Clone Information

BLAST Search Result

Clone Name	rbasd18h01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AFG32_HUMAN (Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-) (Parapleg...	100	3e-21
2	AF3G2_MOUSE (Q8JZQ2) AFG3-like protein 2 (EC 3.4.24.-)	99	1e-20
3	AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-)	94	3e-19
4	AFG3_YEAST (P39925) Mitochondrial respiratory chain complexes as...	90	6e-18
5	RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes as...	82	2e-15
6	SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia...	67	4e-11
7	YME1_CAEEL (P54813) Protein YME1 homolog (EC 3.4.24.-)	64	6e-10
8	FTSH_TREPA (O83746) Cell division protein ftsH homolog (EC 3.4.2...	55	2e-07
9	FTSH_BACSU (P37476) Cell division protein ftsH homolog (EC 3.4.2...	55	2e-07
10	FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chlor...	55	3e-07
11	FTSH_MYCTU (P0A4V8) Cell division protein ftsH homolog (EC 3.4.2...	53	1e-06
12	FTSH_MYCBO (P0A4V9) Cell division protein ftsH homolog (EC 3.4.2...	53	1e-06
13	FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chlor...	52	1e-06
14	FTSH4_SYNY3 (P72991) Cell division protein ftsH homolog 4 (EC 3....	52	2e-06
15	FTSH_LACLA (P46469) Cell division protein ftsH homolog (EC 3.4.2...	51	3e-06
16	FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloropl...	50	5e-06
17	FTSH_MEDSA (Q9BAE0) Cell division protein ftsH homolog, chloropl...	50	7e-06
18	FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.2...	50	7e-06
19	FTSH_MYCLE (Q9CD58) Cell division protein ftsH homolog (EC 3.4.2...	50	9e-06
20	FTSH3_SYNY3 (P73437) Cell division protein ftsH homolog 3 (EC 3....	49	2e-05
21	FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloropl...	47	4e-05
22	FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.2...	47	4e-05
23	FTSH_STRR6 (P59652) Cell division protein ftsH homolog (EC 3.4.2...	47	6e-05
24	FTSH_STRPN (O69076) Cell division protein ftsH homolog (EC 3.4.2...	47	6e-05
25	FTSH_GUITH (O78516) Cell division protein ftsH homolog (EC 3.4.2...	44	4e-04
26	YME1_SCHMA (P46508) Protein YME1 homolog (EC 3.4.24.-)	43	8e-04
27	FTSH_SHIFL (P0AAI4) Cell division protein ftsH (EC 3.4.24.-)	42	0.001
28	FTSH_ECOLI (P0AAI3) Cell division protein ftsH (EC 3.4.24.-)	42	0.001
29	FTSH_ECO57 (Q8X9L0) Cell division protease ftsH (EC 3.4.24.-)	42	0.001
30	FTSH_PORPU (P51327) Cell division protein ftsH homolog (EC 3.4.2...	42	0.002
31	FTSH_BUCBP (Q89AF2) Cell division protein ftsH (EC 3.4.24.-)	42	0.002
32	FTSH_SALTY (P63343) Cell division protease ftsH (EC 3.4.24.-)	42	0.002
33	FTSH_SALTI (P63344) Cell division protease ftsH (EC 3.4.24.-)	42	0.002
34	YME1_YEAST (P32795) Protein YME1 (EC 3.4.24.-) (TAT-binding homo...	40	0.005
