ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18i03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CR786580.6| Human DNA sequence from clone RP11-764K9 on chro... 46 0.15
2emb|AL441988.11| Human DNA sequence from clone RP11-348I14 on ch... 46 0.15
3emb|AL353763.14| Human DNA sequence from clone RP11-87H9 on chro... 46 0.15
4emb|AL445925.19| Human DNA sequence from clone RP11-403A15 on ch... 46 0.15
5gb|AC116618.4| Homo sapiens BAC clone RP11-98L17 from 4, complet... 46 0.15
6gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chrom... 46 0.15
7emb|CR387925.5| Human DNA sequence from clone RP11-58A12 on chro... 46 0.15
8emb|AL592183.10| Human DNA sequence from clone RP11-297D8 on chr... 46 0.15
9gb|AE014075.1| Escherichia coli CFT073, complete genome 44 0.58
10gb|AC144517.7| Medicago truncatula clone mth2-13k17, complete se... 44 0.58
11gb|CP000243.1| Escherichia coli UTI89, complete genome 44 0.58
12gb|AC155242.2| Mus musculus BAC clone RP24-496G24 from chromosom... 44 0.58
13gb|AC172751.1| Mus musculus BAC clone RP23-341F9 from chromosome... 44 0.58
14gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome 42 2.3
15gb|AC096888.2| Homo sapiens chromosome 3 clone RP11-14D22, compl... 42 2.3
16emb|AL645852.23| Mouse DNA sequence from clone RP23-354K2 on chr... 42 2.3
17gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome... 40 9.1
18emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chro... 40 9.1
19emb|AL513024.9| Human DNA sequence from clone RP11-555B19 on chr... 40 9.1
20emb|AL499609.9| Human DNA sequence from clone RP11-309N23 on chr... 40 9.1
21emb|AL358453.8| Human DNA sequence from clone RP11-115M14 on chr... 40 9.1
22gb|AY321333.1| Rattus norvegicus Ac2-120 mRNA, complete cds 40 9.1
23emb|CR932962.2| Medicago truncatula chromosome 5 clone mte1-70c2... 40 9.1
24gb|AC009757.8| Homo sapiens chromosome 5, clone RP11-37M16, comp... 40 9.1
25gb|AC008825.6| Homo sapiens chromosome 5 clone CTD-2134P3, compl... 40 9.1
26gb|AC073160.8| Homo sapiens chromosome 10 clone RP11-348G8, comp... 40 9.1
27gb|AC093671.3| Homo sapiens BAC clone RP11-542P2 from 4, complet... 40 9.1
28gb|AY997971.1| Linanthus maculatus voucher Johnson 97-002 BRY tR... 40 9.1
29gb|AY997970.1| Linanthus filiformis voucher Johnson 93-015 WS tR... 40 9.1
30dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
31gb|AF208174.1| Gilia filiformis tRNA-Leu (trnL) and tRNA-Phe (tr... 40 9.1
32gb|AC019183.3|AC019183 Homo sapiens BAC clone RP11-291G24 from 1... 40 9.1
33gb|AC069070.19| Homo sapiens 3 BAC RP11-575H20 (Roswell Park Can... 40 9.1
34ref|XM_222831.3| PREDICTED: Rattus norvegicus coagulation factor... 40 9.1
35dbj|AP003810.6| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
36dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 40 9.1
37emb|BX537327.7| Mouse DNA sequence from clone RP23-463N9 on chro... 40 9.1
38emb|AL935138.7| Mouse DNA sequence from clone RP23-222H15 on chr... 40 9.1
39emb|AL590762.1|HSXDPA Homo sapiens chromosome X sequence from 6... 40 9.1
40gb|AC131182.3| Homo sapiens BAC clone RP11-392B6 from 4, complet... 40 9.1 
>emb|CR786580.6| Human DNA sequence from clone RP11-764K9 on chromosome 9 Contains two
             novel pseudogenes, a novel gene, a pseudogene similar to
             part of double homeobox, 4 (DUX4), a FSHD region gene 1
             (FRG1) pseudogene and four CpG islands, complete sequence
          Length = 191980

