ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18h19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472398.1| Oryza sativa (japonica cultivar-group), predic... 266 9e-68
2dbj|AK102032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 9e-68
3emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4,... 256 9e-65
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 256 9e-65
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
6dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
7dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
8dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
9dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
10dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
11gb|AY389765.1| Hyacinthus orientalis hydrolase mRNA, partial cds 62 3e-06
12gb|BC025105.1| Mus musculus V-set and immunoglobulin domain cont... 42 2.5
13gb|BC059289.1| Xenopus laevis hypothetical protein LOC398739, mR... 42 2.5
14gb|AC093656.4| Homo sapiens BAC clone RP11-440N4 from 4, complet... 42 2.5
15gb|AC097519.2| Homo sapiens BAC clone RP11-549K7 from 4, complet... 42 2.5
16dbj|AK041014.1| Mus musculus adult male aorta and vein cDNA, RIK... 42 2.5
17gb|AE005110.1| Halobacterium sp. NRC-1 section 141 of 170 of the... 42 2.5
18emb|AL831708.9| Mouse DNA sequence from clone RP23-23B17 on chro... 42 2.5
19ref|NM_177789.2| Mus musculus V-set and immunoglobulin domain co... 42 2.5
20gb|AC140197.4| Mus musculus BAC clone RP23-253A22 from chromosom... 40 9.9
21ref|XM_532319.2| PREDICTED: Canis familiaris similar to collagen... 40 9.9
22ref|XM_809463.1| Trypanosoma cruzi strain CL Brener mucin-associ... 40 9.9
23gb|AC010059.6| Drosophila melanogaster 3L BAC RP98-17A14 (Roswel... 40 9.9
24gb|AC104507.5| Drosophila melanogaster 3L BAC RP98-26J11 (Roswel... 40 9.9
25gb|AC154505.3| Mus musculus BAC clone RP24-92J14 from chromosome... 40 9.9
26gb|AC092242.1|AC092242 Drosophila melanogaster, chromosome 2L, r... 40 9.9
27gb|AC092232.1|AC092232 Drosophila melanogaster, chromosome 2L, r... 40 9.9
28dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
29gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome... 40 9.9
30gb|AC110605.5| Homo sapiens chromosome 17, clone CTD-2317L23, co... 40 9.9
31dbj|AP005594.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
32dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
33gb|AC149599.3| Mus musculus BAC clone RP23-193A3 from 18, comple... 40 9.9
34gb|AE003576.5| Drosophila melanogaster chromosome 2L, section 15... 40 9.9
35gb|AE003522.3| Drosophila melanogaster chromosome 3L, section 63... 40 9.9
36gb|AC005691.1|AC005691 Homo sapiens chromosome 17, clone hRPK.2... 40 9.9
37gb|AC005270.1|AC005270 Drosophila melanogaster DNA sequence (P1s... 40 9.9
38emb|CT010583.8| Mouse DNA sequence from clone RP23-203B24 on chr... 40 9.9
39gb|M11910.1|PPDCG Deer papillomavirus (DPV), complete genome 40 9.9 
>ref|XM_472398.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1035

 Score =  266 bits (134), Expect = 9e-68
 Identities = 254/294 (86%)
 Strand = Plus / Minus

                                                                        
Query: 366  cagcagggacttgacgatggcgtcggccatctcctgtgcaatggggaagaggtgcccgga 425
            |||||| |||||||||||||  ||||||||| | |  || |  ||||| | ||| |||||
Sbjct: 1008 cagcagcgacttgacgatggtatcggccatcccgtcggcgagcgggaacatgtggccgga 949

                                                                        
Query: 426  ctttgggagctcgtggtagaccacccacgggagcctctcgctgatgtacctggacaagat 485
            ||| ||||||||||||||||| ||||| || ||| ||||||| | ||||||||||| | |
Sbjct: 948  cttggggagctcgtggtagacgacccagggcagcttctcgcttaggtacctggacaggct 889

