ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome... 289 4e-75
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 289 4e-75
3dbj|AK069936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 4e-75
4gb|AY106159.1| Zea mays PCO146144 mRNA sequence 170 3e-39
5ref|NM_190557.1| Oryza sativa (japonica cultivar-group), predic... 133 6e-28
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
7dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
8dbj|AK100245.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 6e-28
9ref|NM_179798.1| Arabidopsis thaliana FTSH3; ATP-dependent pepti... 54 4e-04
10gb|AY063914.1| Arabidopsis thaliana putative AAA-type ATPase (At... 54 4e-04
11gb|AC005315.3| Arabidopsis thaliana chromosome 2 clone T9I4 map ... 54 4e-04
12gb|BT002743.1| Arabidopsis thaliana clone C104832 putative AAA-t... 54 4e-04
13gb|AC022699.11| Mus musculus chromosome 10, clone RP23-107I8, co... 44 0.41
14gb|AC146759.29| Medicago truncatula clone mth2-173e19, complete ... 44 0.41
15gb|AC007953.21| Homo sapiens 3 BAC RP11-2L8 (Roswell Park Cancer... 44 0.41
16gb|AC103549.6| Homo sapiens 3 BAC RP11-795G18 (Roswell Park Canc... 44 0.41
17gb|AC155940.6| Mus musculus 10 BAC RP24-94O5 (Roswell Park Cance... 44 0.41
18gb|AC120843.11| Mus musculus chromosome 12, clone RP23-71C5, com... 42 1.6
19ref|XM_751952.1| Ustilago maydis 521 hypothetical protein (UM008... 42 1.6
20emb|AL512286.6| Human DNA sequence from clone RP11-45J1 on chrom... 42 1.6
21emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 o... 42 1.6
22gb|AC159202.2| Mus musculus BAC clone RP23-297L21 from chromosom... 42 1.6
23gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, com... 40 6.4
24gb|AC147072.3| Pan troglodytes BAC clone RP43-168P22 from 7, com... 40 6.4
25gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, comp... 40 6.4
26gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome... 40 6.4
27gb|AC122249.4| Mus musculus BAC clone RP23-164F15 from 1, comple... 40 6.4
28gb|AC073346.12| Homo sapiens BAC clone RP11-736E3 from 7, comple... 40 6.4
29gb|AC101941.11| Mus musculus chromosome 7, clone RP24-112F21, co... 40 6.4
30dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 6.4
31gb|AC058822.6| Homo sapiens BAC clone RP11-809N18 from 4, comple... 40 6.4
32ref|NM_077513.3| Caenorhabditis elegans Heavy chain, Unconventio... 40 6.4
33gb|AC177808.2| Pan troglodytes BAC clone CH251-703A9 from chromo... 40 6.4
34gb|AC096866.2| Takifugu rubripes clone 247M18, complete sequence 40 6.4
35gb|AC092870.2| Takifugu rubripes clone 228A21, complete sequence 40 6.4
36gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.4
37emb|Z49661.1|SCYJR161C S.cerevisiae chromosome X reading frame O... 40 6.4
38emb|Z49660.1|SCYJR160C S.cerevisiae chromosome X reading frame O... 40 6.4
39emb|Z74296.1|SCYDL248W S.cerevisiae chromosome IV reading frame ... 40 6.4
40emb|Z74295.1|SCYDL247W S.cerevisiae chromosome IV reading frame ... 40 6.4
41emb|Z66563.1|CEF46C3 Caenorhabditis elegans Cosmid F46C3, comple... 40 6.4
42emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on ch... 40 6.4
43gb|AC169792.2| Rhesus Macaque BAC CH250-117K11 (Children's Hosp... 40 6.4 
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
             complete sequence
          Length = 131860

 Score =  289 bits (146), Expect = 4e-75
 Identities = 299/350 (85%)
 Strand = Plus / Minus

                                                                         
Query: 126   tcttcgtcctggaacccctgcttgaagaggtcatagtttgttagctcggctgccttgaag 185
             ||||| ||||||||||| |||||||||||||| ||||| ||| |||||| ||||||||| 
Sbjct: 80323 tcttcatcctggaacccttgcttgaagaggtcgtagttagttggctcggatgccttgaaa 80264

                                                                         
Query: 186   gggcggtctcctaataccctggtcagatcgtcctggtggaggacctccttctcgagcagc 245
             || || ||||||||||||||   || ||||||||||||||||||||||||||| ||||||
Sbjct: 80263 ggccgttctcctaataccctaaccaaatcgtcctggtggaggacctccttctcaagcagc 80204

