Clone Name | rbasd18i03 |
---|---|
Clone Library Name | barley_pub |
>emb|CR786580.6| Human DNA sequence from clone RP11-764K9 on chromosome 9 Contains two novel pseudogenes, a novel gene, a pseudogene similar to part of double homeobox, 4 (DUX4), a FSHD region gene 1 (FRG1) pseudogene and four CpG islands, complete sequence Length = 191980 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 79 tcttttgatgtcttttctaaaaa 101 ||||||||||||||||||||||| Sbjct: 49409 tcttttgatgtcttttctaaaaa 49387
>emb|AL441988.11| Human DNA sequence from clone RP11-348I14 on chromosome 20 Contains the 5' end of a novel gene, the C20orf80 gene for a protein similar to FSHD region gene 1 (FRG1), the MLLT10L gene for myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) (translocated to 10)-like pseudogene, a novel gene and two CpG islands, complete sequence Length = 69918 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 79 tcttttgatgtcttttctaaaaa 101 ||||||||||||||||||||||| Sbjct: 18456 tcttttgatgtcttttctaaaaa 18434
>emb|AL353763.14| Human DNA sequence from clone RP11-87H9 on chromosome 9 Contains a pseudogene similar to part of FSHD region gene 1 (FRG1), a pseudogene similar to part of phosphoglucomutase 5 (PGM5) and a CpG island, complete sequence Length = 157266 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 79 tcttttgatgtcttttctaaaaa 101 ||||||||||||||||||||||| Sbjct: 90002 tcttttgatgtcttttctaaaaa 90024
>emb|AL445925.19| Human DNA sequence from clone RP11-403A15 on chromosome 9 Contains a pseudogene similar to part of FSHD region gene 1 (FSG1) (FRG1), a pseudogene similar to part of phosphoglucomutase 5 (PGRM) (PGM5) and four CpG islands, complete sequence Length = 196461 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 79 tcttttgatgtcttttctaaaaa 101 ||||||||||||||||||||||| Sbjct: 55126 tcttttgatgtcttttctaaaaa 55104
>gb|AC116618.4| Homo sapiens BAC clone RP11-98L17 from 4, complete sequence Length = 153040 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 79 tcttttgatgtcttttctaaaaa 101 ||||||||||||||||||||||| Sbjct: 104268 tcttttgatgtcttttctaaaaa 104246
>gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chromosome 20, complete sequence Length = 162793 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 79 tcttttgatgtcttttctaaaaa 101 ||||||||||||||||||||||| Sbjct: 5679 tcttttgatgtcttttctaaaaa 5701
>emb|CR387925.5| Human DNA sequence from clone RP11-58A12 on chromosome 9, complete sequence Length = 172519 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 79 tcttttgatgtcttttctaaaaa 101 ||||||||||||||||||||||| Sbjct: 25896 tcttttgatgtcttttctaaaaa 25874
>emb|AL592183.10| Human DNA sequence from clone RP11-297D8 on chromosome 22, complete sequence Length = 179198 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 79 tcttttgatgtcttttctaaaaa 101 ||||||||||||||||||||||| Sbjct: 109003 tcttttgatgtcttttctaaaaa 109025
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 618 ccgccatcaatacggtctacag 639 |||||||||||||||||||||| Sbjct: 3001046 ccgccatcaatacggtctacag 3001067
>gb|AC144517.7| Medicago truncatula clone mth2-13k17, complete sequence Length = 107710 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 351 actgaaaatttgtaaatcaact 372 |||||||||||||||||||||| Sbjct: 51078 actgaaaatttgtaaatcaact 51099
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 618 ccgccatcaatacggtctacag 639 |||||||||||||||||||||| Sbjct: 2882546 ccgccatcaatacggtctacag 2882567
>gb|AC155242.2| Mus musculus BAC clone RP24-496G24 from chromosome 17, complete sequence Length = 132408 Score = 44.1 bits (22), Expect = 0.58 Identities = 27/29 (93%) Strand = Plus / Minus Query: 2 ttttatttttgactggtctntgttgtctt 30 |||| |||||||||||||| ||||||||| Sbjct: 47113 ttttttttttgactggtctgtgttgtctt 47085