                                                                        
Query: 486  gaccggcacgatgcgatcctccgcgccgtgccacaggtgcaccttgccttggccgccggc 545
            ||||||||||||  | ||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct: 888  gaccggcacgatcaggtcctcggcgccgtgccacaggtgcaccttccctttgccgccggc 829

                                                                        
Query: 546  gaacgggtccttgaggtccagggggctccaaccccacttcccgaacccgaccatcatgtc 605
            ||||||||||| ||| ||||| |||||||| | |||||||||||| |||||| |||||||
Sbjct: 828  gaacgggtcctcgagctccagcgggctccagctccacttcccgaatccgaccgtcatgtc 769

                                                                  
Query: 606  gcggtgcaggcagtagtgctccccctgctgccttatcatcggcatgtaggttcg 659
            |||||||||||||  || |||||||||||||||||||  |||||||||||||||
Sbjct: 768  gcggtgcaggcagctgtactccccctgctgccttatctgcggcatgtaggttcg 715



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 687 gtcttcctgggagaggagtgcagggttgtaggcgatga 724
           ||||||||  |||||||| || ||||||||||||||||
Sbjct: 687 gtcttcctcagagaggagggccgggttgtaggcgatga 650
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>dbj|AK102032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081A11, full
            insert sequence
          Length = 1293

 Score =  266 bits (134), Expect = 9e-68
 Identities = 254/294 (86%)
 Strand = Plus / Minus

                                                                        
Query: 366  cagcagggacttgacgatggcgtcggccatctcctgtgcaatggggaagaggtgcccgga 425
            |||||| |||||||||||||  ||||||||| | |  || |  ||||| | ||| |||||
Sbjct: 1049 cagcagcgacttgacgatggtatcggccatcccgtcggcgagcgggaacatgtggccgga 990

                                                                        
Query: 426  ctttgggagctcgtggtagaccacccacgggagcctctcgctgatgtacctggacaagat 485
            ||| ||||||||||||||||| ||||| || ||| ||||||| | ||||||||||| | |
Sbjct: 989  cttggggagctcgtggtagacgacccagggcagcttctcgcttaggtacctggacaggct 930

                                                                        
Query: 486  gaccggcacgatgcgatcctccgcgccgtgccacaggtgcaccttgccttggccgccggc 545
            ||||||||||||  | ||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct: 929  gaccggcacgatcaggtcctcggcgccgtgccacaggtgcaccttccctttgccgccggc 870

                                                                        
Query: 546  gaacgggtccttgaggtccagggggctccaaccccacttcccgaacccgaccatcatgtc 605
            ||||||||||| ||| ||||| |||||||| | |||||||||||| |||||| |||||||
Sbjct: 869  gaacgggtcctcgagctccagcgggctccagctccacttcccgaatccgaccgtcatgtc 810

                                                                  
Query: 606  gcggtgcaggcagtagtgctccccctgctgccttatcatcggcatgtaggttcg 659
            |||||||||||||  || |||||||||||||||||||  |||||||||||||||
Sbjct: 809  gcggtgcaggcagctgtactccccctgctgccttatctgcggcatgtaggttcg 756



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 687 gtcttcctgggagaggagtgcagggttgtaggcgatga 724
           ||||||||  |||||||| || ||||||||||||||||
Sbjct: 728 gtcttcctcagagaggagggccgggttgtaggcgatga 691
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>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04,
             complete sequence
          Length = 143301

 Score =  256 bits (129), Expect = 9e-65
 Identities = 240/277 (86%)
 Strand = Plus / Minus

                                                                         
Query: 366   cagcagggacttgacgatggcgtcggccatctcctgtgcaatggggaagaggtgcccgga 425
             |||||| ||||||||||||| |||||||||| | |  || |  ||||| | ||| |||||
Sbjct: 92746 cagcagcgacttgacgatggtgtcggccatcccgtcggcgagagggaacatgtggccgga 92687

