ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18h06 |
|---|---|
| Clone Library Name | barley_pub |
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 85.9 bits (211), Expect = 1e-16 Identities = 51/141 (36%), Positives = 82/141 (58%) Frame = -1 Query: 659 KSYIVISIGCGTSSLPKLKYSAKDAAKWGILSWLVKDGTVPILDMFNAASADMVDFHLSV 480 K +++S+G GT+S Y+A++AAKWG L W++ I M NAAS+ M D+++S Sbjct: 251 KQMLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWMLA-----IQQMTNAASSYMTDYYIST 305 Query: 479 LSAILGSSHQYLRIQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNV 300 + S + YLR+Q + L+G+ +DD S+AN++ LV++G+ LL + VS E Sbjct: 306 VFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPE----- 360 Query: 299 EVPGGGTNAEELAKYARQLSD 237 T E L ++A+ LSD Sbjct: 361 ------TYEEALKRFAKLLSD 375
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 85.9 bits (211), Expect = 1e-16 Identities = 51/141 (36%), Positives = 82/141 (58%) Frame = -1 Query: 659 KSYIVISIGCGTSSLPKLKYSAKDAAKWGILSWLVKDGTVPILDMFNAASADMVDFHLSV 480 K +++S+G GT+S Y+A++AAKWG L W++ I M NAAS+ M D+++S Sbjct: 251 KQMLLLSLGTGTNSEFDKTYTAEEAAKWGPLRWMLA-----IQQMTNAASSYMTDYYIST 305 Query: 479 LSAILGSSHQYLRIQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNV 300 + S + YLR+Q + L+G+ +DD S+AN++ LV++G+ LL + VS E Sbjct: 306 VFQARHSQNNYLRVQENALNGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPE----- 360 Query: 299 EVPGGGTNAEELAKYARQLSD 237 T E L ++A+ LSD Sbjct: 361 ------TYEEALKRFAKLLSD 375
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 85.9 bits (211), Expect = 1e-16 Identities = 51/141 (36%), Positives = 82/141 (58%) Frame = -1 Query: 659 KSYIVISIGCGTSSLPKLKYSAKDAAKWGILSWLVKDGTVPILDMFNAASADMVDFHLSV 480 K +++S+G GT+S Y+A++AAKWG L W++ I M NAAS+ M D+++S Sbjct: 251 KQMLLLSLGTGTNSEFDKTYTAEEAAKWGPLRWMLA-----IQQMTNAASSYMTDYYIST 305 Query: 479 LSAILGSSHQYLRIQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNV 300 + S + YLR+Q + L+G+ +DD S+AN++ LV++G+ LL + VS E Sbjct: 306 VFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPE----- 360 Query: 299 EVPGGGTNAEELAKYARQLSD 237 T E L ++A+ LSD Sbjct: 361 ------TYEEALKRFAKLLSD 375
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 84.7 bits (208), Expect = 2e-16 Identities = 50/141 (35%), Positives = 81/141 (57%) Frame = -1 Query: 659 KSYIVISIGCGTSSLPKLKYSAKDAAKWGILSWLVKDGTVPILDMFNAASADMVDFHLSV 480 K +++S+G GT+S Y+A++ AKWG W++ I M +AAS+ M D++LS Sbjct: 251 KQMLLLSLGTGTTSEFDKTYTAEETAKWGTARWMLV-----IQKMTSAASSYMTDYYLST 305 Query: 479 LSAILGSSHQYLRIQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNV 300 L S + YLR+Q + L+G+ +DD S+AN+ LV++G++LL + VS + E Sbjct: 306 AFQALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLKKSVSKDNPE----- 360 Query: 299 EVPGGGTNAEELAKYARQLSD 237 T E L ++A+ LSD Sbjct: 361 ------TYEEALKRFAKLLSD 375
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 82.8 bits (203), Expect = 8e-16 Identities = 44/116 (37%), Positives = 73/116 (62%) Frame = -1 Query: 659 KSYIVISIGCGTSSLPKLKYSAKDAAKWGILSWLVKDGTVPILDMFNAASADMVDFHLSV 480 K +++S+G GT+S Y+A++AAKWG L W++ I + NAAS+ M D+++S Sbjct: 242 KQMLLLSLGTGTNSEFDKTYTAEEAAKWGPLRWMLA-----IQQLTNAASSYMTDYYIST 296 Query: 479 LSAILGSSHQYLRIQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLET 312 + S + YLR+Q + L+G+ +DD S+AN++ LV++G+ LL + VS ET Sbjct: 297 VFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPET 352