                                                                         
Query: 246   aactccgcgataagagctacttgttccttcttctccgttaacaggtcaactgttcttttg 305
             |  || |||||    || ||||| ||||| | ||| |||| ||| || |||||| |||||
Sbjct: 80203 atttcagcgattttggcgacttgctccttgtgctcagttatcagttccactgtttttttg 80144

                                                                         
Query: 306   taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 365
             || |||||| ||||||||||||||||||||   |||||||||||||| ||||||||||||
Sbjct: 80143 tacgccttgccaacccattccctcacctcatcgtcgatgatggatgctgtttggttgctg 80084

                                                                         
Query: 366   taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 425
             ||||| ||| |||||||||||||||| |||||||||||||| || ||||| |||||||| 
Sbjct: 80083 taaggtttggtcatttcaaagccatcgtccctctgagggaaggacagaagcccaaccttt 80024

                                                               
Query: 426   tcgctgaagccatacacagcaacttgcgcgtatgtcatttttgtgacttt 475
             |||||||| || || |||||||| ||||| || |||||||| || |||||
Sbjct: 80023 tcgctgaaaccgtatacagcaacctgcgcataggtcattttggtaacttt 79974
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  289 bits (146), Expect = 4e-75
 Identities = 299/350 (85%)
 Strand = Plus / Minus

                                                                            
Query: 126      tcttcgtcctggaacccctgcttgaagaggtcatagtttgttagctcggctgccttgaag 185
                ||||| ||||||||||| |||||||||||||| ||||| ||| |||||| ||||||||| 
Sbjct: 22378688 tcttcatcctggaacccttgcttgaagaggtcgtagttagttggctcggatgccttgaaa 22378629

                                                                            
Query: 186      gggcggtctcctaataccctggtcagatcgtcctggtggaggacctccttctcgagcagc 245
                || || ||||||||||||||   || ||||||||||||||||||||||||||| ||||||
Sbjct: 22378628 ggccgttctcctaataccctaaccaaatcgtcctggtggaggacctccttctcaagcagc 22378569

                                                                            
Query: 246      aactccgcgataagagctacttgttccttcttctccgttaacaggtcaactgttcttttg 305
                |  || |||||    || ||||| ||||| | ||| |||| ||| || |||||| |||||
Sbjct: 22378568 atttcagcgattttggcgacttgctccttgtgctcagttatcagttccactgtttttttg 22378509

                                                                            
Query: 306      taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 365
                || |||||| ||||||||||||||||||||   |||||||||||||| ||||||||||||
Sbjct: 22378508 tacgccttgccaacccattccctcacctcatcgtcgatgatggatgctgtttggttgctg 22378449

                                                                            
Query: 366      taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 425
                ||||| ||| |||||||||||||||| |||||||||||||| || ||||| |||||||| 
Sbjct: 22378448 taaggtttggtcatttcaaagccatcgtccctctgagggaaggacagaagcccaaccttt 22378389

                                                                  
Query: 426      tcgctgaagccatacacagcaacttgcgcgtatgtcatttttgtgacttt 475
                |||||||| || || |||||||| ||||| || |||||||| || |||||
Sbjct: 22378388 tcgctgaaaccgtatacagcaacctgcgcataggtcattttggtaacttt 22378339
to top
>dbj|AK069936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039G20, full
            insert sequence
          Length = 2880

 Score =  289 bits (146), Expect = 4e-75
 Identities = 299/350 (85%)
 Strand = Plus / Minus

                                                                        
Query: 126  tcttcgtcctggaacccctgcttgaagaggtcatagtttgttagctcggctgccttgaag 185
            ||||| ||||||||||| |||||||||||||| ||||| ||| |||||| ||||||||| 
Sbjct: 2597 tcttcatcctggaacccttgcttgaagaggtcgtagttagttggctcggatgccttgaaa 2538

                                                                        
Query: 186  gggcggtctcctaataccctggtcagatcgtcctggtggaggacctccttctcgagcagc 245
            || || ||||||||||||||   || ||||||||||||||||||||||||||| ||||||
Sbjct: 2537 ggccgttctcctaataccctaaccaaatcgtcctggtggaggacctccttctcaagcagc 2478

