ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18i13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT017484.1| Zea mays clone EL01N0412C09.c mRNA sequence 190 3e-45
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
3dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
4dbj|AK105043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
5dbj|AK060069.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
6ref|XM_479284.1| Oryza sativa (japonica cultivar-group), mRNA 167 4e-38
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
8dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
9dbj|AK067207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 80 7e-12
11gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 geno... 80 7e-12
12gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome... 80 7e-12
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
14dbj|AK099464.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
15dbj|AK062116.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
16dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
17dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
18dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
19ref|XM_741731.1| Aspergillus fumigatus Af293 endo-1,4-beta-manno... 42 1.5
20gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 1.5
21gb|AC007361.2| Homo sapiens BAC clone RP11-144P23 from 7, comple... 40 6.0
22ref|XM_500170.1| Yarrowia lipolytica CLIB122, YALI0A17578g predi... 40 6.0
23gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, com... 40 6.0
24emb|AL954851.5| Zebrafish DNA sequence from clone CH211-280J3, c... 40 6.0
25emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 6.0

>gb|BT017484.1| Zea mays clone EL01N0412C09.c mRNA sequence
          Length = 1014

 Score =  190 bits (96), Expect = 3e-45
 Identities = 165/188 (87%)
 Strand = Plus / Minus

                                                                       
Query: 244 gagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaagaggggcacatg 303
           ||||||||||||||| || |||||||||||||||||||  ||| |||||||||| |||||
Sbjct: 826 gagggaagcgacgaagtgcatctggacctcctcgtcgatcgtcaagaagaggggaacatg 767

                                                                       
Query: 304 cacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtggtagtacacata 363
           ||| ||||| || ||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 766 cacgaacagggatttgatgccgtgttgctccgcgaaccgaagagagtggtagtacacgta 707

                                                                       
Query: 364 gttgcacacgaaccgtccggcgtcatccgaaggcatcacatcgtagcctgtctttcggag 423
           |||||| || ||||| ||||||||  | || |||| ||| ||||||||| |||| |||||
Sbjct: 706 gttgcatacaaaccgaccggcgtcgccggagggcaccacgtcgtagcctatcttccggag 647

                   
Query: 424 tgacttgg 431
           ||||||||
Sbjct: 646 tgacttgg 639



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  178 bits (90), Expect = 1e-41
 Identities = 177/206 (85%)
 Strand = Plus / Minus

                                                                            
Query: 233      agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 292
                ||||||||||  |||||||| || ||||| |||||||||||||| ||||  ||| |||| 
Sbjct: 13761893 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 13761834

                                                                            
Query: 293      aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 352
                ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| 
Sbjct: 13761833 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaagagagtga 13761774

                                                                            
Query: 353      tagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcacatcgtagcct 412
                || |||||||||||||| |||||||| || || || || || ||||| ||||| ||||||
Sbjct: 13761773 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 13761714

                                          
Query: 413      gtctttcggagtgacttgggtaactc 438
                ||||| ||||||||||||| ||||||
Sbjct: 13761713 gtcttccggagtgacttggttaactc 13761688



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>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1655_B12
          Length = 132736

 Score =  178 bits (90), Expect = 1e-41
 Identities = 177/206 (85%)
 Strand = Plus / Minus

                                                                         
Query: 233   agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 292
             ||||||||||  |||||||| || ||||| |||||||||||||| ||||  ||| |||| 
Sbjct: 11377 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 11318

                                                                         
Query: 293   aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 352
             ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| 
Sbjct: 11317 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaagagagtga 11258

                                                                         
Query: 353   tagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcacatcgtagcct 412
             || |||||||||||||| |||||||| || || || || || ||||| ||||| ||||||
Sbjct: 11257 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 11198

                                       
Query: 413   gtctttcggagtgacttgggtaactc 438
             ||||| ||||||||||||| ||||||
Sbjct: 11197 gtcttccggagtgacttggttaactc 11172



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>dbj|AK105043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A05, full
           insert sequence
          Length = 1012

 Score =  170 bits (86), Expect = 2e-39
 Identities = 176/206 (85%)
 Strand = Plus / Minus

                                                                       
Query: 233 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 292
           ||||||||||  |||||||| || ||||| |||||||||||||| ||||  ||| |||| 
Sbjct: 877 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 818

                                                                       
Query: 293 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 352
           ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| | |||||| 
Sbjct: 817 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaaaagagtga 758

                                                                       
Query: 353 tagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcacatcgtagcct 412
           || |||||||||||||| |||||||| || || || || || ||||| ||||| ||||||
Sbjct: 757 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 698