>gb|AC172751.1| Mus musculus BAC clone RP23-341F9 from chromosome 14, complete sequence Length = 200222 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 561 attcaccagatttcccatcgtaagat 586 |||||||||||||||||||| ||||| Sbjct: 36312 attcaccagatttcccatcgcaagat 36337
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 gaaaatttgtaaatcaactat 374 ||||||||||||||||||||| Sbjct: 1637435 gaaaatttgtaaatcaactat 1637415
>gb|AC096888.2| Homo sapiens chromosome 3 clone RP11-14D22, complete sequence Length = 176421 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 tcctcttttgatgtcttttct 96 ||||||||||||||||||||| Sbjct: 128271 tcctcttttgatgtcttttct 128251
>emb|AL645852.23| Mouse DNA sequence from clone RP23-354K2 on chromosome 11, complete sequence Length = 158089 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 aaggaaaactgtctctgtagt 333 ||||||||||||||||||||| Sbjct: 92225 aaggaaaactgtctctgtagt 92205
>gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome 17, complete sequence Length = 198403 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 atatccatatgcatcagaca 308 |||||||||||||||||||| Sbjct: 53884 atatccatatgcatcagaca 53865
>emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chromosome 12, complete sequence Length = 216921 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 actgaaaatttgtaaatcaa 370 |||||||||||||||||||| Sbjct: 142170 actgaaaatttgtaaatcaa 142151
>emb|AL513024.9| Human DNA sequence from clone RP11-555B19 on chromosome 9, complete sequence Length = 80957 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aaaatttgtaaatcaactat 374 |||||||||||||||||||| Sbjct: 62514 aaaatttgtaaatcaactat 62495
>emb|AL499609.9| Human DNA sequence from clone RP11-309N23 on chromosome 1, complete sequence Length = 136515 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ttgatgtcttttctaaaaaa 102 |||||||||||||||||||| Sbjct: 39921 ttgatgtcttttctaaaaaa 39940
>emb|AL358453.8| Human DNA sequence from clone RP11-115M14 on chromosome 1 Contains a cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene, complete sequence Length = 108934 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 aaacatatatccatatgcatcaga 306 |||||||| ||||||||||||||| Sbjct: 10564 aaacatatttccatatgcatcaga 10541
>gb|AY321333.1| Rattus norvegicus Ac2-120 mRNA, complete cds Length = 6315 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 466 aagaaaagacagtttttcatcagg 489 |||||||||||||| ||||||||| Sbjct: 3028 aagaaaagacagttgttcatcagg 3051
>emb|CR932962.2| Medicago truncatula chromosome 5 clone mte1-70c24, COMPLETE SEQUENCE Length = 128704 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 tgaaaatttgtaaatcaact 372 |||||||||||||||||||| Sbjct: 26079 tgaaaatttgtaaatcaact 26098
>gb|AC009757.8| Homo sapiens chromosome 5, clone RP11-37M16, complete sequence Length = 166918 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 ccatatgcatcagacaaact 312 |||||||||||||||||||| Sbjct: 138798 ccatatgcatcagacaaact 138817
>gb|AC008825.6| Homo sapiens chromosome 5 clone CTD-2134P3, complete sequence Length = 155495 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 ccatatgcatcagacaaact 312 |||||||||||||||||||| Sbjct: 72632 ccatatgcatcagacaaact 72651
>gb|AC073160.8| Homo sapiens chromosome 10 clone RP11-348G8, complete sequence Length = 189817 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 tttaaaagaagttttgtaaacata 289 |||||||||| ||||||||||||| Sbjct: 21197 tttaaaagaatttttgtaaacata 21174
>gb|AC093671.3| Homo sapiens BAC clone RP11-542P2 from 4, complete sequence Length = 186370 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 ttaaactgaaaatttgtaaa 366 |||||||||||||||||||| Sbjct: 168819 ttaaactgaaaatttgtaaa 168838