                                                                         
Query: 426   ctttgggagctcgtggtagaccacccacgggagcctctcgctgatgtacctggacaagat 485
             ||| ||||||||||||||||| ||||| |||||  ||||||||| ||||||||||| | |
Sbjct: 92686 cttggggagctcgtggtagacgacccaggggagtttctcgctgaggtacctggacaggct 92627

                                                                         
Query: 486   gaccggcacgatgcgatcctccgcgccgtgccacaggtgcaccttgccttggccgccggc 545
             ||||||||||||  ||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct: 92626 gaccggcacgatcagatcctcggcgccgtgccacaggtgcaccttcccttcgccgccggc 92567

                                                                         
Query: 546   gaacgggtccttgaggtccagggggctccaaccccacttcccgaacccgaccatcatgtc 605
             ||||||||||| ||| ||||| |||||||| | |||||||||||| |||||  |||||||
Sbjct: 92566 gaacgggtcctcgagctccagtgggctccagctccacttcccgaatccgactgtcatgtc 92507

                                                  
Query: 606   gcggtgcaggcagtagtgctccccctgctgccttatc 642
             |||||||||||||   | |||||||||||||||||||
Sbjct: 92506 gcggtgcaggcagccatactccccctgctgccttatc 92470



 Score =  248 bits (125), Expect = 2e-62
 Identities = 239/277 (86%)
 Strand = Plus / Minus

                                                                         
Query: 366   cagcagggacttgacgatggcgtcggccatctcctgtgcaatggggaagaggtgcccgga 425
             |||||| |||||||||||||  ||||||||| | |  || |  ||||| | ||| |||||
Sbjct: 84332 cagcagcgacttgacgatggtatcggccatcccgtcggcgagcgggaacatgtggccgga 84273

                                                                         
Query: 426   ctttgggagctcgtggtagaccacccacgggagcctctcgctgatgtacctggacaagat 485
             ||| ||||||||||||||||| ||||| || ||| ||||||| | ||||||||||| | |
Sbjct: 84272 cttggggagctcgtggtagacgacccagggcagcttctcgcttaggtacctggacaggct 84213

                                                                         
Query: 486   gaccggcacgatgcgatcctccgcgccgtgccacaggtgcaccttgccttggccgccggc 545
             ||||||||||||  | ||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct: 84212 gaccggcacgatcaggtcctcggcgccgtgccacaggtgcaccttccctttgccgccggc 84153

                                                                         
Query: 546   gaacgggtccttgaggtccagggggctccaaccccacttcccgaacccgaccatcatgtc 605
             ||||||||||| ||| ||||| |||||||| | |||||||||||| |||||| |||||||
Sbjct: 84152 gaacgggtcctcgagctccagcgggctccagctccacttcccgaatccgaccgtcatgtc 84093

                                                  
Query: 606   gcggtgcaggcagtagtgctccccctgctgccttatc 642
             |||||||||||||  || |||||||||||||||||||
Sbjct: 84092 gcggtgcaggcagctgtactccccctgctgccttatc 84056



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 687   gtcttcctgggagaggagtgcagggttgtaggcgatga 724
             ||||||||  |||||||| || ||||||||||||||||
Sbjct: 83902 gtcttcctcagagaggagggccgggttgtaggcgatga 83865
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  256 bits (129), Expect = 9e-65
 Identities = 240/277 (86%)
 Strand = Plus / Minus

                                                                            
Query: 366      cagcagggacttgacgatggcgtcggccatctcctgtgcaatggggaagaggtgcccgga 425
                |||||| ||||||||||||| |||||||||| | |  || |  ||||| | ||| |||||
Sbjct: 20362113 cagcagcgacttgacgatggtgtcggccatcccgtcggcgagagggaacatgtggccgga 20362054

