ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016667.1| Zea mays clone Contig500 mRNA sequence 204 3e-49
2gb|AY107261.1| Zea mays PCO091441 mRNA sequence 204 3e-49
3ref|NM_193124.1| Oryza sativa (japonica cultivar-group), mRNA 117 5e-23
4ref|XM_506495.1| PREDICTED Oryza sativa (japonica cultivar-group... 117 5e-23
5dbj|AK065122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 5e-23
6dbj|AK060807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
8dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
9dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
10gb|AC140545.26| Medicago truncatula clone mth2-11g18, complete s... 46 0.15
11gb|AC142145.3| Mus musculus BAC clone RP24-69D13 from chromosome... 44 0.58
12emb|CR352233.9| Zebrafish DNA sequence from clone CH211-193J5 in... 44 0.58
13dbj|AK079493.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 44 0.58
14gb|AC011611.26| Homo sapiens 12 BAC RP11-290L1 (Roswell Park Can... 42 2.3
15gb|AC007851.6|AC007851 Drosophila melanogaster, chromosome 2R, r... 42 2.3
16gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34... 42 2.3
17gb|AC024757.1| Caenorhabditis elegans cosmid Y37E11AL, complete ... 40 9.1
18ref|NM_197657.1| Oryza sativa (japonica cultivar-group) putative... 40 9.1
19gb|AC154107.3| Mus musculus BAC clone RP23-67L1 from chromosome ... 40 9.1
20gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 9.1
21gb|AC147370.4| Mus musculus BAC clone RP24-243N3 from chromosome... 40 9.1
22ref|XM_572519.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 9.1
23gb|AC124450.3| Mus musculus BAC clone RP24-215C4 from chromosome... 40 9.1
24gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosom... 40 9.1
25gb|AC122430.4| Mus musculus BAC clone RP24-176F14 from chromosom... 40 9.1
26emb|AL355587.14| Human DNA sequence from clone RP11-561H23 on ch... 40 9.1
27gb|AC022884.12| Homo sapiens chromosome 18, clone RP11-449D8, co... 40 9.1
28emb|CR536602.5| Zebrafish DNA sequence from clone bGZ-160O4, com... 40 9.1
29gb|AC098655.2| Homo sapiens chromosome 1 clone RP11-293P10, comp... 40 9.1
30gb|AC099672.2| Homo sapiens chromosome 1 clone RP11-286H10, comp... 40 9.1
31dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 40 9.1
32gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 geno... 40 9.1
33gb|AC104458.2| Homo sapiens chromosome 1 clone RP5-1102E8, compl... 40 9.1
34gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 9.1
35ref|NM_060898.1| Caenorhabditis elegans C17H1.8 (C17H1.8) mRNA, ... 40 9.1
36dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
37dbj|AK130749.1| Homo sapiens cDNA FLJ27239 fis, clone SYN07821 40 9.1
38dbj|AK064698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
39gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
40emb|Z92777.1|CEC17H1 Caenorhabditis elegans Cosmid C17H1, comple... 40 9.1 
>gb|BT016667.1| Zea mays clone Contig500 mRNA sequence
          Length = 1741

 Score =  204 bits (103), Expect = 3e-49
 Identities = 202/235 (85%)
 Strand = Plus / Minus

                                                                        
Query: 306  tgaacacaaggtgatggcatgcgccgtcgcaagggtacgcacagtcggtgtacttggcgt 365
            ||||||||||||||||||| | ||| ||||||||||| |  ||||| ||||||||||| |
Sbjct: 1342 tgaacacaaggtgatggcaagtgccatcgcaagggtatgggcagtctgtgtacttggcat 1283

                                                                        
Query: 366  tgcccctctcgaagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgag 425
            | |||||||||||||||||||| ||||| || || |||||| ||||||| |||||||| |
Sbjct: 1282 tccccctctcgaagaaccagtccccgacagcgtcagcgattttcttgttaccaagacgtg 1223

                                                                        
Query: 426  gagagttgctcgagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagt 485
            | |||||| ||| |||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 1222 gcgagttgttcgcgtaccaagtatcctgtctctcgctctggcaatgagcaaaacatgagt 1163

