Clone Name | rbasd18i13 |
---|---|
Clone Library Name | barley_pub |
>gb|BT017484.1| Zea mays clone EL01N0412C09.c mRNA sequence Length = 1014 Score = 190 bits (96), Expect = 3e-45 Identities = 165/188 (87%) Strand = Plus / Minus Query: 244 gagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaagaggggcacatg 303 ||||||||||||||| || ||||||||||||||||||| ||| |||||||||| ||||| Sbjct: 826 gagggaagcgacgaagtgcatctggacctcctcgtcgatcgtcaagaagaggggaacatg 767 Query: 304 cacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtggtagtacacata 363 ||| ||||| || ||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct: 766 cacgaacagggatttgatgccgtgttgctccgcgaaccgaagagagtggtagtacacgta 707 Query: 364 gttgcacacgaaccgtccggcgtcatccgaaggcatcacatcgtagcctgtctttcggag 423 |||||| || ||||| |||||||| | || |||| ||| ||||||||| |||| ||||| Sbjct: 706 gttgcatacaaaccgaccggcgtcgccggagggcaccacgtcgtagcctatcttccggag 647 Query: 424 tgacttgg 431 |||||||| Sbjct: 646 tgacttgg 639
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 178 bits (90), Expect = 1e-41 Identities = 177/206 (85%) Strand = Plus / Minus Query: 233 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 292 |||||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||| Sbjct: 13761893 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 13761834 Query: 293 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 352 ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct: 13761833 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaagagagtga 13761774 Query: 353 tagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcacatcgtagcct 412 || |||||||||||||| |||||||| || || || || || ||||| ||||| |||||| Sbjct: 13761773 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 13761714 Query: 413 gtctttcggagtgacttgggtaactc 438 ||||| ||||||||||||| |||||| Sbjct: 13761713 gtcttccggagtgacttggttaactc 13761688
>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1655_B12 Length = 132736 Score = 178 bits (90), Expect = 1e-41 Identities = 177/206 (85%) Strand = Plus / Minus Query: 233 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 292 |||||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||| Sbjct: 11377 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 11318 Query: 293 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 352 ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct: 11317 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaagagagtga 11258 Query: 353 tagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcacatcgtagcct 412 || |||||||||||||| |||||||| || || || || || ||||| ||||| |||||| Sbjct: 11257 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 11198 Query: 413 gtctttcggagtgacttgggtaactc 438 ||||| ||||||||||||| |||||| Sbjct: 11197 gtcttccggagtgacttggttaactc 11172
>dbj|AK105043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A05, full insert sequence Length = 1012 Score = 170 bits (86), Expect = 2e-39 Identities = 176/206 (85%) Strand = Plus / Minus Query: 233 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 292 |||||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||| Sbjct: 877 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 818 Query: 293 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 352 ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| | |||||| Sbjct: 817 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaaaagagtga 758 Query: 353 tagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcacatcgtagcct 412 || |||||||||||||| |||||||| || || || || || ||||| ||||| |||||| Sbjct: 757 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 698 Query: 413 gtctttcggagtgacttgggtaactc 438 ||||| ||||||||||||| |||||| Sbjct: 697 gtcttccggagtgacttggttaactc 672
>dbj|AK060069.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-H12, full insert sequence Length = 1012 Score = 170 bits (86), Expect = 2e-39 Identities = 176/206 (85%) Strand = Plus / Minus Query: 233 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 292 |||||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||| Sbjct: 877 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 818 Query: 293 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 352 ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| | |||||| Sbjct: 817 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaaaagagtga 758 Query: 353 tagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcacatcgtagcct 412 || |||||||||||||| |||||||| || || || || || ||||| ||||| |||||| Sbjct: 757 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 698 Query: 413 gtctttcggagtgacttgggtaactc 438 ||||| ||||||||||||| |||||| Sbjct: 697 gtcttccggagtgacttggttaactc 672
>ref|XM_479284.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1227 Score = 167 bits (84), Expect = 4e-38 Identities = 183/216 (84%) Strand = Plus / Minus Query: 216 cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 275 ||||||||| | ||| |||||||| | |||||||| || ||||| ||||||||||||| Sbjct: 970 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 911 Query: 276 cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 335 | |||| ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 910 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 851 Query: 336 cgaaccggagagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaag 395 ||||||| ||||| || || |||||||||||||| || ||||| || || || || || | Sbjct: 850 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 791 Query: 396 gcatcacatcgtagcctgtctttcggagtgacttgg 431 |||| ||||||||||||||||| ||||||||||||| Sbjct: 790 gcattacatcgtagcctgtcttccggagtgacttgg 755
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 167 bits (84), Expect = 4e-38 Identities = 183/216 (84%) Strand = Plus / Plus Query: 216 cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 275 ||||||||| | ||| |||||||| | |||||||| || ||||| ||||||||||||| Sbjct: 26565338 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 26565397 Query: 276 cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 335 | |||| ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 26565398 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 26565457 Query: 336 cgaaccggagagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaag 395 ||||||| ||||| || || |||||||||||||| || ||||| || || || || || | Sbjct: 26565458 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 26565517 Query: 396 gcatcacatcgtagcctgtctttcggagtgacttgg 431 |||| ||||||||||||||||| ||||||||||||| Sbjct: 26565518 gcattacatcgtagcctgtcttccggagtgacttgg 26565553