                                                                            
Query: 426      ctttgggagctcgtggtagaccacccacgggagcctctcgctgatgtacctggacaagat 485
                ||| ||||||||||||||||| ||||| |||||  ||||||||| ||||||||||| | |
Sbjct: 20362053 cttggggagctcgtggtagacgacccaggggagtttctcgctgaggtacctggacaggct 20361994

                                                                            
Query: 486      gaccggcacgatgcgatcctccgcgccgtgccacaggtgcaccttgccttggccgccggc 545
                ||||||||||||  ||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct: 20361993 gaccggcacgatcagatcctcggcgccgtgccacaggtgcaccttcccttcgccgccggc 20361934

                                                                            
Query: 546      gaacgggtccttgaggtccagggggctccaaccccacttcccgaacccgaccatcatgtc 605
                ||||||||||| ||| ||||| |||||||| | |||||||||||| |||||  |||||||
Sbjct: 20361933 gaacgggtcctcgagctccagtgggctccagctccacttcccgaatccgactgtcatgtc 20361874

                                                     
Query: 606      gcggtgcaggcagtagtgctccccctgctgccttatc 642
                |||||||||||||   | |||||||||||||||||||
Sbjct: 20361873 gcggtgcaggcagccatactccccctgctgccttatc 20361837



 Score =  248 bits (125), Expect = 2e-62
 Identities = 239/277 (86%)
 Strand = Plus / Minus

                                                                            
Query: 366      cagcagggacttgacgatggcgtcggccatctcctgtgcaatggggaagaggtgcccgga 425
                |||||| |||||||||||||  ||||||||| | |  || |  ||||| | ||| |||||
Sbjct: 20353699 cagcagcgacttgacgatggtatcggccatcccgtcggcgagcgggaacatgtggccgga 20353640

                                                                            
Query: 426      ctttgggagctcgtggtagaccacccacgggagcctctcgctgatgtacctggacaagat 485
                ||| ||||||||||||||||| ||||| || ||| ||||||| | ||||||||||| | |
Sbjct: 20353639 cttggggagctcgtggtagacgacccagggcagcttctcgcttaggtacctggacaggct 20353580

                                                                            
Query: 486      gaccggcacgatgcgatcctccgcgccgtgccacaggtgcaccttgccttggccgccggc 545
                ||||||||||||  | ||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct: 20353579 gaccggcacgatcaggtcctcggcgccgtgccacaggtgcaccttccctttgccgccggc 20353520

                                                                            
Query: 546      gaacgggtccttgaggtccagggggctccaaccccacttcccgaacccgaccatcatgtc 605
                ||||||||||| ||| ||||| |||||||| | |||||||||||| |||||| |||||||
Sbjct: 20353519 gaacgggtcctcgagctccagcgggctccagctccacttcccgaatccgaccgtcatgtc 20353460

                                                     
Query: 606      gcggtgcaggcagtagtgctccccctgctgccttatc 642
                |||||||||||||  || |||||||||||||||||||
Sbjct: 20353459 gcggtgcaggcagctgtactccccctgctgccttatc 20353423



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 687      gtcttcctgggagaggagtgcagggttgtaggcgatga 724
                ||||||||  |||||||| || ||||||||||||||||
Sbjct: 20353269 gtcttcctcagagaggagggccgggttgtaggcgatga 20353232
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  115 bits (58), Expect = 2e-22
 Identities = 129/150 (86%), Gaps = 2/150 (1%)
 Strand = Plus / Minus

                                                                            
Query: 490      ggcacgatgcgatcctccgcgccgtgccacaggtgcacctt-gccttggccgccggcgaa 548
                ||||||||| | |||||||||||||||||||||||||||   |||| | ||||||| |||
Sbjct: 19614589 ggcacgatgaggtcctccgcgccgtgccacaggtgcaccgccgcctcgcccgccgg-gaa 19614531