                                                                   
Query: 486  tgataaataccccattctgccctgacgcggagaaacccttcacggcgttaagcat 540
            |||| || |  ||||| |||| ||| || ||||||||| ||||||| | ||||||
Sbjct: 1162 tgatgaacagaccattttgccttgatgcagagaaacccctcacggcatcaagcat 1108
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>gb|AY107261.1| Zea mays PCO091441 mRNA sequence
          Length = 1409

 Score =  204 bits (103), Expect = 3e-49
 Identities = 202/235 (85%)
 Strand = Plus / Minus

                                                                        
Query: 306  tgaacacaaggtgatggcatgcgccgtcgcaagggtacgcacagtcggtgtacttggcgt 365
            ||||||||||||||||||| | ||| ||||||||||| |  ||||| ||||||||||| |
Sbjct: 1036 tgaacacaaggtgatggcaagtgccatcgcaagggtatgggcagtctgtgtacttggcat 977

                                                                        
Query: 366  tgcccctctcgaagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgag 425
            | |||||||||||||||||||| ||||| || || |||||| ||||||| |||||||| |
Sbjct: 976  tccccctctcgaagaaccagtccccgacagcgtcagcgattttcttgttaccaagacgtg 917

                                                                        
Query: 426  gagagttgctcgagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagt 485
            | |||||| ||| |||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 916  gcgagttgttcgcgtaccaagtatcctgtctctcgctctggcaatgagcaaaacatgagt 857

                                                                   
Query: 486  tgataaataccccattctgccctgacgcggagaaacccttcacggcgttaagcat 540
            |||| || |  ||||| |||| ||| || ||||||||| ||||||| | ||||||
Sbjct: 856  tgatgaacagaccattttgccttgatgcagagaaacccctcacggcatcaagcat 802
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>ref|NM_193124.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1221

 Score =  117 bits (59), Expect = 5e-23
 Identities = 265/331 (80%), Gaps = 2/331 (0%)
 Strand = Plus / Minus

                                                                        
Query: 335  caagggtacgcacagtcggtgtacttggcgttgcccctctcgaagaaccagtcaccgacc 394
            |||||||| |||||||| |||||||| ||||   |||| ||||| |||||||| || || 
Sbjct: 1178 caagggtatgcacagtctgtgtacttcgcgtctgccctatcgaaaaaccagtcgcctact 1119

                                                                        
Query: 395  gcttctgcgattctcttgttgccaagacgaggagagttgctcgagtaccatgtatcctgc 454
            ||||| || ||||||||||| || ||||||||||| |  |  | ||||||||| ||||| 
Sbjct: 1118 gcttcagcaattctcttgttaccgagacgaggagaatcccctgcgtaccatgtgtcctgt 1059

                                                                        
Query: 455  ctctcgctctggcaatgggcaaaacatgagttgataaataccccattctgccctgacgcg 514
            ||||| || |||||||| || ||||| ||||||||||| |  || ||||||| ||   ||
Sbjct: 1058 ctctcactttggcaatgtgcgaaacaggagttgataaaaagaccgttctgccttgcgccg 999

                                                                        
Query: 515  gagaaacccttcacggcgttaagcatttcattcctaaagccatttagaaactgaagttga 574
            ||||||||| |||| || |  ||||||| |||||| || || | || ||| || ||||| 
Sbjct: 998  gagaaacccctcaccgcatcgagcatttgattcctgaaaccttgtaaaaattgcagttgg 939

                                                                        
Query: 575  ttgctattacaaggacgcgtaattctgcttgcatctttgccatagaccttggggatcagc 634
            |||||||||| |||| || | ||||  | | |||| | ||||||||||||| ||||||||
Sbjct: 938  ttgctattac-aggaggcatgattcatcctacatcctcgccatagaccttgcggatcagc 880

                                           
Query: 635  ccgttttgggagccaaactctcttgaagctg 665
            || ||||||| |||| ||| | |||||||||
Sbjct: 879  cc-ttttgggggccacactttgttgaagctg 850
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>ref|XM_506495.1| PREDICTED Oryza sativa (japonica cultivar-group), P0455H11.118-1 mRNA
          Length = 1744

 Score =  117 bits (59), Expect = 5e-23
 Identities = 265/331 (80%), Gaps = 2/331 (0%)
 Strand = Plus / Minus