                                                                        
Query: 246  aactccgcgataagagctacttgttccttcttctccgttaacaggtcaactgttcttttg 305
            |  || |||||    || ||||| ||||| | ||| |||| ||| || |||||| |||||
Sbjct: 2477 atttcagcgattttggcgacttgctccttgtgctcagttatcagttccactgtttttttg 2418

                                                                        
Query: 306  taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 365
            || |||||| ||||||||||||||||||||   |||||||||||||| ||||||||||||
Sbjct: 2417 tacgccttgccaacccattccctcacctcatcgtcgatgatggatgctgtttggttgctg 2358

                                                                        
Query: 366  taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 425
            ||||| ||| |||||||||||||||| |||||||||||||| || ||||| |||||||| 
Sbjct: 2357 taaggtttggtcatttcaaagccatcgtccctctgagggaaggacagaagcccaaccttt 2298

                                                              
Query: 426  tcgctgaagccatacacagcaacttgcgcgtatgtcatttttgtgacttt 475
            |||||||| || || |||||||| ||||| || |||||||| || |||||
Sbjct: 2297 tcgctgaaaccgtatacagcaacctgcgcataggtcattttggtaacttt 2248
to top
>gb|AY106159.1| Zea mays PCO146144 mRNA sequence
          Length = 1581

 Score =  170 bits (86), Expect = 3e-39
 Identities = 266/326 (81%)
 Strand = Plus / Minus

                                                                        
Query: 150  aagaggtcatagtttgttagctcggctgccttgaaggggcggtctcctaataccctggtc 209
            |||||||| ||||| ||| ||||   ||||||||| || || ||||||| ||||||||| 
Sbjct: 1206 aagaggtcgtagttggttggctccagtgccttgaatggacgttctcctagtaccctggtt 1147

                                                                        
Query: 210  agatcgtcctggtggaggacctccttctcgagcagcaactccgcgataagagctacttgt 269
            |||||||||||||| ||||| ||||||||||||||||| || |||||  | || ||||| 
Sbjct: 1146 agatcgtcctggtgtaggacttccttctcgagcagcaattctgcgatctgtgcaacttgc 1087

                                                                        
Query: 270  tccttcttctccgttaacaggtcaactgttcttttgtaggccttggcaacccattccctc 329
            ||||| | ||| |||| ||  ||||||||| | |||||||||||| ||||||||||||  
Sbjct: 1086 tccttgtgctctgttatcaattcaactgttttcttgtaggccttgccaacccattcccgg 1027

                                                                        
Query: 330  acctcagtatcgatgatggatgcagtttggttgctgtaaggcttgttcatttcaaagcca 389
            ||||||   |||||||||||||| || || || |||||||||||| ||||||| || |||
Sbjct: 1026 acctcatcgtcgatgatggatgctgtctgattactgtaaggcttgctcatttcgaaacca 967

                                                                        
Query: 390  tcctccctctgagggaaagatagaagaccaaccttatcgctgaagccatacacagcaact 449
             | ||  |||| ||||| || ||||| |||||||| || || || |||||||| || || 
Sbjct: 966  ccatctttctgggggaaggacagaagcccaaccttttcactaaaaccatacacggcgacc 907

                                      
Query: 450  tgcgcgtatgtcatttttgtgacttt 475
            || || ||||||||||| || |||||
Sbjct: 906  tgtgcatatgtcattttggtaacttt 881
to top
>ref|NM_190557.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2409

 Score =  133 bits (67), Expect = 6e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                        
Query: 306  taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 365
            |||||||| || |||||||||||||||||||| || ||||||||||| || ||| |||| 
Sbjct: 2159 taggccttagcgacccattccctcacctcagtgtcaatgatggatgccgtctggctgcta 2100

                                                                        
Query: 366  taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 425
            || || ||| |||| ||||| ||||||||||| ||||||||||| ||||| |||||||| 
Sbjct: 2099 tatggtttgctcatctcaaaaccatcctccctttgagggaaagaaagaaggccaaccttt 2040

                                   
Query: 426  tcgctgaagccatacacagcaac 448
            |||||||||||||| || |||||
Sbjct: 2039 tcgctgaagccatatactgcaac 2017



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 210  agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 256
            ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct: 2255 agatcatcctggtggagaacctctttctcaagcagcagctcggcgat 2209
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  133 bits (67), Expect = 6e-28
 Identities = 124/143 (86%)
 Strand = Plus / Plus