                                                                            
Query: 549      cgggtccttgaggtccagggggctccaaccccacttcccgaacccgaccatcatgtcgcg 608
                ||||| ||  |  ||||| |||||||| ||||||||||||||||| |||| |||||| ||
Sbjct: 19614530 cgggttctccatctccagcgggctccacccccacttcccgaaccccaccagcatgtcccg 19614471

                                              
Query: 609      gtgcaggcagtagtgctccccctgctgcct 638
                ||||||||  | ||||||||||||||||||
Sbjct: 19614470 gtgcaggctctcgtgctccccctgctgcct 19614441



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 660      cattccaaacttcttcatgagctt 683
                |||| |||||||||||||||||||
Sbjct: 12513822 catttcaaacttcttcatgagctt 12513845
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>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0605D08
          Length = 144340

 Score =  115 bits (58), Expect = 2e-22
 Identities = 129/150 (86%), Gaps = 2/150 (1%)
 Strand = Plus / Minus

                                                                         
Query: 490   ggcacgatgcgatcctccgcgccgtgccacaggtgcacctt-gccttggccgccggcgaa 548
             ||||||||| | |||||||||||||||||||||||||||   |||| | ||||||| |||
Sbjct: 80875 ggcacgatgaggtcctccgcgccgtgccacaggtgcaccgccgcctcgcccgccgg-gaa 80817

                                                                         
Query: 549   cgggtccttgaggtccagggggctccaaccccacttcccgaacccgaccatcatgtcgcg 608
             ||||| ||  |  ||||| |||||||| ||||||||||||||||| |||| |||||| ||
Sbjct: 80816 cgggttctccatctccagcgggctccacccccacttcccgaaccccaccagcatgtcccg 80757

                                           
Query: 609   gtgcaggcagtagtgctccccctgctgcct 638
             ||||||||  | ||||||||||||||||||
Sbjct: 80756 gtgcaggctctcgtgctccccctgctgcct 80727
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>dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E04, full
            insert sequence
          Length = 1405

 Score =  115 bits (58), Expect = 2e-22
 Identities = 129/150 (86%), Gaps = 2/150 (1%)
 Strand = Plus / Minus

                                                                        
Query: 490  ggcacgatgcgatcctccgcgccgtgccacaggtgcacctt-gccttggccgccggcgaa 548
            ||||||||| | |||||||||||||||||||||||||||   |||| | ||||||| |||
Sbjct: 1094 ggcacgatgaggtcctccgcgccgtgccacaggtgcaccgccgcctcgcccgccgg-gaa 1036

                                                                        
Query: 549  cgggtccttgaggtccagggggctccaaccccacttcccgaacccgaccatcatgtcgcg 608
            ||||| ||  |  ||||| |||||||| ||||||||||||||||| |||| |||||| ||
Sbjct: 1035 cgggttctccatctccagcgggctccacccccacttcccgaaccccaccagcatgtcccg 976

                                          
Query: 609  gtgcaggcagtagtgctccccctgctgcct 638
            ||||||||  | ||||||||||||||||||
Sbjct: 975  gtgcaggctctcgtgctccccctgctgcct 946
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>dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H03, full
            insert sequence
          Length = 1399

 Score =  115 bits (58), Expect = 2e-22
 Identities = 129/150 (86%), Gaps = 2/150 (1%)
 Strand = Plus / Minus

                                                                        
Query: 490  ggcacgatgcgatcctccgcgccgtgccacaggtgcacctt-gccttggccgccggcgaa 548
            ||||||||| | |||||||||||||||||||||||||||   |||| | ||||||| |||
Sbjct: 1094 ggcacgatgaggtcctccgcgccgtgccacaggtgcaccgccgcctcgcccgccgg-gaa 1036

                                                                        
Query: 549  cgggtccttgaggtccagggggctccaaccccacttcccgaacccgaccatcatgtcgcg 608
            ||||| ||  |  ||||| |||||||| ||||||||||||||||| |||| |||||| ||
Sbjct: 1035 cgggttctccatctccagcgggctccacccccacttcccgaaccccaccagcatgtcccg 976