>APEA_CLOAB (Q97K30) Probable M18-family aminopeptidase 1 (EC 3.4.11.-)| Length = 465 Score = 35.0 bits (79), Expect = 0.20 Identities = 28/80 (35%), Positives = 41/80 (51%) Frame = -1 Query: 476 SAILGSSHQYLRIQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVE 297 SA LG I ++K +GS G C+ AN + + ++ L E V+ E G+ V+ Sbjct: 360 SAYLGKG-----IVFNKYTGSRGK-SGCNDANPEYIAELRRILSKESVNWQTAELGK-VD 412 Query: 296 VPGGGTNAEELAKYARQLSD 237 GGGT A LA+Y Q+ D Sbjct: 413 QGGGGTIAYILAEYGMQVID 432
>ARGC1_PSEPK (Q88QQ6) N-acetyl-gamma-glutamyl-phosphate reductase 1 (EC| 1.2.1.38) (AGPR 1) (N-acetyl-glutamate semialdehyde dehydrogenase 1) (NAGSA dehydrogenase 1) Length = 344 Score = 32.7 bits (73), Expect = 0.99 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = +3 Query: 231 ALIGELPCVLGELLRVCASTGHLHIP---AGLQVHPGHLLGEKLIPNL 365 A +G L C GE ++ A GH H+P GL++ G +G +P+L Sbjct: 188 AAVGSLFCEAGESMKAYAVKGHRHLPEISQGLRLAAGKDIGLTFVPHL 235
>CLPB_STAAS (Q6GAV1) Chaperone clpB| Length = 869 Score = 32.3 bits (72), Expect = 1.3 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = -1 Query: 440 IQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAEELA 261 I + + SA ID +K ++ V++ E++ +KV G + T +N EV N E LA Sbjct: 108 ISMEHILRSAMDIDQTTKHYINNKVEVIKEII-KKVRGGNHVTSQNPEV-----NYEALA 161 Query: 260 KYARQLSDE 234 KY R L +E Sbjct: 162 KYGRDLVEE 170
>CLPB_STAAR (Q6GIB2) Chaperone clpB| Length = 869 Score = 32.3 bits (72), Expect = 1.3 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = -1 Query: 440 IQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAEELA 261 I + + SA ID +K ++ V++ E++ +KV G + T +N EV N E LA Sbjct: 108 ISMEHILRSAMDIDQTTKHYINNKVEVIKEII-KKVRGGNHVTSQNPEV-----NYEALA 161 Query: 260 KYARQLSDE 234 KY R L +E Sbjct: 162 KYGRDLVEE 170
>CLPB_STAAN (Q7A6G6) Chaperone clpB| Length = 869 Score = 32.3 bits (72), Expect = 1.3 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = -1 Query: 440 IQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAEELA 261 I + + SA ID +K ++ V++ E++ +KV G + T +N EV N E LA Sbjct: 108 ISMEHILRSAMDIDQTTKHYINNKVEVIKEII-KKVRGGNHVTSQNPEV-----NYEALA 161 Query: 260 KYARQLSDE 234 KY R L +E Sbjct: 162 KYGRDLVEE 170
>CLPB_STAAM (Q99VB5) Chaperone clpB| Length = 869 Score = 32.3 bits (72), Expect = 1.3 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = -1 Query: 440 IQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAEELA 261 I + + SA ID +K ++ V++ E++ +KV G + T +N EV N E LA Sbjct: 108 ISMEHILRSAMDIDQTTKHYINNKVEVIKEII-KKVRGGNHVTSQNPEV-----NYEALA 161 Query: 260 KYARQLSDE 234 KY R L +E Sbjct: 162 KYGRDLVEE 170
>CLPB_STAAC (Q5HHB0) Chaperone clpB| Length = 869 Score = 32.3 bits (72), Expect = 1.3 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = -1 Query: 440 IQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAEELA 261 I + + SA ID +K ++ V++ E++ +KV G + T +N EV N E LA Sbjct: 108 ISMEHILRSAMDIDQTTKHYINNKVEVIKEII-KKVRGGNHVTSQNPEV-----NYEALA 161 Query: 260 KYARQLSDE 234 KY R L +E Sbjct: 162 KYGRDLVEE 170