>gb|AY997971.1| Linanthus maculatus voucher Johnson 97-002 BRY tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergeneric spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast Length = 990 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 aaacatatatccatatgcat 302 |||||||||||||||||||| Sbjct: 258 aaacatatatccatatgcat 277
>gb|AY997970.1| Linanthus filiformis voucher Johnson 93-015 WS tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergeneric spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast Length = 962 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 aaacatatatccatatgcat 302 |||||||||||||||||||| Sbjct: 252 aaacatatatccatatgcat 271
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tgcaactgtagcctgcatat 147 |||||||||||||||||||| Sbjct: 996676 tgcaactgtagcctgcatat 996657
>gb|AF208174.1| Gilia filiformis tRNA-Leu (trnL) and tRNA-Phe (trnF) genes, partial sequence; chloroplast genes for chloroplast products Length = 963 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 aaacatatatccatatgcat 302 |||||||||||||||||||| Sbjct: 252 aaacatatatccatatgcat 271
>gb|AC019183.3|AC019183 Homo sapiens BAC clone RP11-291G24 from 18, complete sequence Length = 183082 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 taaatcaaacaagaccaaaa 182 |||||||||||||||||||| Sbjct: 118935 taaatcaaacaagaccaaaa 118916
>gb|AC069070.19| Homo sapiens 3 BAC RP11-575H20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154828 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 taaaagaaaagacagttttt 482 |||||||||||||||||||| Sbjct: 61917 taaaagaaaagacagttttt 61898
>ref|XM_222831.3| PREDICTED: Rattus norvegicus coagulation factor 5 (F5), mRNA Length = 6315 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 466 aagaaaagacagtttttcatcagg 489 |||||||||||||| ||||||||| Sbjct: 3028 aagaaaagacagttgttcatcagg 3051
>dbj|AP003810.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1119_A04 Length = 128906 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tgcaactgtagcctgcatat 147 |||||||||||||||||||| Sbjct: 101023 tgcaactgtagcctgcatat 101004
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttttctaaaaaagagagcct 110 |||||||||||||||||||| Sbjct: 1867143 ttttctaaaaaagagagcct 1867162
>emb|BX537327.7| Mouse DNA sequence from clone RP23-463N9 on chromosome 4, complete sequence Length = 103859 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 cataaaagaaaagacagttt 480 |||||||||||||||||||| Sbjct: 4585 cataaaagaaaagacagttt 4604
>emb|AL935138.7| Mouse DNA sequence from clone RP23-222H15 on chromosome 2, complete sequence Length = 139189 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 aaactaaggaaaactgtctc 327 |||||||||||||||||||| Sbjct: 100954 aaactaaggaaaactgtctc 100935
>emb|AL590762.1|HSXDPA Homo sapiens chromosome X sequence from 6 PACs 1 BAC and 1 cosmid, region GJB1-DXS559 map Xq13.1; segment 1/2, complete sequence Length = 305000 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 gacagtttttcatcaggtgg 492 |||||||||||||||||||| Sbjct: 78727 gacagtttttcatcaggtgg 78746
>gb|AC131182.3| Homo sapiens BAC clone RP11-392B6 from 4, complete sequence Length = 101396 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 atatatatatcagaacggataaat 167 ||||||||||||||| |||||||| Sbjct: 87893 atatatatatcagaagggataaat 87916 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,977,570 Number of Sequences: 3902068 Number of extensions: 7977570 Number of successful extensions: 131339 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 131084 Number of HSP's gapped (non-prelim): 255 length of query: 666 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 643 effective length of database: 17,143,297,704 effective search space: 11023140423672 effective search space used: 11023140423672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)