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 79    tcttttgatgtcttttctaaaaa 101
             |||||||||||||||||||||||
Sbjct: 49409 tcttttgatgtcttttctaaaaa 49387
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>emb|AL441988.11| Human DNA sequence from clone RP11-348I14 on chromosome 20 Contains the
             5' end of a novel gene, the C20orf80 gene for a protein
             similar to FSHD region gene 1 (FRG1), the MLLT10L gene for
             myeloid/lymphoid or mixed-lineage leukemia (trithorax
             homolog, Drosophila) (translocated to 10)-like pseudogene,
             a novel gene and two CpG islands, complete sequence
          Length = 69918

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 79    tcttttgatgtcttttctaaaaa 101
             |||||||||||||||||||||||
Sbjct: 18456 tcttttgatgtcttttctaaaaa 18434
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>emb|AL353763.14| Human DNA sequence from clone RP11-87H9 on chromosome 9 Contains a
             pseudogene similar to part of FSHD region gene 1 (FRG1), a
             pseudogene similar to part of phosphoglucomutase 5 (PGM5)
             and a CpG island, complete sequence
          Length = 157266

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 79    tcttttgatgtcttttctaaaaa 101
             |||||||||||||||||||||||
Sbjct: 90002 tcttttgatgtcttttctaaaaa 90024
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>emb|AL445925.19| Human DNA sequence from clone RP11-403A15 on chromosome 9 Contains a
             pseudogene similar to part of FSHD region gene 1 (FSG1)
             (FRG1), a pseudogene similar to part of phosphoglucomutase
             5 (PGRM) (PGM5) and four CpG islands, complete sequence
          Length = 196461

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 79    tcttttgatgtcttttctaaaaa 101
             |||||||||||||||||||||||
Sbjct: 55126 tcttttgatgtcttttctaaaaa 55104
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>gb|AC116618.4| Homo sapiens BAC clone RP11-98L17 from 4, complete sequence
          Length = 153040

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 79     tcttttgatgtcttttctaaaaa 101
              |||||||||||||||||||||||
Sbjct: 104268 tcttttgatgtcttttctaaaaa 104246
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>gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chromosome 20, complete
            sequence
          Length = 162793

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 79   tcttttgatgtcttttctaaaaa 101
            |||||||||||||||||||||||
Sbjct: 5679 tcttttgatgtcttttctaaaaa 5701
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>emb|CR387925.5| Human DNA sequence from clone RP11-58A12 on chromosome 9, complete
             sequence
          Length = 172519

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 79    tcttttgatgtcttttctaaaaa 101
             |||||||||||||||||||||||
Sbjct: 25896 tcttttgatgtcttttctaaaaa 25874
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>emb|AL592183.10| Human DNA sequence from clone RP11-297D8 on chromosome 22, complete
              sequence
          Length = 179198

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 79     tcttttgatgtcttttctaaaaa 101
              |||||||||||||||||||||||
Sbjct: 109003 tcttttgatgtcttttctaaaaa 109025
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 618     ccgccatcaatacggtctacag 639
               ||||||||||||||||||||||
Sbjct: 3001046 ccgccatcaatacggtctacag 3001067
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>gb|AC144517.7| Medicago truncatula clone mth2-13k17, complete sequence
          Length = 107710

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 351   actgaaaatttgtaaatcaact 372
             ||||||||||||||||||||||
Sbjct: 51078 actgaaaatttgtaaatcaact 51099
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 618     ccgccatcaatacggtctacag 639
               ||||||||||||||||||||||
Sbjct: 2882546 ccgccatcaatacggtctacag 2882567
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>gb|AC155242.2| Mus musculus BAC clone RP24-496G24 from chromosome 17, complete
             sequence
          Length = 132408

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 2     ttttatttttgactggtctntgttgtctt 30
             |||| |||||||||||||| |||||||||
Sbjct: 47113 ttttttttttgactggtctgtgttgtctt 47085
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>gb|AC172751.1| Mus musculus BAC clone RP23-341F9 from chromosome 14, complete sequence
          Length = 200222