                                                                        
Query: 335  caagggtacgcacagtcggtgtacttggcgttgcccctctcgaagaaccagtcaccgacc 394
            |||||||| |||||||| |||||||| ||||   |||| ||||| |||||||| || || 
Sbjct: 1316 caagggtatgcacagtctgtgtacttcgcgtctgccctatcgaaaaaccagtcgcctact 1257

                                                                        
Query: 395  gcttctgcgattctcttgttgccaagacgaggagagttgctcgagtaccatgtatcctgc 454
            ||||| || ||||||||||| || ||||||||||| |  |  | ||||||||| ||||| 
Sbjct: 1256 gcttcagcaattctcttgttaccgagacgaggagaatcccctgcgtaccatgtgtcctgt 1197

                                                                        
Query: 455  ctctcgctctggcaatgggcaaaacatgagttgataaataccccattctgccctgacgcg 514
            ||||| || |||||||| || ||||| ||||||||||| |  || ||||||| ||   ||
Sbjct: 1196 ctctcactttggcaatgtgcgaaacaggagttgataaaaagaccgttctgccttgcgccg 1137

                                                                        
Query: 515  gagaaacccttcacggcgttaagcatttcattcctaaagccatttagaaactgaagttga 574
            ||||||||| |||| || |  ||||||| |||||| || || | || ||| || ||||| 
Sbjct: 1136 gagaaacccctcaccgcatcgagcatttgattcctgaaaccttgtaaaaattgcagttgg 1077

                                                                        
Query: 575  ttgctattacaaggacgcgtaattctgcttgcatctttgccatagaccttggggatcagc 634
            |||||||||| |||| || | ||||  | | |||| | ||||||||||||| ||||||||
Sbjct: 1076 ttgctattac-aggaggcatgattcatcctacatcctcgccatagaccttgcggatcagc 1018

                                           
Query: 635  ccgttttgggagccaaactctcttgaagctg 665
            || ||||||| |||| ||| | |||||||||
Sbjct: 1017 cc-ttttgggggccacactttgttgaagctg 988
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>dbj|AK065122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O22, full
            insert sequence
          Length = 1744

 Score =  117 bits (59), Expect = 5e-23
 Identities = 265/331 (80%), Gaps = 2/331 (0%)
 Strand = Plus / Minus

                                                                        
Query: 335  caagggtacgcacagtcggtgtacttggcgttgcccctctcgaagaaccagtcaccgacc 394
            |||||||| |||||||| |||||||| ||||   |||| ||||| |||||||| || || 
Sbjct: 1316 caagggtatgcacagtctgtgtacttcgcgtctgccctatcgaaaaaccagtcgcctact 1257

                                                                        
Query: 395  gcttctgcgattctcttgttgccaagacgaggagagttgctcgagtaccatgtatcctgc 454
            ||||| || ||||||||||| || ||||||||||| |  |  | ||||||||| ||||| 
Sbjct: 1256 gcttcagcaattctcttgttaccgagacgaggagaatcccctgcgtaccatgtgtcctgt 1197

                                                                        
Query: 455  ctctcgctctggcaatgggcaaaacatgagttgataaataccccattctgccctgacgcg 514
            ||||| || |||||||| || ||||| ||||||||||| |  || ||||||| ||   ||
Sbjct: 1196 ctctcactttggcaatgtgcgaaacaggagttgataaaaagaccgttctgccttgcgccg 1137

                                                                        
Query: 515  gagaaacccttcacggcgttaagcatttcattcctaaagccatttagaaactgaagttga 574
            ||||||||| |||| || |  ||||||| |||||| || || | || ||| || ||||| 
Sbjct: 1136 gagaaacccctcaccgcatcgagcatttgattcctgaaaccttgtaaaaattgcagttgg 1077

                                                                        
Query: 575  ttgctattacaaggacgcgtaattctgcttgcatctttgccatagaccttggggatcagc 634
            |||||||||| |||| || | ||||  | | |||| | ||||||||||||| ||||||||
Sbjct: 1076 ttgctattac-aggaggcatgattcatcctacatcctcgccatagaccttgcggatcagc 1018