>PTPR2_RAT (Q63475) Receptor-type tyrosine-protein phosphatase N2 precursor| (EC 3.1.3.48) (R-PTP-N2) (PTP NE-6) (PTPNE6) (Phogrin) Length = 1004 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%) Frame = +1 Query: 235 SSESCLAYLASSSAFVPPPGT------STFRPVSRSTPDTFSARSSSPI 363 S E+ L Y+A +SA PP T + RP+SR PD S + S I Sbjct: 185 SPENILTYVAHTSALTYPPATRVKYPDNLLRPLSRLQPDELSPKVDSDI 233
>EPN3_HUMAN (Q9H201) Epsin-3 (EPS-15-interacting protein 3)| Length = 632 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/50 (38%), Positives = 30/50 (60%) Frame = +1 Query: 316 SRSTPDTFSARSSSPIFTNLSKLALEQSSMEPALPLSLSYWMRRY*WEEP 465 SR +P ++++ SSSP +T+ + A Q+S E L L L+ M R E+P Sbjct: 179 SRGSPSSYNSSSSSPRYTSDLEQARPQTSGEEELQLQLALAMSREEAEKP 228
>PPDK_TREPA (O83728) Pyruvate, phosphate dikinase (EC 2.7.9.1) (Pyruvate,| orthophosphate dikinase) Length = 901 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 347 LAEKVSGVDLETGRNVEVPGGGTNAEELAKYARQLS 240 LA K VD + G +E+P +A+E+A+YA+ S Sbjct: 734 LALKAKEVDYKVGAMIELPAAALSADEIARYAQFFS 769
>GPMA_RALEJ (Q476J7) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 248 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/57 (26%), Positives = 31/57 (54%) Frame = -1 Query: 404 IDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAEELAKYARQLSDE 234 + +C K + R++ + +E +A D+++G+ V + G + L KY Q+SD+ Sbjct: 148 LTECLKDTVARVLPLWNESIAP-----DIQSGKRVVIAAHGNSIRALVKYLDQISDD 199
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 31.2 bits (69), Expect = 2.9 Identities = 19/55 (34%), Positives = 31/55 (56%) Frame = +1 Query: 235 SSESCLAYLASSSAFVPPPGTSTFRPVSRSTPDTFSARSSSPIFTNLSKLALEQS 399 SS S + +SSS+F+ +STF TP + S+ +SS + ++ + LAL S Sbjct: 226 SSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNAS 280
>CLPB_STAAW (Q8NXE7) Chaperone clpB| Length = 869 Score = 30.8 bits (68), Expect = 3.7 Identities = 23/69 (33%), Positives = 37/69 (53%) Frame = -1 Query: 440 IQYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAEELA 261 I + + SA ID +K ++ V++ E++ +KV G + T +N EV N + LA Sbjct: 108 ISMEHILRSAMDIDQTTKHYINNKVEVIKEII-KKVRGGNHVTSQNPEV-----NYKALA 161 Query: 260 KYARQLSDE 234 KY R L +E Sbjct: 162 KYGRDLVEE 170
>SYFA_PSEAE (Q9I0A3) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 338 Score = 30.4 bits (67), Expect = 4.9 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Frame = +3 Query: 243 ELPCVL--GELLRVCASTGHLHIPAGLQVHPGHLLGEKLIPNLHQPIQVGLGA 395 ++ CV+ G RVC TG L + VHP L + P Q G+GA Sbjct: 258 DIQCVICSGNGCRVCKQTGWLEVMGCGMVHPNVLRMSNIDPEKFQGFAFGMGA 310
>PTPR2_MOUSE (P80560) Receptor-type tyrosine-protein phosphatase N2 precursor| (EC 3.1.3.48) (R-PTP-N2) (PTP IA-2beta) (Protein tyrosine phosphatase-NP) (PTP-NP) Length = 1001 Score = 30.0 bits (66), Expect = 6.4 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Frame = +1 Query: 235 SSESCLAYLASSSAFVPPPGT------STFRPVSRSTPDTFSARSSSPI 363 S E+ L Y+A +SA PP T + RP SR PD S + I Sbjct: 185 SPENILTYVAHTSALTYPPATRAKYPDNLLRPFSRLQPDELSPKVDGDI 233
>GPMA2_LACPL (Q88T35) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| 2 (EC 5.4.2.1) (Phosphoglyceromutase 2) (PGAM 2) (BPG-dependent PGAM 2) (dPGM 2) Length = 230 Score = 30.0 bits (66), Expect = 6.4 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = -1 Query: 389 KANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAEELAKYARQLSDE 234 K L+R++ ++ +A K L G+NV + G + L+KY Q+SD+ Sbjct: 153 KVTLERVMPFWEDQIAPK-----LLDGKNVIIAAHGNSLRALSKYIEQISDD 199