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 561   attcaccagatttcccatcgtaagat 586
             |||||||||||||||||||| |||||
Sbjct: 36312 attcaccagatttcccatcgcaagat 36337
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>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 354     gaaaatttgtaaatcaactat 374
               |||||||||||||||||||||
Sbjct: 1637435 gaaaatttgtaaatcaactat 1637415
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>gb|AC096888.2| Homo sapiens chromosome 3 clone RP11-14D22, complete sequence
          Length = 176421

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 76     tcctcttttgatgtcttttct 96
              |||||||||||||||||||||
Sbjct: 128271 tcctcttttgatgtcttttct 128251
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>emb|AL645852.23| Mouse DNA sequence from clone RP23-354K2 on chromosome 11, complete
             sequence
          Length = 158089

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 313   aaggaaaactgtctctgtagt 333
             |||||||||||||||||||||
Sbjct: 92225 aaggaaaactgtctctgtagt 92205
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>gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome 17, complete sequence
          Length = 198403

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   atatccatatgcatcagaca 308
             ||||||||||||||||||||
Sbjct: 53884 atatccatatgcatcagaca 53865
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>emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chromosome 12, complete
              sequence
          Length = 216921

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 351    actgaaaatttgtaaatcaa 370
              ||||||||||||||||||||
Sbjct: 142170 actgaaaatttgtaaatcaa 142151
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>emb|AL513024.9| Human DNA sequence from clone RP11-555B19 on chromosome 9, complete
             sequence
          Length = 80957

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   aaaatttgtaaatcaactat 374
             ||||||||||||||||||||
Sbjct: 62514 aaaatttgtaaatcaactat 62495
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>emb|AL499609.9| Human DNA sequence from clone RP11-309N23 on chromosome 1, complete
             sequence
          Length = 136515

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    ttgatgtcttttctaaaaaa 102
             ||||||||||||||||||||
Sbjct: 39921 ttgatgtcttttctaaaaaa 39940
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>emb|AL358453.8| Human DNA sequence from clone RP11-115M14 on chromosome 1 Contains a
             cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1)
             pseudogene, complete sequence
          Length = 108934

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 283   aaacatatatccatatgcatcaga 306
             |||||||| |||||||||||||||
Sbjct: 10564 aaacatatttccatatgcatcaga 10541
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>gb|AY321333.1| Rattus norvegicus Ac2-120 mRNA, complete cds
          Length = 6315

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 466  aagaaaagacagtttttcatcagg 489
            |||||||||||||| |||||||||
Sbjct: 3028 aagaaaagacagttgttcatcagg 3051
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>emb|CR932962.2| Medicago truncatula chromosome 5 clone mte1-70c24, COMPLETE SEQUENCE
          Length = 128704

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   tgaaaatttgtaaatcaact 372
             ||||||||||||||||||||
Sbjct: 26079 tgaaaatttgtaaatcaact 26098
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>gb|AC009757.8| Homo sapiens chromosome 5, clone RP11-37M16, complete sequence
          Length = 166918

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    ccatatgcatcagacaaact 312
              ||||||||||||||||||||
Sbjct: 138798 ccatatgcatcagacaaact 138817
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>gb|AC008825.6| Homo sapiens chromosome 5 clone CTD-2134P3, complete sequence
          Length = 155495

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   ccatatgcatcagacaaact 312
             ||||||||||||||||||||
Sbjct: 72632 ccatatgcatcagacaaact 72651
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>gb|AC073160.8| Homo sapiens chromosome 10 clone RP11-348G8, complete sequence
          Length = 189817

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 266   tttaaaagaagttttgtaaacata 289
             |||||||||| |||||||||||||
Sbjct: 21197 tttaaaagaatttttgtaaacata 21174
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>gb|AC093671.3| Homo sapiens BAC clone RP11-542P2 from 4, complete sequence
          Length = 186370

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    ttaaactgaaaatttgtaaa 366
              ||||||||||||||||||||
Sbjct: 168819 ttaaactgaaaatttgtaaa 168838
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>gb|AY997971.1| Linanthus maculatus voucher Johnson 97-002 BRY tRNA-Leu (trnL)
           gene, partial sequence; trnL-trnF intergeneric spacer,
           complete sequence; and tRNA-Phe (trnF) gene, partial
           sequence; chloroplast
          Length = 990

