ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18i06 |
|---|---|
| Clone Library Name | barley_pub |
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 294 bits (752), Expect = 2e-79 Identities = 139/166 (83%), Positives = 147/166 (88%) Frame = -1 Query: 658 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEDNDFAELYMFK 479 VGIDEWWRNEQFWVIGG+SAHLFAVFQG+LKVLAGIDT+FTVTSKASDED DFAELY+FK Sbjct: 900 VGIDEWWRNEQFWVIGGVSAHLFAVFQGILKVLAGIDTNFTVTSKASDEDGDFAELYLFK 959 Query: 478 WXXXXXXXXXXXXXXLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMG 299 W LVGVVAG SYAIN GYQSWGPLFGKLFFAFWVI+HLYPFLKGLMG Sbjct: 960 WTTLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG 1019 Query: 298 RQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQMCGINC 161 RQNRTPTIVVVW++LLASIFSLLWVRIDPFT+RVTGPDI CGINC Sbjct: 1020 RQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDILECGINC 1065
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 264 bits (674), Expect = 2e-70 Identities = 125/166 (75%), Positives = 137/166 (82%) Frame = -1 Query: 658 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEDNDFAELYMFK 479 V I+EWWRNEQFWVIGGISAHLFAV QGLLK+LAGIDT+FTVTSKA+D+D DF ELY FK Sbjct: 862 VSIEEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDDD-DFGELYAFK 920 Query: 478 WXXXXXXXXXXXXXXLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMG 299 W +VGVVAG S AIN GYQSWGPLFGKLFF+FWVI+HLYPFLKGLMG Sbjct: 921 WTTLLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMG 980 Query: 298 RQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQMCGINC 161 RQNRTPTIVV+W++LLASIFSLLWVRIDPF + GPD CGINC Sbjct: 981 RQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTSKCGINC 1026
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 250 bits (638), Expect = 3e-66 Identities = 116/150 (77%), Positives = 129/150 (86%) Frame = -1 Query: 658 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEDNDFAELYMFK 479 V I++WWRNEQFWVIGG SAHLFAVFQGLLKVLAGIDT+FTVTSKA+DED DFAELY+FK Sbjct: 915 VSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKATDEDGDFAELYIFK 974 Query: 478 WXXXXXXXXXXXXXXLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMG 299 W L+G+VAG SYA+N GYQSWGPLFGKLFFA WVI HLYPFLKGL+G Sbjct: 975 WTALLIPPTTVLLVNLIGIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLG 1034 Query: 298 RQNRTPTIVVVWAILLASIFSLLWVRIDPF 209 RQNRTPTIV+VW++LLASIFSLLWVRI+PF Sbjct: 1035 RQNRTPTIVIVWSVLLASIFSLLWVRINPF 1064
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 249 bits (637), Expect = 4e-66 Identities = 119/167 (71%), Positives = 138/167 (82%), Gaps = 1/167 (0%) Frame = -1 Query: 658 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSK-ASDEDNDFAELYMF 482 V I++ WRNEQFWVIGG+SAHLFAVFQGLLKVL G+DT+FTVTSK ASDE ++F +LY+F Sbjct: 883 VSINDLWRNEQFWVIGGVSAHLFAVFQGLLKVLFGVDTNFTVTSKGASDEADEFGDLYLF 942 Query: 481 KWXXXXXXXXXXXXXXLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGLM 302 KW +VGVVAG S AIN GY SWGPLFGKLFFAFWVI+HLYPFLKGLM Sbjct: 943 KWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLM 1002 Query: 301 GRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQMCGINC 161 GRQNRTPTIVV+W+ILLASIFSL+WVRIDPF + TGP ++ CG++C Sbjct: 1003 GRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPLLKQCGVDC 1049
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 246 bits (627), Expect = 6e-65 Identities = 115/152 (75%), Positives = 127/152 (83%) Frame = -1 Query: 658 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEDNDFAELYMFK 479 V +++WWRNEQFWVIGG SAHLFAVFQGLLKV AGIDT+FTVTSKASDED DFAELY+FK Sbjct: 902 VALEDWWRNEQFWVIGGTSAHLFAVFQGLLKVFAGIDTNFTVTSKASDEDGDFAELYVFK 961 Query: 478 WXXXXXXXXXXXXXXLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMG 299 W LVG+VAG SYAIN GYQSWGPL GKL FAFWV+ HLYPFLKGL+G Sbjct: 962 WTSLLIPPTTILLVNLVGIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLG 1021 Query: 298 RQNRTPTIVVVWAILLASIFSLLWVRIDPFTT 203 RQNRTPTIV+VW+ LLASIFSLLWVRI+PF + Sbjct: 1022 RQNRTPTIVIVWSALLASIFSLLWVRINPFVS 1053
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 238 bits (606), Expect = 2e-62 Identities = 108/166 (65%), Positives = 137/166 (82%) Frame = -1 Query: 658 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEDNDFAELYMFK 479 VGID+WWRNEQFWVIGG+SAHLFA+FQGLLKVLAG+DT+FTVTSKA+D D +F++LY+FK Sbjct: 920 VGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVDTNFTVTSKAAD-DGEFSDLYLFK 978 Query: 478 WXXXXXXXXXXXXXXLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMG 299 W ++GV+ G S AI+ GY SWGPLFG+LFFA WVIIHLYPFLKGL+G Sbjct: 979 WTSLLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLG 1038 Query: 298 RQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQMCGINC 161 +Q+R PTI+VVW+ILLASI +LLWVR++PF + GP +++CG++C Sbjct: 1039 KQDRMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1083