                                          
Query: 609  gtgcaggcagtagtgctccccctgctgcct 638
            ||||||||  | ||||||||||||||||||
Sbjct: 975  gtgcaggctctcgtgctccccctgctgcct 946
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>dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119A16, full
            insert sequence
          Length = 1391

 Score =  115 bits (58), Expect = 2e-22
 Identities = 129/150 (86%), Gaps = 2/150 (1%)
 Strand = Plus / Minus

                                                                        
Query: 490  ggcacgatgcgatcctccgcgccgtgccacaggtgcacctt-gccttggccgccggcgaa 548
            ||||||||| | |||||||||||||||||||||||||||   |||| | ||||||| |||
Sbjct: 1095 ggcacgatgaggtcctccgcgccgtgccacaggtgcaccgccgcctcgcccgccgg-gaa 1037

                                                                        
Query: 549  cgggtccttgaggtccagggggctccaaccccacttcccgaacccgaccatcatgtcgcg 608
            ||||| ||  |  ||||| |||||||| ||||||||||||||||| |||| |||||| ||
Sbjct: 1036 cgggttctccatctccagcgggctccacccccacttcccgaaccccaccagcatgtcccg 977

                                          
Query: 609  gtgcaggcagtagtgctccccctgctgcct 638
            ||||||||  | ||||||||||||||||||
Sbjct: 976  gtgcaggctctcgtgctccccctgctgcct 947
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>dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D10, full
            insert sequence
          Length = 1409

 Score =  115 bits (58), Expect = 2e-22
 Identities = 129/150 (86%), Gaps = 2/150 (1%)
 Strand = Plus / Minus

                                                                        
Query: 490  ggcacgatgcgatcctccgcgccgtgccacaggtgcacctt-gccttggccgccggcgaa 548
            ||||||||| | |||||||||||||||||||||||||||   |||| | ||||||| |||
Sbjct: 1094 ggcacgatgaggtcctccgcgccgtgccacaggtgcaccgccgcctcgcccgccgg-gaa 1036

                                                                        
Query: 549  cgggtccttgaggtccagggggctccaaccccacttcccgaacccgaccatcatgtcgcg 608
            ||||| ||  |  ||||| |||||||| ||||||||||||||||| |||| |||||| ||
Sbjct: 1035 cgggttctccatctccagcgggctccacccccacttcccgaaccccaccagcatgtcccg 976

                                          
Query: 609  gtgcaggcagtagtgctccccctgctgcct 638
            ||||||||  | ||||||||||||||||||
Sbjct: 975  gtgcaggctctcgtgctccccctgctgcct 946
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>gb|AY389765.1| Hyacinthus orientalis hydrolase mRNA, partial cds
          Length = 796

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                       
Query: 454 gggagcctctcgctgatgtacctggacaagatgaccggcacgatgcgatcctccgcgccg 513
           |||||||||  ||||||||| |  |||| |||||||||||| || || || || ||||||
Sbjct: 373 gggagcctccggctgatgtatcgcgacatgatgaccggcactatccggtcttcggcgccg 314

                          
Query: 514 tgccacaggtgcacc 528
           |||||||||||||||
Sbjct: 313 tgccacaggtgcacc 299
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>gb|BC025105.1| Mus musculus V-set and immunoglobulin domain containing 4, mRNA
           (cDNA clone MGC:36211 IMAGE:4162875), complete cds
          Length = 1423

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 698 agaggagtgcagggttgtagg 718
           |||||||||||||||||||||
Sbjct: 508 agaggagtgcagggttgtagg 488
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>gb|BC059289.1| Xenopus laevis hypothetical protein LOC398739, mRNA (cDNA clone
            IMAGE:4679818), partial cds
          Length = 3830

