ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18h11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009268.1| Triticum aestivum clone wlk8.pk0002.f4:fis, full insert mRNA sequence Length = 1919 Score = 527 bits (266), Expect = e-147 Identities = 364/398 (91%), Gaps = 3/398 (0%) Strand = Plus / Minus Query: 44 ttatacangccatgaaacgtccatttatcatgtgatntattcttctcagtctcatactgn 103 ||||||| |||||||||||||| |||||||||| | |||||||||||||||||||||| Sbjct: 1828 ttatacaagccatgaaacgtccttttatcatgtaacttattcttctcagtctcatactgc 1769 Query: 104 tgctgtacacatggtcacatggacttnct-agatgaccatcgtatggtatttcagataat 162 ||||||||| ||||||||||||||| || |||| ||||||||||||||||||||||||| Sbjct: 1768 tgctgtaca--tggtcacatggacttccttagataaccatcgtatggtatttcagataat 1711 Query: 163 tatcggntgatatttcacatacttgttgaaccaagaacttagccaactgatccctccagc 222 |||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||||| Sbjct: 1710 tatcgggtgatatttcgcagacttgttgaaccaataacttagccaactgatccctccagc 1651 Query: 223 ttcaggttcataagtgcatccacctnctgggcaaactcgtnaggaaggtgtncaaagacg 282 ||||||||||| ||||||||||||| |||||||||||||| |||||||||| |||||||| Sbjct: 1650 ttcaggttcattagtgcatccacctcctgggcaaactcgtaaggaaggtgttcaaagacg 1591 Query: 283 gccctacagaatccaccgatcatggctgcaacggncttttcatgatctatccccctttgc 342 || |||||||| ||||| |||||||||||||||| |||||||||||| ||||| |||||| Sbjct: 1590 gctctacagaacccacctatcatggctgcaacggccttttcatgatcaatccctctttgc 1531 Query: 343 tgaaagtaaaacagctggtcctctncaattttggatgtgcttgcttnatgctcaacacgg 402 |||||||| || ||||| ||||| ||||||||||||||||||| | ||||||||||||| Sbjct: 1530 tgaaagtagaatagctgatcctcgccaattttggatgtgcttgcctcatgctcaacacgg 1471 Query: 403 ccactagtacaacccacctgaatggtgggataggtgtt 440 |||||||| ||||||||||||||||| ||||||||||| Sbjct: 1470 ccactagtgcaacccacctgaatggtcggataggtgtt 1433 Score = 46.1 bits (23), Expect = 0.097 Identities = 28/30 (93%) Strand = Plus / Minus Query: 1 gaagcgccacggttctcttcgntgtcgtgg 30 |||||||| |||||||||||| |||||||| Sbjct: 1862 gaagcgccgcggttctcttcgctgtcgtgg 1833
>gb|AY103958.1| Zea mays PCO141591 mRNA sequence Length = 1691 Score = 202 bits (102), Expect = 7e-49 Identities = 204/240 (85%) Strand = Plus / Minus Query: 201 ttagccaactgatccctccagcttcaggttcataagtgcatccacctnctgggcaaactc 260 |||||||||||||||||| || ||||||||||| ||||| ||||||| ||| || || || Sbjct: 1389 ttagccaactgatccctcgagtttcaggttcatgagtgcgtccacctcctgtgcgaattc 1330 Query: 261 gtnaggaaggtgtncaaagacggccctacagaatccaccgatcatggctgcaacggnctt 320 | |||||||| | || || | || ||||||||||| |||||||| ||||| | ||| Sbjct: 1329 atagggaaggtgctcgaaaacagatctgcagaatccaccaatcatggcggcaactgcctt 1270 Query: 321 ttcatgatctatccccctttgctgaaagtaaaacagctggtcctctncaattttggatgt 380 ||||||||||| ||| |||||||| || ||||| ||||| |||||| |||||||||| || Sbjct: 1269 ttcatgatctacccctctttgctggaaataaaatagctgatcctctccaattttggaagt 1210 Query: 381 gcttgcttnatgctcaacacggccactagtacaacccacctgaatggtgggataggtgtt 440 |||||| | ||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 1209 gcttgcctcatgctcaacccggccactagtgcaccccacctgaatggtgggataggtgtt 1150
>ref|NM_190436.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1635 Score = 178 bits (90), Expect = 1e-41 Identities = 198/236 (83%) Strand = Plus / Minus Query: 205 ccaactgatccctccagcttcaggttcataagtgcatccacctnctgggcaaactcgtna 264 |||||||||||||| ||||||||||||||||||||||||| || || |||||||||| | Sbjct: 1631 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 1572 Query: 265 ggaaggtgtncaaagacggccctacagaatccaccgatcatggctgcaacggncttttca 324 ||||| | | || || ||||| ||||||||||| ||||| |||||||| | ||||||| Sbjct: 1571 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 1512 Query: 325 tgatctatccccctttgctgaaagtaaaacagctggtcctctncaattttggatgtgctt 384 || |||||||||||||| || || ||||| ||||||||||| | ||||| || |||||| Sbjct: 1511 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 1452 Query: 385 gcttnatgctcaacacggccactagtacaacccacctgaatggtgggataggtgtt 440 || | |||||||||||| | | | | |||||||||||||| || ||||||||||| Sbjct: 1451 gcctcatgctcaacacgactagaaatgcaacccacctgaatagtcggataggtgtt 1396
>dbj|AK121100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069G03, full insert sequence Length = 1978 Score = 178 bits (90), Expect = 1e-41 Identities = 198/236 (83%) Strand = Plus / Minus Query: 205 ccaactgatccctccagcttcaggttcataagtgcatccacctnctgggcaaactcgtna 264 |||||||||||||| ||||||||||||||||||||||||| || || |||||||||| | Sbjct: 1677 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 1618 Query: 265 ggaaggtgtncaaagacggccctacagaatccaccgatcatggctgcaacggncttttca 324 ||||| | | || || ||||| ||||||||||| ||||| |||||||| | ||||||| Sbjct: 1617 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 1558 Query: 325 tgatctatccccctttgctgaaagtaaaacagctggtcctctncaattttggatgtgctt 384 || |||||||||||||| || || ||||| ||||||||||| | ||||| || |||||| Sbjct: 1557 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 1498 Query: 385 gcttnatgctcaacacggccactagtacaacccacctgaatggtgggataggtgtt 440 || | |||||||||||| | | | | |||||||||||||| || ||||||||||| Sbjct: 1497 gcctcatgctcaacacgactagaaatgcaacccacctgaatagtcggataggtgtt 1442