                                           
Query: 635  ccgttttgggagccaaactctcttgaagctg 665
            || ||||||| |||| ||| | |||||||||
Sbjct: 1017 cc-ttttgggggccacactttgttgaagctg 988
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>dbj|AK060807.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-G03, full
            insert sequence
          Length = 1466

 Score =  109 bits (55), Expect = 1e-20
 Identities = 264/331 (79%), Gaps = 2/331 (0%)
 Strand = Plus / Minus

                                                                        
Query: 335  caagggtacgcacagtcggtgtacttggcgttgcccctctcgaagaaccagtcaccgacc 394
            |||||||| |||||||| |||||||| ||||   |||| ||||| |||||||| || || 
Sbjct: 1053 caagggtatgcacagtctgtgtacttcgcgtctgccctatcgaaaaaccagtcgcctact 994

                                                                        
Query: 395  gcttctgcgattctcttgttgccaagacgaggagagttgctcgagtaccatgtatcctgc 454
            ||||| || ||||||||||| || ||||||||||| |  |  | ||||| ||| ||||| 
Sbjct: 993  gcttcagcaattctcttgttaccgagacgaggagaatcccctgcgtaccgtgtgtcctgt 934

                                                                        
Query: 455  ctctcgctctggcaatgggcaaaacatgagttgataaataccccattctgccctgacgcg 514
            ||||| || |||||||| || ||||| ||||||||||| |  || ||||||| ||   ||
Sbjct: 933  ctctcactttggcaatgtgcgaaacaggagttgataaaaagaccgttctgccttgcgccg 874

                                                                        
Query: 515  gagaaacccttcacggcgttaagcatttcattcctaaagccatttagaaactgaagttga 574
            ||||||||| |||| || |  ||||||| |||||| || || | || ||| || ||||| 
Sbjct: 873  gagaaacccctcaccgcatcgagcatttgattcctgaaaccttgtaaaaattgcagttgg 814

                                                                        
Query: 575  ttgctattacaaggacgcgtaattctgcttgcatctttgccatagaccttggggatcagc 634
            |||||||||| |||| || | ||||  | | |||| | ||||||||||||| ||||||||
Sbjct: 813  ttgctattac-aggaggcatgattcatcctacatcctcgccatagaccttgcggatcagc 755

                                           
Query: 635  ccgttttgggagccaaactctcttgaagctg 665
            || ||||||| |||| ||| | |||||||||
Sbjct: 754  cc-ttttgggggccacactttgttgaagctg 725
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                            
Query: 439      gtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacccc 498
                ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  ||
Sbjct: 26290093 gtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaagacc 26290034

                                                                   
Query: 499      attctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 549
                 ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 26290033 gttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 26289983



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                     
Query: 613      gccatagaccttggggatcagcccgttttgggagccaaactctcttgaagctg 665
                ||||||||||||| |||||||||| ||||||| |||| ||| | |||||||||
Sbjct: 26289833 gccatagaccttgcggatcagccc-ttttgggggccacactttgttgaagctg 26289782
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>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455H11
          Length = 101607

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                         
Query: 439   gtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacccc 498
             ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  ||
Sbjct: 64721 gtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaagacc 64662

                                                                
Query: 499   attctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 549
              ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 64661 gttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 64611



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                  
Query: 613   gccatagaccttggggatcagcccgttttgggagccaaactctcttgaagctg 665
             ||||||||||||| |||||||||| ||||||| |||| ||| | |||||||||
Sbjct: 64461 gccatagaccttgcggatcagccc-ttttgggggccacactttgttgaagctg 64410
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>dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1332_C12
          Length = 67349

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 439  gtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacccc 498
            ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  ||
Sbjct: 9671 gtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaagacc 9612

                                                               
Query: 499  attctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 549
             ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 9611 gttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 9561



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 613  gccatagaccttggggatcagcccgttttgggagccaaactctcttgaagctg 665
            ||||||||||||| |||||||||| ||||||| |||| ||| | |||||||||
Sbjct: 9411 gccatagaccttgcggatcagccc-ttttgggggccacactttgttgaagctg 9360
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>gb|AC140545.26| Medicago truncatula clone mth2-11g18, complete sequence
          Length = 129414