>DRL11_ARATH (Q94HW3) Probable disease resistance protein RDL6/RF9| Length = 1049 Score = 30.0 bits (66), Expect = 6.4 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -1 Query: 650 IVISIGCGTSSLPKLKYSAKDAAKWGILSWLVKDGTVPIL 531 I++ G G L KLK S D G+ W+V+DG++P L Sbjct: 913 IMVCAGSGFPQLHKLKLSELD----GLEEWIVEDGSMPQL 948
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.0 bits (66), Expect = 6.4 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%) Frame = +1 Query: 289 PGTSTFRPVSRSTPDTFSARSSSPI--------FTNLSKLALEQSSMEPALPLS 426 PGT+T P RST T +A S +PI +T LS+ ++M A P S Sbjct: 2488 PGTATALPALRSTATTPTATSVTPIPSSSLGTTWTRLSQTTTPTATMSTATPSS 2541
>EPN3_MOUSE (Q91W69) Epsin-3 (EPS-15-interacting protein 3)| Length = 636 Score = 30.0 bits (66), Expect = 6.4 Identities = 18/50 (36%), Positives = 28/50 (56%) Frame = +1 Query: 316 SRSTPDTFSARSSSPIFTNLSKLALEQSSMEPALPLSLSYWMRRY*WEEP 465 SR +P ++++ SSSP + + + A Q+S E L L L+ M R E P Sbjct: 172 SRGSPSSYTSASSSPRYASDLEQARPQTSGEEELQLQLALAMSREEAERP 221
>THSB_DESMO (Q9V2T3) Thermosome subunit beta (Thermosome subunit 2) (Chaperonin| beta subunit) (Fragment) Length = 502 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = -1 Query: 407 SIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAEELAKYARQLS 240 S+ + L+RLV + + + +S V +PGGG ELAK+ R+L+ Sbjct: 355 SVSIVIRGGLERLVDEAERSIRDALSAVADALRDGKVIPGGGAAEIELAKHIRRLA 410
>SYFA_PSEF5 (Q4KEW0) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 338 Score = 29.6 bits (65), Expect = 8.3 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Frame = +3 Query: 243 ELPCVL--GELLRVCASTGHLHIPAGLQVHPGHLLGEKLIPNLHQPIQVGLGA 395 ++ CV+ G+ RVC TG L + VHP L + P Q G+GA Sbjct: 258 DMECVMCSGKGCRVCKQTGWLEVMGCGMVHPNVLRMSGIDPEEFQGFAFGMGA 310
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 29.6 bits (65), Expect = 8.3 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 2/100 (2%) Frame = +1 Query: 268 SSAFVPPPGTSTFRPVSRSTPDT--FSARSSSPIFTNLSKLALEQSSMEPALPLSLSYWM 441 SSA + P TST + S P T S+ S+SP T+ S + SS + S + Sbjct: 161 SSASIISPVTSTLSSTTSSNPTTTSLSSTSTSPSSTSTSPSSTSTSSSSTSTSSSSTSTS 220 Query: 442 RRY*WEEPRMAERTERWKSTMSALAALNMSRMGTVPSLTS 561 P + ST S+ + + S T S TS Sbjct: 221 SSSTSTSPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTS 260
>GPMA_CHLCH (Q3AU60) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 247 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/68 (25%), Positives = 32/68 (47%) Frame = -1 Query: 437 QYDKLSGSAGSIDDCSKANLDRLVKIGDELLAEKVSGVDLETGRNVEVPGGGTNAEELAK 258 +Y LS + + +C K + R + + E +A ++ GRNV + G + L K Sbjct: 137 RYASLSEAEVPLTECLKDTVARFLPLWHETIAPEI-----RKGRNVIIAAHGNSIRALVK 191 Query: 257 YARQLSDE 234 Y +S++ Sbjct: 192 YLDNVSED 199 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,084,173 Number of Sequences: 219361 Number of extensions: 1537750 Number of successful extensions: 5610 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5308 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5597 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
