatatatat 64504
>gb|AC006531.1|AC006531 Homo sapiens chromosome 16 clone 113K5, complete sequence Length = 167525 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 catcttatatatatattctct 192 ||||||||||||||||||||| Sbjct: 32916 catcttatatatatattctct 32936
>dbj|AK104807.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E08, full insert sequence Length = 1605 Score = 42.1 bits (21), Expect = 2.4 Identities = 48/57 (84%) Strand = Plus / Minus Query: 266 ccatctgtcgatcatagcaaggcactccctgggcatgtactccggggctgtgtggcc 322 ||||||||||| ||| | ||||||||| |||| |||||||||||| |||||||| Sbjct: 1400 ccatctgtcgagcatgtcgaggcactccttggggcggtactccggggcggtgtggcc 1344
>dbj|AK072954.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149K09, full insert sequence Length = 1655 Score = 42.1 bits (21), Expect = 2.4 Identities = 48/57 (84%) Strand = Plus / Minus Query: 266 ccatctgtcgatcatagcaaggcactccctgggcatgtactccggggctgtgtggcc 322 ||||||||||| ||| | ||||||||| |||| |||||||||||| |||||||| Sbjct: 1403 ccatctgtcgagcatgtcgaggcactccttggggcggtactccggggcggtgtggcc 1347
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 gagaaagtccttgtgtatccc 377 ||||||||||||||||||||| Sbjct: 1382269 gagaaagtccttgtgtatccc 1382249
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.4 Identities = 48/57 (84%) Strand = Plus / Plus Query: 266 ccatctgtcgatcatagcaaggcactccctgggcatgtactccggggctgtgtggcc 322 ||||||||||| ||| | ||||||||| |||| |||||||||||| |||||||| Sbjct: 89419 ccatctgtcgagcatgtcgaggcactccttggggcggtactccggggcggtgtggcc 89475
>gb|AC137708.16| Mus musculus chromosome 3, clone RP24-277H8, complete sequence Length = 154779 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 aatatatttcatcttatatat 183 ||||||||||||||||||||| Sbjct: 109330 aatatatttcatcttatatat 109310
>emb|AL671925.4| Mouse DNA sequence from clone RP23-236O21 on chromosome 4, complete sequence Length = 218429 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 tatttcatcttatatatatat 187 ||||||||||||||||||||| Sbjct: 41143 tatttcatcttatatatatat 41163
>gb|AC171263.1| Pan troglodytes chromosome X clone PTB-018K13 map human ortholog p11.4, complete sequence Length = 147595 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ataaattaatctcaatggaa 110 |||||||||||||||||||| Sbjct: 52103 ataaattaatctcaatggaa 52122
>gb|AC155166.4| Mus musculus BAC clone RP24-69M8 from chromosome 8, complete sequence Length = 212711 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 ggtgtcaacataagatatct 471 |||||||||||||||||||| Sbjct: 82781 ggtgtcaacataagatatct 82800
>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12, complete sequence Length = 145517 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tatatttcatcttatatata 184 |||||||||||||||||||| Sbjct: 1377 tatatttcatcttatatata 1396
>gb|AC104281.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1537_B05, complete sequence Length = 129890 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tatatttcatcttatatata 184 |||||||||||||||||||| Sbjct: 86883 tatatttcatcttatatata 86902
>gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence Length = 252420 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 atatatttcatcttatatatatat 187 |||||||| ||||||||||||||| Sbjct: 65242 atatattttatcttatatatatat 65219
>gb|AC145508.3| Dasypus novemcinctus clone VMRC5-464O17, complete sequence Length = 169201 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 ttgggattcataaattaatctcaa 105 |||||||||||||| ||||||||| Sbjct: 127452 ttgggattcataaaataatctcaa 127475 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 ttgggattcataaattaatctcaa 105 |||||||||||||| ||||||||| Sbjct: 122099 ttgggattcataaaataatctcaa 122076
>gb|AF172282.1| Oryza sativa adh1-adh2 region Length = 339485 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atttcatcttatatatatat 187 |||||||||||||||||||| Sbjct: 274428 atttcatcttatatatatat 274409
>gb|AC146536.3| Dasypus novemcinctus clone VMRC5-215B23, complete sequence Length = 113776 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 ttgggattcataaattaatctcaa 105 |||||||||||||| ||||||||| Sbjct: 99458 ttgggattcataaaataatctcaa 99435
>gb|AY021803.1| Oryza sativa microsatellite MRG4128 containing (TA)X36, closest to marker C477, genomic sequence Length = 272 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atttcatcttatatatatat 187 |||||||||||||||||||| Sbjct: 181 atttcatcttatatatatat 162