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 550  gggtccttgaggtccaggggg 570
            |||||||||||||||||||||
Sbjct: 3185 gggtccttgaggtccaggggg 3165
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>gb|AC093656.4| Homo sapiens BAC clone RP11-440N4 from 4, complete sequence
          Length = 152326

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    tggctccaaaacctcctgtgg 56
             |||||||||||||||||||||
Sbjct: 94869 tggctccaaaacctcctgtgg 94849
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>gb|AC097519.2| Homo sapiens BAC clone RP11-549K7 from 4, complete sequence
          Length = 185556

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 36     tggctccaaaacctcctgtgg 56
              |||||||||||||||||||||
Sbjct: 161161 tggctccaaaacctcctgtgg 161141
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>dbj|AK041014.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530061A11 product:hypothetical
           Immunoglobulin and major histocompatibility complex
           domain/Immunoglobulin subtype containing protein, full
           insert sequence
          Length = 1433

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 698 agaggagtgcagggttgtagg 718
           |||||||||||||||||||||
Sbjct: 533 agaggagtgcagggttgtagg 513
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>gb|AE005110.1| Halobacterium sp. NRC-1 section 141 of 170 of the complete genome
          Length = 11525

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 378  gacgatggcgtcggccatctc 398
            |||||||||||||||||||||
Sbjct: 4307 gacgatggcgtcggccatctc 4327
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>emb|AL831708.9| Mouse DNA sequence from clone RP23-23B17 on chromosome X, complete
             sequence
          Length = 113082

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 698   agaggagtgcagggttgtagg 718
             |||||||||||||||||||||
Sbjct: 74045 agaggagtgcagggttgtagg 74065
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>ref|NM_177789.2| Mus musculus V-set and immunoglobulin domain containing 4 (Vsig4),
           mRNA
          Length = 1433

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 698 agaggagtgcagggttgtagg 718
           |||||||||||||||||||||
Sbjct: 533 agaggagtgcagggttgtagg 513
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>gb|AC140197.4| Mus musculus BAC clone RP23-253A22 from chromosome 18, complete sequence
          Length = 192563

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 183    tgctcccaatgggagacactgttt 206
              |||| |||||||||||||||||||
Sbjct: 176847 tgctgccaatgggagacactgttt 176870
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>ref|XM_532319.2| PREDICTED: Canis familiaris similar to collagen, type XIV, alpha 1
            (LOC475085), mRNA
          Length = 5391

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 551  ggtccttgaggtccaggggg 570
            ||||||||||||||||||||
Sbjct: 4523 ggtccttgaggtccaggggg 4504
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>ref|XM_809463.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein
           (MASP) (Tc00.1047053506339.40) partial mRNA
          Length = 1269

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 666 aaacttcttcatgagcttcg 685
           ||||||||||||||||||||
Sbjct: 244 aaacttcttcatgagcttcg 225
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>gb|AC010059.6| Drosophila melanogaster 3L BAC RP98-17A14 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 171678

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 666   aaacttcttcatgagcttcg 685
             ||||||||||||||||||||
Sbjct: 62424 aaacttcttcatgagcttcg 62405
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>gb|AC104507.5| Drosophila melanogaster 3L BAC RP98-26J11 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 183911

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 666   aaacttcttcatgagcttcg 685
             ||||||||||||||||||||
Sbjct: 43884 aaacttcttcatgagcttcg 43903
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>gb|AC154505.3| Mus musculus BAC clone RP24-92J14 from chromosome 13, complete sequence
          Length = 199707

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   acaatacatgctcccaatgg 194
             ||||||||||||||||||||
Sbjct: 57978 acaatacatgctcccaatgg 57959
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>gb|AC092242.1|AC092242 Drosophila melanogaster, chromosome 2L, region 24E-24F, BAC clone
              BACR09F08, complete sequence
          Length = 111023