35	FTSH_MYCGE (P47695) Cell division protein ftsH homolog (EC 3.4.2...	40	0.007
36	FTSH_HELPY (P71408) Cell division protein ftsH homolog (EC 3.4.2...	40	0.009
37	FTSH_ODOSI (P49825) Cell division protein ftsH homolog (EC 3.4.2...	40	0.009
38	FTSH_BUCAP (Q8K9G8) Cell division protein ftsH (EC 3.4.24.-)	39	0.016
39	FTSH_BUCAI (P57462) Cell division protein ftsH (EC 3.4.24.-)	39	0.016
40	FTSH_MYCPN (P75120) Cell division protein ftsH homolog (EC 3.4.2...	39	0.016
41	FTSH_HELFE (O32617) Cell division protein ftsH homolog (EC 3.4.2...	39	0.016
42	YMEL1_RAT (Q925S8) ATP-dependent metalloprotease YME1L1 (EC 3.4....	37	0.059
43	YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3....	37	0.059
44	UL61_HCMVA (P16818) Hypothetical protein UL61	36	0.10
45	YMEL1_HUMAN (Q96TA2) ATP-dependent metalloprotease YME1L1 (EC 3....	36	0.10
46	CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 ...	35	0.29
47	ATRX_DROME (Q9GQN5) Transcriptional regulator ATRX homolog (EC 3...	33	0.65
48	DPO3A_MYCTU (P63977) DNA polymerase III alpha subunit (EC 2.7.7.7)	33	0.65
49	DPO3A_MYCBO (P63978) DNA polymerase III alpha subunit (EC 2.7.7.7)	33	0.65
50	YQFW_BACSU (P54480) Putative nucleotidase yqfW (EC 3.1.3.-)	32	1.5
51	HCN1_HUMAN (O60741) Potassium/sodium hyperpolarization-activated...	32	1.9
52	COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor	31	3.2
53	COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)	31	3.2
54	SETB1_HUMAN (Q15047) Histone-lysine N-methyltransferase, H3 lysi...	31	4.2
55	ASIP_CANFA (Q5UK76) Agouti signaling protein precursor (ASP) (Ag...	31	4.2
56	VRK2_MOUSE (Q8BN21) Serine/threonine-protein kinase VRK2 (EC 2.7...	31	4.2
57	MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia p...	31	4.2
58	ZN436_PONPY (Q5R5Y7) Zinc finger protein 436	31	4.2
59	MRE11_ARATH (Q9XGM2) Double-strand break repair protein MRE11	30	5.5
60	HCN1_RABIT (Q9MZS1) Potassium/sodium hyperpolarization-activated...	30	5.5
61	SECA_ARATH (Q9SYI0) Preprotein translocase secA subunit, chlorop...	30	5.5
62	FTSH_CYACA (O19922) Cell division protein ftsH homolog (EC 3.4.2...	30	7.2
63	VGLE_PRVRI (P08354) Glycoprotein GI precursor	30	7.2
64	FTSH_MYCPU (Q98PE4) Cell division protein ftsH homolog (EC 3.4.2...	30	7.2
65	SETB1_MOUSE (O88974) Histone-lysine N-methyltransferase, H3 lysi...	30	7.2
66	RBP1_RAT (Q62796) RalA-binding protein 1 (RalBP1) (Ral-interacti...	30	7.2
67	CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor	30	7.2
68	CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [U...	30	9.4
69	DPOLN_HUMAN (Q7Z5Q5) DNA polymerase nu (EC 2.7.7.7)	30	9.4
70	F112A_BOVIN (Q3T026) Protein FAM112A	30	9.4
71	CAD23_HUMAN (Q9H251) Cadherin-23 precursor (Otocadherin)	30	9.4
72	GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)	30	9.4