>gb|AC149429.1| Populus trichocarpa clone Pop1-109D09, complete sequence Length = 94633 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tatatatatattctcttatc 196 |||||||||||||||||||| Sbjct: 55577 tatatatatattctcttatc 55558
>ref|XM_675950.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7773.2), mRNA Length = 1551 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 587 ttgccatgatggaactgttc 606 |||||||||||||||||||| Sbjct: 1385 ttgccatgatggaactgttc 1404
>gb|AC123523.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0051P13, complete sequence Length = 142241 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atttcatcttatatatatat 187 |||||||||||||||||||| Sbjct: 61668 atttcatcttatatatatat 61687
>gb|AC138714.4| Mus musculus chromosome 18 clone RP23-406C12, complete sequence Length = 191928 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tatatatatattctcttatc 196 |||||||||||||||||||| Sbjct: 41933 tatatatatattctcttatc 41914
>emb|AL627402.10| Human DNA sequence from clone RP11-204C16 on chromosome X Contains part of the CASK gene for calcium/calmodulin-dependent serine protein kinase (MAGUK family), the GPR34 gene for G protein-coupled receptor 34, the GPR82 gene for G protein-coupled receptor 82, a tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide (YWHAZ) pseudogene and a CpG island, complete sequence Length = 132290 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ataaattaatctcaatggaa 110 |||||||||||||||||||| Sbjct: 60449 ataaattaatctcaatggaa 60468
>emb|AL645733.1| Human DNA sequence from clone RP11-317M22 on chromosome 6 Contains a novel pseudogene and the 3' end of the SLC22A2 gene for solute carrier family 22 (organic cation transporter), member 2 (OCT2), complete sequence Length = 37274 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 ggagaaagtccttgtgtatc 375 |||||||||||||||||||| Sbjct: 34099 ggagaaagtccttgtgtatc 34118
>gb|AE014837.1| Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence Length = 257757 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tatatatatattctcttatc 196 |||||||||||||||||||| Sbjct: 202379 tatatatatattctcttatc 202398
>emb|AL162386.17| Human DNA sequence from clone RP11-272P10 on chromosome 9 Contains the 5' end of the MPDZ gene for multiple PDZ domain protein, a novel gene, an inhibitor of growth family member 1 (ING1) pseudogene and a CpG island, complete sequence Length = 164138 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 atatatttcatcttatatatatat 187 ||||||||||||||| |||||||| Sbjct: 143437 atatatttcatcttaaatatatat 143414
>gb|AC131213.4| Homo sapiens 12 BAC RP13-544K12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153999 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 atatatttcatcttatatatatat 187 ||||||||||| |||||||||||| Sbjct: 127959 atatatttcattttatatatatat 127982
>emb|AL008970.3|PFMAL3P4 Plasmodium falciparum MAL3P4 Length = 113880 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tatatttcatcttatatata 184 |||||||||||||||||||| Sbjct: 76542 tatatttcatcttatatata 76561
>gb|AC162036.4| Mus musculus chromosome 3, clone RP24-324K2, complete sequence Length = 161596 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 166 atatttcatcttatatatatattctctt 193 ||||||||| ||||||||||||| |||| Sbjct: 41159 atatttcatattatatatatattatctt 41132
>emb|BX571942.11| Zebrafish DNA sequence from clone DKEY-240A24 in linkage group 11, complete sequence Length = 102110 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 atatatttcatcttatatatatat 187 |||||||||||| ||||||||||| Sbjct: 84500 atatatttcatcatatatatatat 84523
>emb|BX293996.16| Zebrafish DNA sequence from clone DKEY-38J20 in linkage group 1, complete sequence Length = 237723 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 tttcatcttatatatatatt 188 |||||||||||||||||||| Sbjct: 22716 tttcatcttatatatatatt 22697
>gb|AC026347.17| Homo sapiens 3 BAC RP11-362A9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 195430 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 atatatttcatcttatatatatat 187 |||||||| ||||||||||||||| Sbjct: 27874 atatattttatcttatatatatat 27897
>gb|AC092034.2| Homo sapiens chromosome 3 clone RP11-48N23, complete sequence Length = 154084 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 aaattaatctcaatggaagt 112 |||||||||||||||||||| Sbjct: 32998 aaattaatctcaatggaagt 32979