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 167 bits (84), Expect = 4e-38 Identities = 183/216 (84%) Strand = Plus / Plus Query: 216 cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 275 ||||||||| | ||| |||||||| | |||||||| || ||||| ||||||||||||| Sbjct: 110609 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 110668 Query: 276 cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 335 | |||| ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 110669 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 110728 Query: 336 cgaaccggagagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaag 395 ||||||| ||||| || || |||||||||||||| || ||||| || || || || || | Sbjct: 110729 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 110788 Query: 396 gcatcacatcgtagcctgtctttcggagtgacttgg 431 |||| ||||||||||||||||| ||||||||||||| Sbjct: 110789 gcattacatcgtagcctgtcttccggagtgacttgg 110824
>dbj|AK067207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M06, full insert sequence Length = 1228 Score = 167 bits (84), Expect = 4e-38 Identities = 183/216 (84%) Strand = Plus / Minus Query: 216 cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 275 ||||||||| | ||| |||||||| | |||||||| || ||||| ||||||||||||| Sbjct: 971 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 912 Query: 276 cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 335 | |||| ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 911 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 852 Query: 336 cgaaccggagagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaag 395 ||||||| ||||| || || |||||||||||||| || ||||| || || || || || | Sbjct: 851 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 792 Query: 396 gcatcacatcgtagcctgtctttcggagtgacttgg 431 |||| ||||||||||||||||| ||||||||||||| Sbjct: 791 gcattacatcgtagcctgtcttccggagtgacttgg 756
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 79.8 bits (40), Expect = 7e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 14273048 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 14272989 Query: 344 agagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcaca 403 ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||| |||| Sbjct: 14272988 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 14272929 Query: 404 tcgtagcc 411 ||| |||| Sbjct: 14272928 tcgaagcc 14272921
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 79.8 bits (40), Expect = 7e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 22277 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 22218 Query: 344 agagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcaca 403 ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||| |||| Sbjct: 22217 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 22158 Query: 404 tcgtagcc 411 ||| |||| Sbjct: 22157 tcgaagcc 22150
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 79.8 bits (40), Expect = 7e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 84436 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 84377 Query: 344 agagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcaca 403 ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||| |||| Sbjct: 84376 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 84317 Query: 404 tcgtagcc 411 ||| |||| Sbjct: 84316 tcgaagcc 84309
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 79.8 bits (40), Expect = 7e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 14268023 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 14267964 Query: 344 agagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcaca 403 ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||| |||| Sbjct: 14267963 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 14267904 Query: 404 tcgtagcc 411 ||| |||| Sbjct: 14267903 tcgaagcc 14267896
>dbj|AK099464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023I17, full insert sequence Length = 1114 Score = 79.8 bits (40), Expect = 7e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 809 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 750 Query: 344 agagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcaca 403 ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||| |||| Sbjct: 749 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 690 Query: 404 tcgtagcc 411 ||| |||| Sbjct: 689 tcgaagcc 682
>dbj|AK062116.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C05, full insert sequence Length = 1164 Score = 79.8 bits (40), Expect = 7e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 871 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 812 Query: 344 agagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcaca 403 ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||| |||| Sbjct: 811 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 752 Query: 404 tcgtagcc 411 ||| |||| Sbjct: 751 tcgaagcc 744
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 aactttacatcttccaggtcaa 189 |||||||||||||||||||||| Sbjct: 8184579 aactttacatcttccaggtcaa 8184558
>dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1047A05 Length = 157517 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 aactttacatcttccaggtcaa 189 |||||||||||||||||||||| Sbjct: 152890 aactttacatcttccaggtcaa 152869
>dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1449_H02 Length = 117860 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 aactttacatcttccaggtcaa 189 |||||||||||||||||||||| Sbjct: 17261 aactttacatcttccaggtcaa 17240
>ref|XM_741731.1| Aspergillus fumigatus Af293 endo-1,4-beta-mannosidase (Afu7g01070) partial mRNA Length = 1434 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 cttgatgccgtgctgctccgc 336 ||||||||||||||||||||| Sbjct: 693 cttgatgccgtgctgctccgc 673
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 372 cgaaccgtccggcgtcatccg 392 ||||||||||||||||||||| Sbjct: 3569112 cgaaccgtccggcgtcatccg 3569132
>gb|AC007361.2| Homo sapiens BAC clone RP11-144P23 from 7, complete sequence Length = 36465 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 tttttctctccccttaaata 97 |||||||||||||||||||| Sbjct: 1325 tttttctctccccttaaata 1306
>ref|XM_500170.1| Yarrowia lipolytica CLIB122, YALI0A17578g predicted mRNA Length = 3702 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 gaaggcatcacatcgtagcc 411 |||||||||||||||||||| Sbjct: 2957 gaaggcatcacatcgtagcc 2938
>gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, complete sequence Length = 253504 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 cacatgcacaaacagagact 317 |||||||||||||||||||| Sbjct: 186958 cacatgcacaaacagagact 186977
>emb|AL954851.5| Zebrafish DNA sequence from clone CH211-280J3, complete sequence Length = 177221 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 288 agaagaggggcacatgcacaaacagaga 315 |||||||| |||||||||||||||||| Sbjct: 18089 agaagaggttcacatgcacaaacagaga 18116
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 gaaggcatcacatcgtagcc 411 |||||||||||||||||||| Sbjct: 1816198 gaaggcatcacatcgtagcc 1816179 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,923,340 Number of Sequences: 3902068 Number of extensions: 2923340 Number of successful extensions: 54640 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54471 Number of HSP's gapped (non-prelim): 169 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)