                                     
Query: 413 gtctttcggagtgacttgggtaactc 438
           ||||| ||||||||||||| ||||||
Sbjct: 697 gtcttccggagtgacttggttaactc 672



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>dbj|AK060069.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-H12, full
           insert sequence
          Length = 1012

 Score =  170 bits (86), Expect = 2e-39
 Identities = 176/206 (85%)
 Strand = Plus / Minus

                                                                       
Query: 233 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 292
           ||||||||||  |||||||| || ||||| |||||||||||||| ||||  ||| |||| 
Sbjct: 877 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 818

                                                                       
Query: 293 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 352
           ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| | |||||| 
Sbjct: 817 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaaaagagtga 758

                                                                       
Query: 353 tagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcacatcgtagcct 412
           || |||||||||||||| |||||||| || || || || || ||||| ||||| ||||||
Sbjct: 757 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 698

                                     
Query: 413 gtctttcggagtgacttgggtaactc 438
           ||||| ||||||||||||| ||||||
Sbjct: 697 gtcttccggagtgacttggttaactc 672



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>ref|XM_479284.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1227

 Score =  167 bits (84), Expect = 4e-38
 Identities = 183/216 (84%)
 Strand = Plus / Minus

                                                                       
Query: 216 cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 275
           ||||||||| |  ||| |||||||| |  |||||||| || ||||| |||||||||||||
Sbjct: 970 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 911

                                                                       
Query: 276 cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 335
           | ||||  ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 910 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 851

                                                                       
Query: 336 cgaaccggagagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaag 395
           ||||||| ||||| || || |||||||||||||| || ||||| || || || || || |
Sbjct: 850 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 791

                                               
Query: 396 gcatcacatcgtagcctgtctttcggagtgacttgg 431
           |||| ||||||||||||||||| |||||||||||||
Sbjct: 790 gcattacatcgtagcctgtcttccggagtgacttgg 755



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  167 bits (84), Expect = 4e-38
 Identities = 183/216 (84%)
 Strand = Plus / Plus

                                                                            
Query: 216      cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 275
                ||||||||| |  ||| |||||||| |  |||||||| || ||||| |||||||||||||
Sbjct: 26565338 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 26565397

                                                                            
Query: 276      cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 335
                | ||||  ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 26565398 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 26565457

                                                                            
Query: 336      cgaaccggagagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaag 395
                ||||||| ||||| || || |||||||||||||| || ||||| || || || || || |
Sbjct: 26565458 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 26565517

                                                    
Query: 396      gcatcacatcgtagcctgtctttcggagtgacttgg 431
                |||| ||||||||||||||||| |||||||||||||
Sbjct: 26565518 gcattacatcgtagcctgtcttccggagtgacttgg 26565553



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>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1340_C08
          Length = 192167

 Score =  167 bits (84), Expect = 4e-38
 Identities = 183/216 (84%)
 Strand = Plus / Plus

                                                                          
Query: 216    cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 275
              ||||||||| |  ||| |||||||| |  |||||||| || ||||| |||||||||||||
Sbjct: 110609 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 110668

                                                                          
Query: 276    cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 335
              | ||||  ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 110669 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 110728

                                                                          
Query: 336    cgaaccggagagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaag 395
              ||||||| ||||| || || |||||||||||||| || ||||| || || || || || |
Sbjct: 110729 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 110788

                                                  
Query: 396    gcatcacatcgtagcctgtctttcggagtgacttgg 431
              |||| ||||||||||||||||| |||||||||||||
Sbjct: 110789 gcattacatcgtagcctgtcttccggagtgacttgg 110824



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>dbj|AK067207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M06, full
           insert sequence
          Length = 1228

 Score =  167 bits (84), Expect = 4e-38
 Identities = 183/216 (84%)
 Strand = Plus / Minus

                                                                       
Query: 216 cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 275
           ||||||||| |  ||| |||||||| |  |||||||| || ||||| |||||||||||||
Sbjct: 971 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 912

                                                                       
Query: 276 cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 335
           | ||||  ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 911 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 852

                                                                       
Query: 336 cgaaccggagagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaag 395
           ||||||| ||||| || || |||||||||||||| || ||||| || || || || || |
Sbjct: 851 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 792

                                               
Query: 396 gcatcacatcgtagcctgtctttcggagtgacttgg 431
           |||| ||||||||||||||||| |||||||||||||
Sbjct: 791 gcattacatcgtagcctgtcttccggagtgacttgg 756



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                            
Query: 284      gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343
                |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || |||||||  
Sbjct: 14273048 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 14272989

                                                                            
Query: 344      agagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcaca 403
                ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||  ||||
Sbjct: 14272988 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 14272929