                                                                            
Query: 306      taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 365
                |||||||| || |||||||||||||||||||| || ||||||||||| || ||| |||| 
Sbjct: 36176258 taggccttagcgacccattccctcacctcagtgtcaatgatggatgccgtctggctgcta 36176317

                                                                            
Query: 366      taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 425
                || || ||| |||| ||||| ||||||||||| ||||||||||| ||||| |||||||| 
Sbjct: 36176318 tatggtttgctcatctcaaaaccatcctccctttgagggaaagaaagaaggccaaccttt 36176377

                                       
Query: 426      tcgctgaagccatacacagcaac 448
                |||||||||||||| || |||||
Sbjct: 36176378 tcgctgaagccatatactgcaac 36176400



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 210      agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 256
                ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct: 36176162 agatcatcctggtggagaacctctttctcaagcagcagctcggcgat 36176208
to top
>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406G08
          Length = 144233

 Score =  133 bits (67), Expect = 6e-28
 Identities = 124/143 (86%)
 Strand = Plus / Plus

                                                                         
Query: 306   taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 365
             |||||||| || |||||||||||||||||||| || ||||||||||| || ||| |||| 
Sbjct: 53271 taggccttagcgacccattccctcacctcagtgtcaatgatggatgccgtctggctgcta 53330

                                                                         
Query: 366   taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 425
             || || ||| |||| ||||| ||||||||||| ||||||||||| ||||| |||||||| 
Sbjct: 53331 tatggtttgctcatctcaaaaccatcctccctttgagggaaagaaagaaggccaaccttt 53390

                                    
Query: 426   tcgctgaagccatacacagcaac 448
             |||||||||||||| || |||||
Sbjct: 53391 tcgctgaagccatatactgcaac 53413



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 210   agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 256
             ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct: 53175 agatcatcctggtggagaacctctttctcaagcagcagctcggcgat 53221
to top
>dbj|AK100245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056H19, full
            insert sequence
          Length = 2766

 Score =  133 bits (67), Expect = 6e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                        
Query: 306  taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 365
            |||||||| || |||||||||||||||||||| || ||||||||||| || ||| |||| 
Sbjct: 2230 taggccttagcgacccattccctcacctcagtgtcaatgatggatgccgtctggctgcta 2171

                                                                        
Query: 366  taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 425
            || || ||| |||| ||||| ||||||||||| ||||||||||| ||||| |||||||| 
Sbjct: 2170 tatggtttgctcatctcaaaaccatcctccctttgagggaaagaaagaaggccaaccttt 2111

                                   
Query: 426  tcgctgaagccatacacagcaac 448
            |||||||||||||| || |||||
Sbjct: 2110 tcgctgaagccatatactgcaac 2088



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 210  agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 256
            ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct: 2326 agatcatcctggtggagaacctctttctcaagcagcagctcggcgat 2280
to top
>ref|NM_179798.1| Arabidopsis thaliana FTSH3; ATP-dependent peptidase/ ATPase AT2G29080
            (FTSH3) mRNA, complete cds
          Length = 3000

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 417  ccaaccttatcgctgaagccatacacagcaacttgcgcgtatgtcat 463
            |||||||| || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 2337 ccaaccttgtcactgaaaccatacacagctacttgcgcgtaagtcat 2291
to top
>gb|AY063914.1| Arabidopsis thaliana putative AAA-type ATPase (At2g29080) mRNA,
            complete cds
          Length = 2973

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 417  ccaaccttatcgctgaagccatacacagcaacttgcgcgtatgtcat 463
            |||||||| || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 2294 ccaaccttgtcactgaaaccatacacagctacttgcgcgtaagtcat 2248
to top
>gb|AC005315.3| Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete
             sequence
          Length = 108393

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 417   ccaaccttatcgctgaagccatacacagcaacttgcgcgtatgtcat 463
             |||||||| || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 70026 ccaaccttgtcactgaaaccatacacagctacttgcgcgtaagtcat 70072
to top
>gb|BT002743.1| Arabidopsis thaliana clone C104832 putative AAA-type ATPase
            (At2g29080) mRNA, complete cds
          Length = 2461

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 417  ccaaccttatcgctgaagccatacacagcaacttgcgcgtatgtcat 463
            |||||||| || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 2051 ccaaccttgtcactgaaaccatacacagctacttgcgcgtaagtcat 2005
to top
>gb|AC022699.11| Mus musculus chromosome 10, clone RP23-107I8, complete sequence
          Length = 225763