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 aaacatatatccatatgcat 302
           ||||||||||||||||||||
Sbjct: 258 aaacatatatccatatgcat 277
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>gb|AY997970.1| Linanthus filiformis voucher Johnson 93-015 WS tRNA-Leu (trnL)
           gene, partial sequence; trnL-trnF intergeneric spacer,
           complete sequence; and tRNA-Phe (trnF) gene, partial
           sequence; chloroplast
          Length = 962

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 aaacatatatccatatgcat 302
           ||||||||||||||||||||
Sbjct: 252 aaacatatatccatatgcat 271
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    tgcaactgtagcctgcatat 147
              ||||||||||||||||||||
Sbjct: 996676 tgcaactgtagcctgcatat 996657
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>gb|AF208174.1| Gilia filiformis tRNA-Leu (trnL) and tRNA-Phe (trnF) genes, partial
           sequence; chloroplast genes for chloroplast products
          Length = 963

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 aaacatatatccatatgcat 302
           ||||||||||||||||||||
Sbjct: 252 aaacatatatccatatgcat 271
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>gb|AC019183.3|AC019183 Homo sapiens BAC clone RP11-291G24 from 18, complete sequence
          Length = 183082

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    taaatcaaacaagaccaaaa 182
              ||||||||||||||||||||
Sbjct: 118935 taaatcaaacaagaccaaaa 118916
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>gb|AC069070.19| Homo sapiens 3 BAC RP11-575H20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 154828

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   taaaagaaaagacagttttt 482
             ||||||||||||||||||||
Sbjct: 61917 taaaagaaaagacagttttt 61898
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>ref|XM_222831.3| PREDICTED: Rattus norvegicus coagulation factor 5 (F5), mRNA
          Length = 6315

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 466  aagaaaagacagtttttcatcagg 489
            |||||||||||||| |||||||||
Sbjct: 3028 aagaaaagacagttgttcatcagg 3051
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>dbj|AP003810.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1119_A04
          Length = 128906

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    tgcaactgtagcctgcatat 147
              ||||||||||||||||||||
Sbjct: 101023 tgcaactgtagcctgcatat 101004
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 91      ttttctaaaaaagagagcct 110
               ||||||||||||||||||||
Sbjct: 1867143 ttttctaaaaaagagagcct 1867162
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>emb|BX537327.7| Mouse DNA sequence from clone RP23-463N9 on chromosome 4, complete
            sequence
          Length = 103859

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 461  cataaaagaaaagacagttt 480
            ||||||||||||||||||||
Sbjct: 4585 cataaaagaaaagacagttt 4604
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>emb|AL935138.7| Mouse DNA sequence from clone RP23-222H15 on chromosome 2, complete
              sequence
          Length = 139189

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    aaactaaggaaaactgtctc 327
              ||||||||||||||||||||
Sbjct: 100954 aaactaaggaaaactgtctc 100935
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>emb|AL590762.1|HSXDPA Homo sapiens chromosome X  sequence from 6 PACs 1 BAC and 1 cosmid,
             region GJB1-DXS559 map Xq13.1; segment 1/2, complete
             sequence
          Length = 305000

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   gacagtttttcatcaggtgg 492
             ||||||||||||||||||||
Sbjct: 78727 gacagtttttcatcaggtgg 78746
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>gb|AC131182.3| Homo sapiens BAC clone RP11-392B6 from 4, complete sequence
          Length = 101396

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 144   atatatatatcagaacggataaat 167
             ||||||||||||||| ||||||||
Sbjct: 87893 atatatatatcagaagggataaat 87916


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,977,570
Number of Sequences: 3902068
Number of extensions: 7977570
Number of successful extensions: 131339
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131084
Number of HSP's gapped (non-prelim): 255
length of query: 666
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 643
effective length of database: 17,143,297,704
effective search space: 11023140423672
effective search space used: 11023140423672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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