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 464   tggcaatgggcaaaacatgagttgataaatacccc 498
             |||||||||||||||||||| || ||||| |||||
Sbjct: 89597 tggcaatgggcaaaacatgaatttataaacacccc 89563
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>gb|AC142145.3| Mus musculus BAC clone RP24-69D13 from chromosome 8, complete sequence
          Length = 169014

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 140   ctgccctatcatatcatatctc 161
             ||||||||||||||||||||||
Sbjct: 84096 ctgccctatcatatcatatctc 84117
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>emb|CR352233.9| Zebrafish DNA sequence from clone CH211-193J5 in linkage group 13,
             complete sequence
          Length = 149899

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 381   accagtcaccgaccgcttctgcgatt 406
             |||||| |||||||||||||||||||
Sbjct: 74910 accagttaccgaccgcttctgcgatt 74935
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>dbj|AK079493.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130059I02 product:unclassifiable, full
            insert sequence
          Length = 5143

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 140  ctgccctatcatatcatatctc 161
            ||||||||||||||||||||||
Sbjct: 4301 ctgccctatcatatcatatctc 4322
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>gb|AC011611.26| Homo sapiens 12 BAC RP11-290L1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179085

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 272   caaaggatatgatggtattaa 292
             |||||||||||||||||||||
Sbjct: 28071 caaaggatatgatggtattaa 28091
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>gb|AC007851.6|AC007851 Drosophila melanogaster, chromosome 2R, region 50C-50D, BAC clone
             BACR06M19, complete sequence
          Length = 183161

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 550   aaagccatttagaaactgaag 570
             |||||||||||||||||||||
Sbjct: 31575 aaagccatttagaaactgaag 31595
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>gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34 of 73 of the complete
              sequence
          Length = 287287

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 550    aaagccatttagaaactgaag 570
              |||||||||||||||||||||
Sbjct: 140665 aaagccatttagaaactgaag 140645
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>gb|AC024757.1| Caenorhabditis elegans cosmid Y37E11AL, complete sequence
          Length = 68130

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   acttgcacccatcttcttct 208
             ||||||||||||||||||||
Sbjct: 24890 acttgcacccatcttcttct 24871
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>ref|NM_197657.1| Oryza sativa (japonica cultivar-group) putative pectin acetylesterase
            (OSJNBa0015J15.27), mRNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 441  accatgtatcctgcctctcgctctggcaatgggcaaaaca 480
            ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 1027 accatgtttcctgcagctcactctggcaatgtgcaaaaca 988
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>gb|AC154107.3| Mus musculus BAC clone RP23-67L1 from chromosome 8, complete sequence
          Length = 246658

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   tatcatatcatatctcaggt 165
             ||||||||||||||||||||
Sbjct: 94286 tatcatatcatatctcaggt 94267
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>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
             sequence
          Length = 1194300

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   aaacttgcacccatcttctt 206
             ||||||||||||||||||||
Sbjct: 85591 aaacttgcacccatcttctt 85572
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>gb|AC147370.4| Mus musculus BAC clone RP24-243N3 from chromosome 12, complete sequence
          Length = 162528

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 638   ttttgggagccaaactctct 657
             ||||||||||||||||||||
Sbjct: 31420 ttttgggagccaaactctct 31439
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>ref|XM_572519.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNH03550) partial mRNA
          Length = 4866

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  aaacttgcacccatcttctt 206
            ||||||||||||||||||||
Sbjct: 3055 aaacttgcacccatcttctt 3074
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>gb|AC124450.3| Mus musculus BAC clone RP24-215C4 from chromosome 13, complete sequence
          Length = 157531

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    aattggcaatggaaagaatc 82
             ||||||||||||||||||||
Sbjct: 54849 aattggcaatggaaagaatc 54830
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>gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosome 8, complete sequence
          Length = 212949

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    tatcatatcatatctcaggt 165
              ||||||||||||||||||||
Sbjct: 208268 tatcatatcatatctcaggt 208249
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>gb|AC122430.4| Mus musculus BAC clone RP24-176F14 from chromosome 12, complete
             sequence
          Length = 172764

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 638   ttttgggagccaaactctct 657
             ||||||||||||||||||||
Sbjct: 41809 ttttgggagccaaactctct 41790
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>emb|AL355587.14| Human DNA sequence from clone RP11-561H23 on chromosome 10 Contains the
              3' end of a novel gene (KIAA1136) (FLJ37801) and a CpG
              island, complete sequence
          Length = 130039