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 361   tgctgtaaggcttgttcatttcaaag 386
             ||||||||||| ||||||||||||||
Sbjct: 30349 tgctgtaaggcctgttcatttcaaag 30374
to top
>gb|AC146759.29| Medicago truncatula clone mth2-173e19, complete sequence
          Length = 133602

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                         
Query: 390   tcctccctctgagggaaagatagaagaccaaccttatcgctgaagccatacacagcaact 449
             ||||| || ||||||||||| || || ||||| || |||||||| ||||| |  |  |||
Sbjct: 74272 tcctctctttgagggaaagagaggaggccaactttttcgctgaaaccatagatggatact 74213

                                       
Query: 450   tgcgcgtatgtcatttttgtgacttt 475
             || || ||||||||||| ||||||||
Sbjct: 74212 tgagcatatgtcattttggtgacttt 74187
to top
>gb|AC007953.21| Homo sapiens 3 BAC RP11-2L8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152210

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 392    ctccctctgagggaaagataga 413
              ||||||||||||||||||||||
Sbjct: 113569 ctccctctgagggaaagataga 113548
to top
>gb|AC103549.6| Homo sapiens 3 BAC RP11-795G18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165139

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 392    ctccctctgagggaaagataga 413
              ||||||||||||||||||||||
Sbjct: 101056 ctccctctgagggaaagataga 101077
to top
>gb|AC155940.6| Mus musculus 10 BAC RP24-94O5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 211515

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 361    tgctgtaaggcttgttcatttcaaag 386
              ||||||||||| ||||||||||||||
Sbjct: 155720 tgctgtaaggcctgttcatttcaaag 155745
to top
>gb|AC120843.11| Mus musculus chromosome 12, clone RP23-71C5, complete sequence
          Length = 220627

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 380    ttcaaagccatcctccctctg 400
              |||||||||||||||||||||
Sbjct: 105584 ttcaaagccatcctccctctg 105564
to top
>ref|XM_751952.1| Ustilago maydis 521 hypothetical protein (UM00898.1) partial mRNA
          Length = 2583

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 227  gacctccttctcgagcagcaactccgcga 255
            |||||||||||||||||||| || |||||
Sbjct: 2388 gacctccttctcgagcagcagctgcgcga 2360
to top
>emb|AL512286.6| Human DNA sequence from clone RP11-45J1 on chromosome X Contains a
             prefoldin 4 (PFDN4) pseudogene, the 5' end of a novel gene
             and a CpG island, complete sequence
          Length = 91875

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 373   tgttcatttcaaagccatcct 393
             |||||||||||||||||||||
Sbjct: 15711 tgttcatttcaaagccatcct 15691
to top
>emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 on chromosome 20p12.3-13
            Contains STS and GSSs, complete sequence
          Length = 137739

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 346  tggatgcagtttggttgctgt 366
            |||||||||||||||||||||
Sbjct: 1878 tggatgcagtttggttgctgt 1898
to top
>gb|AC159202.2| Mus musculus BAC clone RP23-297L21 from chromosome 12, complete sequence
          Length = 210589

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 380    ttcaaagccatcctccctctg 400
              |||||||||||||||||||||
Sbjct: 200216 ttcaaagccatcctccctctg 200236
to top
>gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, complete sequence
          Length = 209825

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 144    tgcttgaagaggtcatagtttgtt 167
              |||||| |||||||||||||||||
Sbjct: 111149 tgcttggagaggtcatagtttgtt 111172
to top
>gb|AC147072.3| Pan troglodytes BAC clone RP43-168P22 from 7, complete sequence
          Length = 151952

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    ctacttgttccttcttctcc 281
              ||||||||||||||||||||
Sbjct: 142917 ctacttgttccttcttctcc 142936
to top
>gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, complete sequence
          Length = 213684

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    cttgttccttcttctccgtt 284
              ||||||||||||||||||||
Sbjct: 137381 cttgttccttcttctccgtt 137362
to top
>gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome 5, complete sequence
          Length = 198245

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   cttgttccttcttctccgtt 284
             ||||||||||||||||||||
Sbjct: 37961 cttgttccttcttctccgtt 37942
to top
>gb|AC122249.4| Mus musculus BAC clone RP23-164F15 from 1, complete sequence
          Length = 207471

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 144    tgcttgaagaggtcatagtttgtt 167
              |||||| |||||||||||||||||
Sbjct: 203925 tgcttggagaggtcatagtttgtt 203948
to top
>gb|AC073346.12| Homo sapiens BAC clone RP11-736E3 from 7, complete sequence
          Length = 180651