>gb|AC093853.3| Homo sapiens BAC clone RP11-502M1 from 4, complete sequence Length = 212207 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 attgatttcatgtgtgtaag 567 |||||||||||||||||||| Sbjct: 127922 attgatttcatgtgtgtaag 127903
>gb|AC009166.4| Homo sapiens chromosome 16 clone RP11-80B1, complete sequence Length = 174550 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 tatatatatattctcttatctatt 200 ||||||||||||||||||| |||| Sbjct: 3327 tatatatatattctcttatatatt 3304
>gb|AC103566.1| Caenorhabditis briggsae cosmid CB024E07, complete sequence Length = 79224 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 atatatttcatcttatatatatat 187 |||||||||||| ||||||||||| Sbjct: 29382 atatatttcatcctatatatatat 29359
>gb|AC092038.3| Homo sapiens chromosome 3 clone RP11-89F18, complete sequence Length = 170948 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 544 tactattgatttcatgtgtgtaag 567 |||||||||||||| ||||||||| Sbjct: 46881 tactattgatttcaagtgtgtaag 46858
>gb|AC093060.2| Homo sapiens chromosome 19 clone LLNLF-210G10, complete sequence Length = 4777 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 atatatttcatcttatatatatat 187 ||||||||||| |||||||||||| Sbjct: 4385 atatatttcattttatatatatat 4408
>gb|AC159099.4| Mus musculus chromosome 15, clone RP24-132A22, complete sequence Length = 147359 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ttgttggagaaagtccttgt 370 |||||||||||||||||||| Sbjct: 129377 ttgttggagaaagtccttgt 129396
>gb|AC153145.4| Mus musculus BAC clone RP23-222C3 from chromosome 18, complete sequence Length = 193382 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tatatatatattctcttatc 196 |||||||||||||||||||| Sbjct: 41932 tatatatatattctcttatc 41913
>gb|AC010671.8|AC010671 Drosophila melanogaster, chromosome X, region 18E-18F, BAC clone BACR33M08, complete sequence Length = 180263 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 tatatttcatcttatatatatatt 188 ||||||| |||||||||||||||| Sbjct: 162665 tatattttatcttatatatatatt 162642
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atttcatcttatatatatat 187 |||||||||||||||||||| Sbjct: 5401127 atttcatcttatatatatat 5401146
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tatatttcatcttatatata 184 |||||||||||||||||||| Sbjct: 16677267 tatatttcatcttatatata 16677286
>gb|AC100807.5| Homo sapiens chromosome 8, clone CTD-2534J5, complete sequence Length = 116750 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 tggagaaagtccttgtgtatccca 378 ||||||||| |||||||||||||| Sbjct: 38198 tggagaaaggccttgtgtatccca 38175
>gb|AC012165.6|AC012165 Drosophila melanogaster, chromosome X, region 18F-18F, BAC clone BACR48P17, complete sequence Length = 176195 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 tatatttcatcttatatatatatt 188 ||||||| |||||||||||||||| Sbjct: 46025 tatattttatcttatatatatatt 46002
>gb|AY967997.1| Pegoscapus tonduzi cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 816 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tatatttcatcttatatata 184 |||||||||||||||||||| Sbjct: 633 tatatttcatcttatatata 614
>gb|AC073485.3| Homo sapiens BAC clone RP11-798J16 from 2, complete sequence Length = 140811 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 atatatttcatcttatatat 183 |||||||||||||||||||| Sbjct: 77197 atatatttcatcttatatat 77178
>gb|AC137494.1| Homo sapiens chromosome 16 clone LA16c-491E3, complete sequence Length = 37190 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 tatatatatattctcttatctatt 200 ||||||||||||||||||| |||| Sbjct: 28258 tatatatatattctcttatatatt 28281
>gb|AC135388.2| Homo sapiens 12 BAC RP11-474D1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 85801 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ttatttgtttatgtccattg 84 |||||||||||||||||||| Sbjct: 75037 ttatttgtttatgtccattg 75056
>emb|BX537165.3| Zebrafish DNA sequence from clone CH211-263O4 in linkage group 1, complete sequence Length = 158346 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 tttcatcttatatatatatt 188 |||||||||||||||||||| Sbjct: 144255 tttcatcttatatatatatt 144274
>emb|X15855.1|LELAT52 Tomato anther specific LAT52 gene Length = 1810 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atttcatcttatatatatat 187 |||||||||||||||||||| Sbjct: 1183 atttcatcttatatatatat 1202