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    cctaaagccatttagaaact 566
              ||||||||||||||||||||
Sbjct: 119229 cctaaagccatttagaaact 119248
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>gb|AC022884.12| Homo sapiens chromosome 18, clone RP11-449D8, complete sequence
          Length = 195139

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 445   tgtatcctgcctctcgctct 464
             ||||||||||||||||||||
Sbjct: 53508 tgtatcctgcctctcgctct 53489
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>emb|CR536602.5| Zebrafish DNA sequence from clone bGZ-160O4, complete sequence
          Length = 85135

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    atacgtgaaactaaaataac 106
             ||||||||||||||||||||
Sbjct: 47573 atacgtgaaactaaaataac 47592
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>gb|AC098655.2| Homo sapiens chromosome 1 clone RP11-293P10, complete sequence
          Length = 191978

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 550  aaagccatttagaaactgaa 569
            ||||||||||||||||||||
Sbjct: 8611 aaagccatttagaaactgaa 8592
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>gb|AC099672.2| Homo sapiens chromosome 1 clone RP11-286H10, complete sequence
          Length = 166441

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 550   aaagccatttagaaactgaa 569
             ||||||||||||||||||||
Sbjct: 98739 aaagccatttagaaactgaa 98758
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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 541     ttcattcctaaagccatttagaaa 564
               ||||| ||||||||||||||||||
Sbjct: 2554094 ttcatccctaaagccatttagaaa 2554071
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>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete
              sequence
          Length = 144798

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 441    accatgtatcctgcctctcgctctggcaatgggcaaaaca 480
              ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 129486 accatgtttcctgcagctcactctggcaatgtgcaaaaca 129447
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>gb|AC104458.2| Homo sapiens chromosome 1 clone RP5-1102E8, complete sequence
          Length = 135063

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 550  aaagccatttagaaactgaa 569
            ||||||||||||||||||||
Sbjct: 8222 aaagccatttagaaactgaa 8241
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 606     catctttgccatagaccttg 625
               ||||||||||||||||||||
Sbjct: 1616508 catctttgccatagaccttg 1616527
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>ref|NM_060898.1| Caenorhabditis elegans C17H1.8 (C17H1.8) mRNA, complete cds
          Length = 1419

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 271  tcaaaggatatgatggtattaaag 294
            ||||||||||||||||||| ||||
Sbjct: 1112 tcaaaggatatgatggtatgaaag 1135



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 271 tcaaaggatatgatggtattaaag 294
           ||||||||||||||||||| ||||
Sbjct: 608 tcaaaggatatgatggtatgaaag 631
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 441      accatgtatcctgcctctcgctctggcaatgggcaaaaca 480
                ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 21076220 accatgtttcctgcagctcactctggcaatgtgcaaaaca 21076259
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>dbj|AK130749.1| Homo sapiens cDNA FLJ27239 fis, clone SYN07821
          Length = 3027

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 550  aaagccatttagaaactgaa 569
            ||||||||||||||||||||
Sbjct: 1139 aaagccatttagaaactgaa 1158
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>dbj|AK064698.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-G02, full
            insert sequence
          Length = 1807

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 441  accatgtatcctgcctctcgctctggcaatgggcaaaaca 480
            ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 1405 accatgtttcctgcagctcactctggcaatgtgcaaaaca 1366
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 441      accatgtatcctgcctctcgctctggcaatgggcaaaaca 480
                ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 21087484 accatgtttcctgcagctcactctggcaatgtgcaaaaca 21087523
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>emb|Z92777.1|CEC17H1 Caenorhabditis elegans Cosmid C17H1, complete sequence
          Length = 37261

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 271   tcaaaggatatgatggtattaaag 294
             ||||||||||||||||||| ||||
Sbjct: 26517 tcaaaggatatgatggtatgaaag 26494



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 271   tcaaaggatatgatggtattaaag 294
             ||||||||||||||||||| ||||
Sbjct: 22223 tcaaaggatatgatggtatgaaag 22200


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,292,943
Number of Sequences: 3902068
Number of extensions: 5292943
Number of successful extensions: 89757
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89581
Number of HSP's gapped (non-prelim): 168
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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