>AFG32_HUMAN (Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-) (Paraplegin-like protein)|
          Length = 797

 Score =  100 bits (250), Expect = 3e-21
 Identities = 60/127 (47%), Positives = 79/127 (62%), Gaps = 3/127 (2%)
 Frame = -3

Query: 707  TKMTYAQVAVYGFSDKVGLLSFP-QREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTV 531
            T+  YAQ+  +G ++KVG +SF   R+    + KPYS  TA +ID EVR  +  AYKRTV
Sbjct: 654  TQSAYAQIVQFGMNEKVGQISFDLPRQGDMVLEKPYSEATARLIDDEVRILINDAYKRTV 713

Query: 530  DLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQ--GFQDEEGK 357
             LLTEKK  V  +A LLLEKEVL ++D+  +LG RPF  AE + Y+ F +  G  DE+  
Sbjct: 714  ALLTEKKADVEKVALLLLEKEVLDKNDMVELLGPRPF--AEKSTYEEFVEGTGSLDEDTS 771

Query: 356  TAEPTKD 336
              E  KD
Sbjct: 772  LPEGLKD 778

to top

>AF3G2_MOUSE (Q8JZQ2) AFG3-like protein 2 (EC 3.4.24.-)|
          Length = 802

 Score = 99.4 bits (246), Expect = 1e-20
 Identities = 57/130 (43%), Positives = 81/130 (62%), Gaps = 1/130 (0%)
 Frame = -3

Query: 707  TKMTYAQVAVYGFSDKVGLLSFP-QREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTV 531
            T+  YAQ+  +G ++KVG +SF   R+    + KPYS  TA +ID EVR  ++ AY+RTV
Sbjct: 653  TQSAYAQIVQFGMNEKVGQISFDLPRQGDMVLEKPYSEATARMIDDEVRILISDAYRRTV 712

Query: 530  DLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTA 351
             LLTEKK  V  +A LLLEKEVL ++D+ ++LG RPF   E + Y+ F +G       T 
Sbjct: 713  ALLTEKKADVEKVALLLLEKEVLDKNDMVQLLGPRPF--TEKSTYEEFVEG-------TG 763

Query: 350  EPTKDTEVPD 321
               +DT +P+
Sbjct: 764  SLDEDTSLPE 773

to top

>AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-)|
          Length = 663

 Score = 94.4 bits (233), Expect = 3e-19
 Identities = 55/122 (45%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEM-NKPYSNQTASIIDTEVREWVAKAYKRTV 531
           T+  YAQ+  +G S+K+G +SF     G  M  KPYS  TA +ID EVR  V  AY RT+
Sbjct: 520 TQSAYAQIVQFGMSEKLGQVSFDFPRQGETMVEKPYSEATAQLIDEEVRCLVRSAYNRTL 579

Query: 530 DLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTA 351
           +LLT+ +EQV  +   LLEKEVL + D+  +LG RPF  AE + Y+ F +G    E  T+
Sbjct: 580 ELLTQCREQVEKVGRRLLEKEVLEKADMIELLGPRPF--AEKSTYEEFVEGTGSLEEDTS 637

Query: 350 EP 345
            P
Sbjct: 638 LP 639

to top

>AFG3_YEAST (P39925) Mitochondrial respiratory chain complexes assembly protein|
           AFG3 (EC 3.4.24.-) (TAT-binding homolog 10)
          Length = 761

 Score = 90.1 bits (222), Expect = 6e-18
 Identities = 50/129 (38%), Positives = 76/129 (58%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTVD 528
           T+M  A V   G S K+G LSF Q +  F++NKP+SN+TA  ID EV+  V  A++   +
Sbjct: 639 TQMANAMVTSLGMSPKIGYLSFDQNDGNFKVNKPFSNKTARTIDLEVKSIVDDAHRACTE 698

Query: 527 LLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAE 348
           LLT+  ++V L+A+ LL KE + ++D+ R+LG RPFK           + F+    K  +
Sbjct: 699 LLTKNLDKVDLVAKELLRKEAITREDMIRLLGPRPFKER--------NEAFE----KYLD 746

Query: 347 PTKDTEVPD 321
           P  +TE P+
Sbjct: 747 PKSNTEPPE 755

to top

>RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes assembly protein|
            RCA1 (EC 3.4.24.-) (TAT-binding homolog 12)
          Length = 825

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
 Frame = -3

Query: 707  TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTVD 528
            T M  A V   G SDK+G +++ +R+D  ++ KP+S++T  IID+EV   V + + R   
Sbjct: 694  TSMATAMVTELGMSDKIGWVNYQKRDDS-DLTKPFSDETGDIIDSEVYRIVQECHDRCTK 752

Query: 527  LLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAE------LTNYDLFKQGFQDE 366
            LL EK E V  IA++LL+KEVL ++D+  +LG RPF          L +Y+  K   ++E
Sbjct: 753  LLKEKAEDVEKIAQVLLKKEVLTREDMIDLLGKRPFPERNDAFDKYLNDYETEKIRKEEE 812