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 624    ctccccctgctgccttatca 643
              ||||||||||||||||||||
Sbjct: 109022 ctccccctgctgccttatca 109003
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>gb|AC092232.1|AC092232 Drosophila melanogaster, chromosome 2L, region 24E-24F, BAC clone
              BACR28K16, complete sequence
          Length = 182897

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 624    ctccccctgctgccttatca 643
              ||||||||||||||||||||
Sbjct: 167423 ctccccctgctgccttatca 167442
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     atacaatacatgctcccaat 192
               ||||||||||||||||||||
Sbjct: 5805229 atacaatacatgctcccaat 5805248
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>gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome 16, complete sequence
          Length = 178222

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 693    ctgggagaggagtgcagggttgta 716
              |||||| |||||||||||||||||
Sbjct: 175686 ctgggacaggagtgcagggttgta 175709
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>gb|AC110605.5| Homo sapiens chromosome 17, clone CTD-2317L23, complete sequence
          Length = 60418

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 568   gggctccaaccccacttccc 587
             ||||||||||||||||||||
Sbjct: 45329 gggctccaaccccacttccc 45348
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>dbj|AP005594.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0701E06
          Length = 123415

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    atacaatacatgctcccaat 192
              ||||||||||||||||||||
Sbjct: 101434 atacaatacatgctcccaat 101453
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>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0572D06
          Length = 148920

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 660   cattccaaacttcttcatgagctt 683
             |||| |||||||||||||||||||
Sbjct: 18355 catttcaaacttcttcatgagctt 18378
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>gb|AC149599.3| Mus musculus BAC clone RP23-193A3 from 18, complete sequence
          Length = 208349

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 183    tgctcccaatgggagacactgttt 206
              |||| |||||||||||||||||||
Sbjct: 113072 tgctgccaatgggagacactgttt 113095
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>gb|AE003576.5| Drosophila melanogaster chromosome 2L, section 15 of 83 of the complete
             sequence
          Length = 289893

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 624   ctccccctgctgccttatca 643
             ||||||||||||||||||||
Sbjct: 40244 ctccccctgctgccttatca 40225
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>gb|AE003522.3| Drosophila melanogaster chromosome 3L, section 63 of 83 of the complete
              sequence
          Length = 302050

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 666    aaacttcttcatgagcttcg 685
              ||||||||||||||||||||
Sbjct: 260311 aaacttcttcatgagcttcg 260330
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>gb|AC005691.1|AC005691 Homo sapiens chromosome 17, clone  hRPK.28_A_22, complete sequence
          Length = 156821

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 568  gggctccaaccccacttccc 587
            ||||||||||||||||||||
Sbjct: 5955 gggctccaaccccacttccc 5974
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>gb|AC005270.1|AC005270 Drosophila melanogaster DNA sequence (P1s DS00830 (D77) and DS04830
              (D98)), complete sequence
          Length = 132666

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 624    ctccccctgctgccttatca 643
              ||||||||||||||||||||
Sbjct: 103611 ctccccctgctgccttatca 103592
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>emb|CT010583.8| Mouse DNA sequence from clone RP23-203B24 on chromosome 16, complete
             sequence
          Length = 234878

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 693   ctgggagaggagtgcagggttgta 716
             |||||| |||||||||||||||||
Sbjct: 22703 ctgggacaggagtgcagggttgta 22726
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>gb|M11910.1|PPDCG Deer papillomavirus (DPV), complete genome
          Length = 8374

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 92   gtctgcctcattcacggcccccgg 115
            ||||||||| ||||||||||||||
Sbjct: 3240 gtctgcctctttcacggcccccgg 3217


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,831,863
Number of Sequences: 3902068
Number of extensions: 4831863
Number of successful extensions: 85975
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85808
Number of HSP's gapped (non-prelim): 167
length of query: 724
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 701
effective length of database: 17,143,297,704
effective search space: 12017451690504
effective search space used: 12017451690504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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