                        
Query: 404      tcgtagcc 411
                ||| ||||
Sbjct: 14272928 tcgaagcc 14272921



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>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete
             sequence
          Length = 158714

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                         
Query: 284   gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343
             |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || |||||||  
Sbjct: 22277 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 22218

                                                                         
Query: 344   agagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcaca 403
             ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||  ||||
Sbjct: 22217 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 22158

                     
Query: 404   tcgtagcc 411
             ||| ||||
Sbjct: 22157 tcgaagcc 22150



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>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNAb0012F18, complete sequence
          Length = 122159

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                         
Query: 284   gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343
             |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || |||||||  
Sbjct: 84436 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 84377

                                                                         
Query: 344   agagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcaca 403
             ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||  ||||
Sbjct: 84376 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 84317

                     
Query: 404   tcgtagcc 411
             ||| ||||
Sbjct: 84316 tcgaagcc 84309



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                            
Query: 284      gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343
                |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || |||||||  
Sbjct: 14268023 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 14267964

                                                                            
Query: 344      agagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcaca 403
                ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||  ||||
Sbjct: 14267963 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 14267904

                        
Query: 404      tcgtagcc 411
                ||| ||||
Sbjct: 14267903 tcgaagcc 14267896



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>dbj|AK099464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023I17, full
           insert sequence
          Length = 1114

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                       
Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343
           |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || |||||||  
Sbjct: 809 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 750

                                                                       
Query: 344 agagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcaca 403
           ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||  ||||
Sbjct: 749 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 690

                   
Query: 404 tcgtagcc 411
           ||| ||||
Sbjct: 689 tcgaagcc 682



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>dbj|AK062116.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C05, full
           insert sequence
          Length = 1164

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                       
Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343
           |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || |||||||  
Sbjct: 871 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 812

                                                                       
Query: 344 agagagtggtagtacacatagttgcacacgaaccgtccggcgtcatccgaaggcatcaca 403
           ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||  ||||
Sbjct: 811 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 752

                   
Query: 404 tcgtagcc 411
           ||| ||||
Sbjct: 751 tcgaagcc 744



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 168     aactttacatcttccaggtcaa 189
               ||||||||||||||||||||||
Sbjct: 8184579 aactttacatcttccaggtcaa 8184558



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>dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1047A05
          Length = 157517

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 168    aactttacatcttccaggtcaa 189
              ||||||||||||||||||||||
Sbjct: 152890 aactttacatcttccaggtcaa 152869



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>dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1449_H02
          Length = 117860

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 168   aactttacatcttccaggtcaa 189
             ||||||||||||||||||||||
Sbjct: 17261 aactttacatcttccaggtcaa 17240



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>ref|XM_741731.1| Aspergillus fumigatus Af293 endo-1,4-beta-mannosidase (Afu7g01070)
           partial mRNA
          Length = 1434

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 316 cttgatgccgtgctgctccgc 336
           |||||||||||||||||||||
Sbjct: 693 cttgatgccgtgctgctccgc 673



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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 372     cgaaccgtccggcgtcatccg 392
               |||||||||||||||||||||
Sbjct: 3569112 cgaaccgtccggcgtcatccg 3569132



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>gb|AC007361.2| Homo sapiens BAC clone RP11-144P23 from 7, complete sequence
          Length = 36465

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   tttttctctccccttaaata 97
            ||||||||||||||||||||
Sbjct: 1325 tttttctctccccttaaata 1306



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>ref|XM_500170.1| Yarrowia lipolytica CLIB122, YALI0A17578g predicted mRNA
          Length = 3702

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 392  gaaggcatcacatcgtagcc 411
            ||||||||||||||||||||
Sbjct: 2957 gaaggcatcacatcgtagcc 2938



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>gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, complete sequence
          Length = 253504

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    cacatgcacaaacagagact 317
              ||||||||||||||||||||
Sbjct: 186958 cacatgcacaaacagagact 186977



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>emb|AL954851.5| Zebrafish DNA sequence from clone CH211-280J3, complete sequence
          Length = 177221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 288   agaagaggggcacatgcacaaacagaga 315
             ||||||||  ||||||||||||||||||
Sbjct: 18089 agaagaggttcacatgcacaaacagaga 18116



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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 392     gaaggcatcacatcgtagcc 411
               ||||||||||||||||||||
Sbjct: 1816198 gaaggcatcacatcgtagcc 1816179


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,923,340
Number of Sequences: 3902068
Number of extensions: 2923340
Number of successful extensions: 54640
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54471
Number of HSP's gapped (non-prelim): 169
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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