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 237 bits (605), Expect = 2e-62 Identities = 107/166 (64%), Positives = 138/166 (83%) Frame = -1 Query: 658 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEDNDFAELYMFK 479 VGID+WWRNEQFWVIGG+SAHLFA+FQGLLKVLAG++T+FTVTSKA+D D +F+ELY+FK Sbjct: 905 VGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVETNFTVTSKAAD-DGEFSELYIFK 963 Query: 478 WXXXXXXXXXXXXXXLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMG 299 W ++GV+ G S AI+ GY SWGPLFG+LFFAFWVI+HLYPFLKGL+G Sbjct: 964 WTSLLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLG 1023 Query: 298 RQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQMCGINC 161 +Q+R PTI++VW+ILLASI +LLWVR++PF + GP +++CG++C Sbjct: 1024 KQDRMPTIILVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1068
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 237 bits (604), Expect = 3e-62 Identities = 106/166 (63%), Positives = 137/166 (82%) Frame = -1 Query: 658 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEDNDFAELYMFK 479 +GID+WWRNEQFWVIGG+S+HLFA+FQGLLKVLAG+ T+FTVTSKA+D D +F+ELY+FK Sbjct: 923 IGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAAD-DGEFSELYIFK 981 Query: 478 WXXXXXXXXXXXXXXLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMG 299 W +VGV+ G S AIN GY SWGPLFG+LFFA WVI+HLYPFLKGL+G Sbjct: 982 WTSLLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLG 1041 Query: 298 RQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQMCGINC 161 +Q+R PTI++VW+ILLASI +LLWVR++PF ++ GP +++CG++C Sbjct: 1042 KQDRVPTIILVWSILLASILTLLWVRVNPFVSK-DGPVLEICGLDC 1086
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 232 bits (592), Expect = 6e-61 Identities = 105/166 (63%), Positives = 135/166 (81%) Frame = -1 Query: 658 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEDNDFAELYMFK 479 VGID+WWRNEQFWVIGG S+HLFA+FQGLLKVLAG++T+FTVTSKA+D D F+ELY+FK Sbjct: 919 VGIDDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAAD-DGAFSELYIFK 977 Query: 478 WXXXXXXXXXXXXXXLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMG 299 W ++GV+ G S AI+ GY SWGPLFG+LFFA WVI+HLYPFLKG++G Sbjct: 978 WTTLLIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLG 1037 Query: 298 RQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQMCGINC 161 +Q++ PTI+VVW+ILLASI +LLWVR++PF + GP +++CG+NC Sbjct: 1038 KQDKMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPVLEICGLNC 1082
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 225 bits (574), Expect = 8e-59 Identities = 108/166 (65%), Positives = 131/166 (78%) Frame = -1 Query: 658 VGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKASDEDNDFAELYMFK 479 V I++ WRNEQFWVIGG+SAHLFAVFQG LK+LAG+DT+FTVTSK +D D +F ELY+ K Sbjct: 819 VSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKTAD-DLEFGELYIVK 877 Query: 478 WXXXXXXXXXXXXXXLVGVVAGTSYAINIGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMG 299 W LVGVVAG S A+N GY++WGPLFGK+FFAFWVI+HLYPFLKGLMG Sbjct: 878 WTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMG 937 Query: 298 RQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDIQMCGINC 161 RQNRTPTIV++W+ILLAS+FSL+WVRI+PF ++ D +NC Sbjct: 938 RQNRTPTIVILWSILLASVFSLVWVRINPFVSKT---DTTSLSLNC 980
>ACKA_DEIRA (Q9RR92) Acetate kinase (EC 2.7.2.1) (Acetokinase)| Length = 398 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = +3 Query: 213 GSMRTHSKEKMDARRMAQTTTMVGVRFCRPISPLRNGYKWIITQKAKKSFPKSGPH 380 G H E+ A + + VR C P++PL N + + A+++FPK PH Sbjct: 83 GHRVVHGGERFSAPVLVTPEVLEAVRACVPLAPLHNPANIVGIEAAQQAFPKL-PH 137
>Y2025_ARCFU (O28254) Hypothetical protein AF2025| Length = 181 Score = 30.0 bits (66), Expect = 6.3 Identities = 14/58 (24%), Positives = 30/58 (51%) Frame = -1 Query: 370 LFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRV 197 LFG L +I L F++G++ +++ +W ++ A ++ LL + + TR+ Sbjct: 35 LFGFLALVLLNVIRLEEFMRGIVA----IVSLIAIWVLMTAGVYILLSMPLPELPTRI 88
>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic| region Length = 636 Score = 29.6 bits (65), Expect = 8.3 Identities = 18/69 (26%), Positives = 37/69 (53%) Frame = -2 Query: 324 THSSRG*WDGRTARRPSLSSGPSFLHPSSPCCGFASTRSPHESLGQISKCVASTARSVQN 145 T+SS+ +D T+ ++ S +SP +S S SL + ++S+A S+ + Sbjct: 102 TYSSQ--YDPATSSYSIITPSMSIFSSTSPMSSSSSITSEWSSLTSTTPTLSSSATSLSS 159 Query: 144 NWNSIATHS 118 +W+S+++ S Sbjct: 160 SWSSLSSPS 168
>DNAE2_PSEF5 (Q4KAD4) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1034 Score = 29.6 bits (65), Expect = 8.3 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +1 Query: 202 VW*TGRCEPTARRRWMQEGWPRR 270 +W TG EP A+ RW+Q+ +P+R Sbjct: 122 LWLTGAGEPLAQGRWLQQVFPQR 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,810,805 Number of Sequences: 219361 Number of extensions: 2269777 Number of successful extensions: 6202 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5882 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6188 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