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   ctacttgttccttcttctcc 281
             ||||||||||||||||||||
Sbjct: 33453 ctacttgttccttcttctcc 33434
to top
>gb|AC101941.11| Mus musculus chromosome 7, clone RP24-112F21, complete sequence
          Length = 157117

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   tggttgctgtaaggcttgtt 376
             ||||||||||||||||||||
Sbjct: 70978 tggttgctgtaaggcttgtt 70997
to top
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    agcagcaactccgcgataag 259
              ||||||||||||||||||||
Sbjct: 802604 agcagcaactccgcgataag 802623
to top
>gb|AC058822.6| Homo sapiens BAC clone RP11-809N18 from 4, complete sequence
          Length = 170212

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     tgccatgtacagctgtgtag 21
             ||||||||||||||||||||
Sbjct: 91013 tgccatgtacagctgtgtag 90994
to top
>ref|NM_077513.3| Caenorhabditis elegans Heavy chain, Unconventional Myosin family
            member (hum-4) (hum-4) mRNA, complete cds
          Length = 8759

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 262  ctacttgttccttcttctcc 281
            ||||||||||||||||||||
Sbjct: 7968 ctacttgttccttcttctcc 7987
to top
>gb|AC177808.2| Pan troglodytes BAC clone CH251-703A9 from chromosome unknown,
            complete sequence
          Length = 207792

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    tgccatgtacagctgtgtag 21
            ||||||||||||||||||||
Sbjct: 3022 tgccatgtacagctgtgtag 3003
to top
>gb|AC096866.2| Takifugu rubripes clone 247M18, complete sequence
          Length = 53580

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   tgttcatttcaaagccatcc 392
             ||||||||||||||||||||
Sbjct: 27543 tgttcatttcaaagccatcc 27562
to top
>gb|AC092870.2| Takifugu rubripes clone 228A21, complete sequence
          Length = 70231

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   tgttcatttcaaagccatcc 392
             ||||||||||||||||||||
Sbjct: 68375 tgttcatttcaaagccatcc 68394
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 232     ccttctcgagcagcaactccgcga 255
               ||||||||||||||| ||||||||
Sbjct: 4928606 ccttctcgagcagcagctccgcga 4928583
to top
>emb|Z49661.1|SCYJR161C S.cerevisiae chromosome X reading frame ORF YJR161c
          Length = 5094

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 368  aggcttgttcatttcaaagc 387
            ||||||||||||||||||||
Sbjct: 1002 aggcttgttcatttcaaagc 1021
to top
>emb|Z49660.1|SCYJR160C S.cerevisiae chromosome X reading frame ORF YJR160c
          Length = 5730

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 368  aggcttgttcatttcaaagc 387
            ||||||||||||||||||||
Sbjct: 3701 aggcttgttcatttcaaagc 3720
to top
>emb|Z74296.1|SCYDL248W S.cerevisiae chromosome IV reading frame ORF YDL248w
          Length = 5984

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  aggcttgttcatttcaaagc 387
            ||||||||||||||||||||
Sbjct: 4983 aggcttgttcatttcaaagc 4964
to top
>emb|Z74295.1|SCYDL247W S.cerevisiae chromosome IV reading frame ORF YDL247w
          Length = 5729

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  aggcttgttcatttcaaagc 387
            ||||||||||||||||||||
Sbjct: 2030 aggcttgttcatttcaaagc 2011
to top
>emb|Z66563.1|CEF46C3 Caenorhabditis elegans Cosmid F46C3, complete sequence
          Length = 29777

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   ctacttgttccttcttctcc 281
             ||||||||||||||||||||
Sbjct: 11078 ctacttgttccttcttctcc 11059
to top
>emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on chromosome 15, complete
              sequence
          Length = 240977

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 380    ttcaaagccatcctccctct 399
              ||||||||||||||||||||
Sbjct: 182948 ttcaaagccatcctccctct 182929
to top
>gb|AC169792.2| Rhesus Macaque  BAC CH250-117K11 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 186393

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     tgccatgtacagctgtgtag 21
             ||||||||||||||||||||
Sbjct: 20044 tgccatgtacagctgtgtag 20063


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,696,754
Number of Sequences: 3902068
Number of extensions: 3696754
Number of successful extensions: 64168
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 64022
Number of HSP's gapped (non-prelim): 143
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top