Query: 365  EG-KTAEPTKDT 333
            +  K  EP   T
Sbjct: 813  KNEKRNEPKPST 824

to top

>SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia protein 7)|
          Length = 795

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 35/130 (26%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
 Frame = -3

Query: 707  TKMTYAQVAVYGFSDKVGLLSFPQREDGFEM--NKPYSNQTASIIDTEVREWVAKAYKRT 534
            T++ Y+ V  +G +  +G +SFP+ ++G      +P+S     ++D E R  VAKAY+ T
Sbjct: 655  TRIAYSMVKQFGMAPGIGPISFPEAQEGLMGIGRRPFSQGLQQMMDHEARLLVAKAYRHT 714

Query: 533  VDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKT 354
              +L +  +++  +A  LLEKEV++ +D+  ++G  P    ++     +    ++++   
Sbjct: 715  EKVLQDNLDKLQALANALLEKEVINYEDIEALIGPPPHGPKKMIAPQRWIDAQREKQDLG 774

Query: 353  AEPTKDTEVP 324
             E T++T+ P
Sbjct: 775  EEETEETQQP 784

to top

>YME1_CAEEL (P54813) Protein YME1 homolog (EC 3.4.24.-)|
          Length = 676

 Score = 63.5 bits (153), Expect = 6e-10
 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMNK--PYSNQTASIIDTEVREWVAKAYKRT 534
           T++    V V+G SDKVGL  F  +++   + K    + QTA +ID E+   + ++YKR 
Sbjct: 545 TQLAVQMVKVFGMSDKVGLRDFTAQDNESALVKVSDLAPQTAELIDAEINRVLQESYKRA 604

Query: 533 VDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFK 417
             +L  KK++  L+AE LLE E L  D++ RV+  +  K
Sbjct: 605 KVILETKKKEHQLLAEALLEYETLSADEVKRVISGQKIK 643

to top

>FTSH_TREPA (O83746) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 609

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGF----EMNKPYSNQTASIIDTEVREWVAKAYK 540
           T +    +  YG S+K   ++  +R  G+    ++ + YS  T   +D EV   +A+ Y+
Sbjct: 484 TDIVRKMITDYGMSEKFQNVALTRRGTGYLAEPQLAREYSECTQQYVDEEVARVLAERYR 543

Query: 539 RTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVL 435
             V LLTEKKE +  IA  LLE+E + +D+   V+
Sbjct: 544 AVVALLTEKKELLEYIATRLLERETIERDEFEEVI 578

to top

>FTSH_BACSU (P37476) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDG-------FEMNKPYSNQTASIIDTEVREWVAK 549
           T +    V  +G S+K+G L F Q + G       F   + YS+Q A  ID E++  + +
Sbjct: 504 TNIARRMVTEFGMSEKLGPLQFGQSQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRIIKE 563

Query: 548 AYKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVL 435
            Y+R   +LTE ++++ LIA+ LL+ E L  + +  ++
Sbjct: 564 CYERAKQILTENRDKLELIAQTLLKVETLDAEQIKHLI 601

to top

>FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 716

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
 Frame = -3

Query: 677 YGFSDKVGLLSF------PQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTVDLLTE 516
           +GFS K+G ++       P         K YS  TA I+D EVRE V KAYKR  +++T 
Sbjct: 620 FGFSKKIGQVAVGGPGGNPFMGQQMSSQKDYSMATADIVDAEVRELVEKAYKRATEIITT 679

Query: 515 KKEQVALIAELLLEKEVLHQDDLTRVLGD 429
             + +  +A+LL+EKE +  ++   +  D
Sbjct: 680 HIDILHKLAQLLIEKETVDGEEFMSLFID 708

to top

>FTSH_MYCTU (P0A4V8) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 760

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSF-PQREDGF-----EMNKPYSNQTASIIDTEVREWVAKA 546
           TK+  + V  +G S K+G + +  +  D F          YS++ A  ID EVR+ +  A
Sbjct: 506 TKIARSMVTEFGMSSKLGAVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAA 565