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 165 bits (83), Expect = 2e-37 Identities = 167/197 (84%) Strand = Plus / Plus Query: 205 ccaactgatccctccagcttcaggttcataagtgcatccacctnctgggcaaactcgtna 264 |||||||||||||| ||||||||||||||||||||||||| || || |||||||||| | Sbjct: 35499073 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 35499132 Query: 265 ggaaggtgtncaaagacggccctacagaatccaccgatcatggctgcaacggncttttca 324 ||||| | | || || ||||| ||||||||||| ||||| |||||||| | ||||||| Sbjct: 35499133 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 35499192 Query: 325 tgatctatccccctttgctgaaagtaaaacagctggtcctctncaattttggatgtgctt 384 || |||||||||||||| || || ||||| ||||||||||| | ||||| || |||||| Sbjct: 35499193 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 35499252 Query: 385 gcttnatgctcaacacg 401 || | |||||||||||| Sbjct: 35499253 gcctcatgctcaacacg 35499269
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446G04 Length = 143515 Score = 165 bits (83), Expect = 2e-37 Identities = 167/197 (84%) Strand = Plus / Plus Query: 205 ccaactgatccctccagcttcaggttcataagtgcatccacctnctgggcaaactcgtna 264 |||||||||||||| ||||||||||||||||||||||||| || || |||||||||| | Sbjct: 29260 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 29319 Query: 265 ggaaggtgtncaaagacggccctacagaatccaccgatcatggctgcaacggncttttca 324 ||||| | | || || ||||| ||||||||||| ||||| |||||||| | ||||||| Sbjct: 29320 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 29379 Query: 325 tgatctatccccctttgctgaaagtaaaacagctggtcctctncaattttggatgtgctt 384 || |||||||||||||| || || ||||| ||||||||||| | ||||| || |||||| Sbjct: 29380 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 29439 Query: 385 gcttnatgctcaacacg 401 || | |||||||||||| Sbjct: 29440 gcctcatgctcaacacg 29456
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 165 bits (83), Expect = 2e-37 Identities = 167/197 (84%) Strand = Plus / Plus Query: 205 ccaactgatccctccagcttcaggttcataagtgcatccacctnctgggcaaactcgtna 264 |||||||||||||| ||||||||||||||||||||||||| || || |||||||||| | Sbjct: 123022 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 123081 Query: 265 ggaaggtgtncaaagacggccctacagaatccaccgatcatggctgcaacggncttttca 324 ||||| | | || || ||||| ||||||||||| ||||| |||||||| | ||||||| Sbjct: 123082 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 123141 Query: 325 tgatctatccccctttgctgaaagtaaaacagctggtcctctncaattttggatgtgctt 384 || |||||||||||||| || || ||||| ||||||||||| | ||||| || |||||| Sbjct: 123142 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 123201 Query: 385 gcttnatgctcaacacg 401 || | |||||||||||| Sbjct: 123202 gcctcatgctcaacacg 123218
>gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome 18, complete sequence Length = 195082 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 226 aggttcataagtgcatccacct 247 |||||||||||||||||||||| Sbjct: 95114 aggttcataagtgcatccacct 95093
>emb|BX537928.1|HSM806046 Homo sapiens genomic DNA; cDNA DKFZp686C2092 (from clone DKFZp686C2092) Length = 4427 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 tttcatgatctatcccccttt 340 ||||||||||||||||||||| Sbjct: 690 tttcatgatctatcccccttt 710
>gb|AC124605.4| Mus musculus BAC clone RP23-82A23 from 3, complete sequence Length = 204785 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 acgtccatttatcatgtgat 79 |||||||||||||||||||| Sbjct: 68622 acgtccatttatcatgtgat 68641
>gb|AC092421.2| Homo sapiens chromosome 3 clone RP11-476A24, complete sequence Length = 160726 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tgatatttcacatacttgtt 189 |||||||||||||||||||| Sbjct: 30149 tgatatttcacatacttgtt 30130 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,412,467 Number of Sequences: 3902068 Number of extensions: 2412467 Number of successful extensions: 38260 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38217 Number of HSP's gapped (non-prelim): 34 length of query: 443 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 421 effective length of database: 17,147,199,772 effective search space: 7218971104012 effective search space used: 7218971104012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