>emb|AL583785.2|HS536O18 Homo sapiens chromosome 9 BAC RP11-536O18, complete sequence Length = 174798 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 atatatttcatcttatatatatat 187 ||||||||||||||| |||||||| Sbjct: 40560 atatatttcatcttaaatatatat 40537
>gb|AE003513.3| Drosophila melanogaster chromosome X, section 65 of 74 of the complete sequence Length = 207432 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 tatatttcatcttatatatatatt 188 ||||||| |||||||||||||||| Sbjct: 66164 tatattttatcttatatatatatt 66141
>gb|AC099713.5| Mus musculus chromosome 15, clone RP23-447B6, complete sequence Length = 199130 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ttgttggagaaagtccttgt 370 |||||||||||||||||||| Sbjct: 17872 ttgttggagaaagtccttgt 17891
>emb|AL837509.11| Mouse DNA sequence from clone RP23-44L6 on chromosome 2, complete sequence Length = 156698 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 tttcatcttatatatatatt 188 |||||||||||||||||||| Sbjct: 109007 tttcatcttatatatatatt 109026
>gb|AC005785.1|AC005785 Homo sapiens chromosome 19, cosmid R33907, complete sequence Length = 41630 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 atatatttcatcttatatatatat 187 ||||||||||| |||||||||||| Sbjct: 1846 atatatttcattttatatatatat 1869
>dbj|AP005853.3| Homo sapiens genomic DNA, chromosome 8q24, clone: KB265H3, complete sequence Length = 122073 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 tggagaaagtccttgtgtatccca 378 ||||||||| |||||||||||||| Sbjct: 68374 tggagaaaggccttgtgtatccca 68397
>gb|AC102272.20| Mus musculus chromosome 3, clone RP24-283P8, complete sequence Length = 161178 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 166 atatttcatcttatatatatattctctt 193 ||||||||| ||||||||||||| |||| Sbjct: 87933 atatttcatattatatatatattatctt 87960
>ref|NM_005858.2| Homo sapiens A kinase (PRKA) anchor protein 8 (AKAP8), mRNA Length = 3545 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 atatatttcatcttatatatatat 187 ||||||||||| |||||||||||| Sbjct: 3137 atatatttcattttatatatatat 3114
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atttcatcttatatatatat 187 |||||||||||||||||||| Sbjct: 5467604 atttcatcttatatatatat 5467623
>emb|AL358788.17| Human DNA sequence from clone RP11-466J21 on chromosome 1 Contains the 5' UTR of a novel gene (KIAA0478), complete sequence Length = 76982 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 cctgtatcctttagcaatca 522 |||||||||||||||||||| Sbjct: 17504 cctgtatcctttagcaatca 17523
>gb|AC133497.4| Mus musculus BAC clone RP24-390A22 from 8, complete sequence Length = 158740 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 ggtgtcaacataagatatct 471 |||||||||||||||||||| Sbjct: 123568 ggtgtcaacataagatatct 123587
>gb|AC147989.4| Mus musculus BAC clone RP24-468I14 from 18, complete sequence Length = 204168 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tatatatatattctcttatc 196 |||||||||||||||||||| Sbjct: 48912 tatatatatattctcttatc 48931
>emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chromosome X, complete sequence Length = 142846 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atttcatcttatatatatat 187 |||||||||||||||||||| Sbjct: 102995 atttcatcttatatatatat 102976
>gb|AC146366.3| Dasypus novemcinctus clone VMRC5-468M8, complete sequence Length = 112552 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 ttgggattcataaattaatctcaa 105 |||||||||||||| ||||||||| Sbjct: 4316 ttgggattcataaaataatctcaa 4293
>emb|AL050160.1|HSM800458 Homo sapiens mRNA; cDNA DKFZp586B1222 (from clone DKFZp586B1222); partial cds Length = 2482 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 atatatttcatcttatatatatat 187 ||||||||||| |||||||||||| Sbjct: 2074 atatatttcattttatatatatat 2051 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,808,998 Number of Sequences: 3902068 Number of extensions: 14808998 Number of successful extensions: 138944 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 138452 Number of HSP's gapped (non-prelim): 492 length of query: 684 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 661 effective length of database: 17,143,297,704 effective search space: 11331719782344 effective search space used: 11331719782344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