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLF 387
           +    ++LTE ++ +  +A  LLEKE LH+ +L  +  D   K   LT +D F
Sbjct: 566 HTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFADVE-KRPRLTMFDDF 617

to top

>FTSH_MYCBO (P0A4V9) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 760

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSF-PQREDGF-----EMNKPYSNQTASIIDTEVREWVAKA 546
           TK+  + V  +G S K+G + +  +  D F          YS++ A  ID EVR+ +  A
Sbjct: 506 TKIARSMVTEFGMSSKLGAVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAA 565

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLF 387
           +    ++LTE ++ +  +A  LLEKE LH+ +L  +  D   K   LT +D F
Sbjct: 566 HTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFADVE-KRPRLTMFDDF 617

to top

>FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 704

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSF------PQREDGFEMNKPYSNQTASIIDTEVREWVAKA 546
           +++    V  +GFS K+G ++       P         K YS  TA ++D EVRE V KA
Sbjct: 598 SRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQSMSSQKDYSMATADVVDAEVRELVEKA 657

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGD 429
           Y R  +++T + + +  +A+LL+EKE +  ++   +  D
Sbjct: 658 YVRAKEIITTQIDILHKLAQLLIEKETVDGEEFMSLFID 696

to top

>FTSH4_SYNY3 (P72991) Cell division protein ftsH homolog 4 (EC 3.4.24.-)|
          Length = 616

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
 Frame = -3

Query: 686 VAVYGFSDKVGLLSFPQREDGFEM------NKPYSNQTASIIDTEVREWVAKAYKRTVDL 525
           V  +G SD++G ++  ++  G  +      ++ +S++TA+ ID EV + V +AY+R   +
Sbjct: 516 VTRFGMSDRLGPVALGRQGGGVFLGRDIASDRDFSDETAAAIDEEVSQLVDQAYQRAKQV 575

Query: 524 LTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAEL 405
           L E +  +  +AE+L+EKE +  ++L  +L +   K A L
Sbjct: 576 LVENRGILDQLAEILVEKETVDSEELQTLLANNNAKLALL 615

to top

>FTSH_LACLA (P46469) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 695

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGF-----EMNKPYSNQTASIIDTEVREWVAKAY 543
           T +  + V  YG S K+G++S+      F        K YS  TA +ID EVR  + +AY
Sbjct: 537 THIARSMVTEYGMSKKLGMVSYEGDHQVFIGRDYGQTKTYSEATAVMIDDEVRRILGEAY 596

Query: 542 KRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVL--GDRPFK--AAELTNYDLFKQGF 375
            R  + +   +EQ   IAE LL+ E L    +  +   G  P +  AAE+     F++  
Sbjct: 597 DRAKEAIETHREQHKAIAEALLKYETLDAKQIMSLFKTGKMPDEAAAAEVPEPKTFEESL 656

Query: 374 QD 369
           +D
Sbjct: 657 KD 658

to top

>FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-) (DS9)
          Length = 714

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
 Frame = -3

Query: 674 GFSDKVGLLSF------PQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTVDLLTEK 513
           GFS K+G ++       P         K YS  TA ++D EVRE V +AY+R  +++T  
Sbjct: 612 GFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDAEVRELVERAYERATEIITTH 671

Query: 512 KEQVALIAELLLEKEVLHQDDLTRVLGD 429
            + +  +A+LL+EKE +  ++   +  D
Sbjct: 672 IDILHKLAQLLIEKETVDGEEFMSLFID 699

to top

>FTSH_MEDSA (Q9BAE0) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-)
          Length = 706

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSF------PQREDGFEMNKPYSNQTASIIDTEVREWVAKA 546
           +++    V  +GFS K+G ++       P         K YS  TA I+D EVRE V KA
Sbjct: 600 SRVARQMVERFGFSKKIGQVAIGGGGGNPFLGQQMSSQKDYSMATADIVDKEVRELVDKA 659

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGD 429
           Y+R   ++    + +  +A+LL+EKE +  ++   +  D
Sbjct: 660 YERATQIINTHIDILHKLAQLLIEKETVDGEEFMSLFID 698

to top

>FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQRED---GFEMNKPYSNQTASIIDTEVREWVAKAYKR 537
           T +  A V   G SD +G +      D   G + N   S  TA +ID EV+  + + Y+ 
Sbjct: 500 TNIARAMVTKAGLSDLIGPIFHGSSGDDMYGRQPNNETSEATAELIDAEVKRIITQGYEF 559

Query: 536 TVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQG-FQDEEG 360
             D+LT+  +Q+  +A  L+E E L    +  +L  R   + E   +        + ++ 
Sbjct: 560 AKDILTKHIDQLHTLANALIEYETLSGQQIKNLLSGRALDSEEENKFPFNDSSTIKIDKE 619

Query: 359 KTAEPTKDTEVPDDD 315
           K+ E TK T+   ++
Sbjct: 620 KSPEKTKTTKAKKEN 634

to top

>FTSH_MYCLE (Q9CD58) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 787

 Score = 49.7 bits (117), Expect = 9e-06
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSF-PQREDGF-----EMNKPYSNQTASIIDTEVREWVAKA 546
           TK+  + V  +G S K+G + +  +  D F          YS++ A  ID EVR+ +  A
Sbjct: 506 TKIARSMVTEFGMSSKLGAVRYGSEHGDPFLGRTMGTQADYSHEVARDIDDEVRKLIEAA 565

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLF 387
           +    ++LTE ++ +  +A  LLEKE LH+ +L  +      K   LT +D F
Sbjct: 566 HTEAWEILTEYRDVLDTLAGELLEKETLHRPELEGIFASVE-KRPRLTMFDDF 617

to top

>FTSH3_SYNY3 (P73437) Cell division protein ftsH homolog 3 (EC 3.4.24.-)|
          Length = 628

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQRED----GFEMNKP---YSNQTASIIDTEVREWVAK 549
           T +    V  YG S  +G L++ + +     G  M  P    S+ TA  ID EV+E V +
Sbjct: 520 TDLAEQMVTTYGMSKVLGPLAYDKGQQNNFLGQGMGNPRRMVSDDTAKEIDLEVKEIVEQ 579

Query: 548 AYKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLG 432
            + + + +L   ++ +  IAE +LEKEV+  ++L  +LG
Sbjct: 580 GHNQALAILEHNRDLLEAIAEKILEKEVIEGEELHHLLG 618

to top

>FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-) (Fragment)
          Length = 662

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
 Frame = -3

Query: 674 GFSDKVGLLSF------PQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTVDLLTEK 513
           GFS K+G ++       P         K YS  TA ++D+EVRE V KAY+R   ++T  
Sbjct: 589 GFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDSEVRELVEKAYERAKQIITTH 648

Query: 512 KEQVALIAELLLEK 471
            + +  +A+LL+EK
Sbjct: 649 IDILHKLAQLLIEK 662

to top

>FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQRED---GFEMNKPYSNQTASIIDTEVREWVAKAYKR 537
           T +  A V   G SD +G +      D   G + +   S  TA +ID EV+  + + Y+ 
Sbjct: 500 TNIARAMVTKAGLSDLIGPIFHGSNSDDMYGRQSSNEISEATAELIDAEVKRIITQGYEF 559

Query: 536 TVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAE 408
             D+LT+  +Q+  +A  L+E E L    +  +L  R   + E
Sbjct: 560 AKDILTKHIDQLHTLANALIEYETLSGQQIKNLLSGRALDSEE 602

to top

>FTSH_STRR6 (P59652) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 652

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMNKPY---SNQTASIIDTEVREWVAKAYKR 537
           T+M  A V  YG S+K+G + +           P    S QTA  ID EVR  + +A  +
Sbjct: 530 TQMARAMVTEYGMSEKLGPVQYEGNHAMLGAQSPQKSISEQTAYEIDEEVRSLLNEARNK 589

Query: 536 TVDLLTEKKEQVALIAELLLEKEVLHQDDL-----TRVLGDRPFKAAELTNYDLFKQGFQ 372
             +++   +E   LIAE LL+ E L    +     T  + +   + +   +YD  K    
Sbjct: 590 AAEIIQSNRETHKLIAEALLKYETLDSTQIKALYETGKMPEAVEEESHALSYDEVKSKMN 649

Query: 371 DEE 363
           DE+
Sbjct: 650 DEK 652

to top

>FTSH_STRPN (O69076) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 652

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMNKPY---SNQTASIIDTEVREWVAKAYKR 537
           T+M  A V  YG S+K+G + +           P    S QTA  ID EVR  + +A  +
Sbjct: 530 TQMARAMVTEYGMSEKLGPVQYEGNHAMLGAQSPQKSISEQTAYEIDEEVRSLLNEARNK 589

Query: 536 TVDLLTEKKEQVALIAELLLEKEVLHQDDL-----TRVLGDRPFKAAELTNYDLFKQGFQ 372
             +++   +E   LIAE LL+ E L    +     T  + +   + +   +YD  K    
Sbjct: 590 AAEIIQSNRETHKLIAEALLKYETLDSTQIKALYETGKMPEAVEEESHALSYDEVKSKMN 649

Query: 371 DEE 363
           DE+
Sbjct: 650 DEK 652

to top

>FTSH_GUITH (O78516) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 631

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFP-QREDGF-----EMNKPYSNQTASIIDTEVREWVAKA 546
           T M    V  +G S+ +G LS   Q  D F       +  YS   AS ID +VR  +   
Sbjct: 517 TSMARQMVTRFGMSN-IGPLSLESQNSDPFLGRTMGSSSQYSEDIASRIDMQVRAIIQHC 575

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGD 429
           +  TV ++ + +  +  + +LL+EKE +  D+  +++GD
Sbjct: 576 HTETVQIIKDNRVVIDKLVDLLIEKETIDGDEFRQIVGD 614

to top

>YME1_SCHMA (P46508) Protein YME1 homolog (EC 3.4.24.-)|
          Length = 662

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTVD 528
           T +    V  +GFS K+G    P  +D     +     T  +ID EV + +  +  R   
Sbjct: 508 TILAQNMVKRFGFSSKIGPRVIPDTQD-----EQLGEATRDLIDKEVDQLLNDSLTRVRT 562

Query: 527 LLTEKKEQVALIAELLLEKEVLHQDDLTRVLGD--RPFKAAELTNYD--LFKQGFQDEEG 360
           LL+ + +Q  L+AE LL  E L +D++  VL    +P K   +T+    L  Q       
Sbjct: 563 LLSSQSKQHKLLAEALLHFETLTKDEVLAVLAGKMKPPKTQSVTSKSTTLLPQ------- 615

Query: 359 KTAEPTKDTEVPDDDGSAVLPNVV 288
               P+  TE+P    S ++ +VV
Sbjct: 616 --LGPSTSTEIPRMIVSLIIVHVV 637

to top

>FTSH_SHIFL (P0AAI4) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMN------KPYSNQTASIIDTEVREWVAKA 546
           T +    V  +GFS+K+G L + + E    +       K  S++TA IID EV+  + + 
Sbjct: 497 TNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERN 556

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDR 426
           Y R   LLT+  + +  + + L++ E +    +  ++  R
Sbjct: 557 YNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARR 596

to top

>FTSH_ECOLI (P0AAI3) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMN------KPYSNQTASIIDTEVREWVAKA 546
           T +    V  +GFS+K+G L + + E    +       K  S++TA IID EV+  + + 
Sbjct: 497 TNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERN 556

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDR 426
           Y R   LLT+  + +  + + L++ E +    +  ++  R
Sbjct: 557 YNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARR 596

to top

>FTSH_ECO57 (Q8X9L0) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMN------KPYSNQTASIIDTEVREWVAKA 546
           T +    V  +GFS+K+G L + + E    +       K  S++TA IID EV+  + + 
Sbjct: 497 TNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERN 556

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDR 426
           Y R   LLT+  + +  + + L++ E +    +  ++  R
Sbjct: 557 YNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARR 596

to top

>FTSH_PORPU (P51327) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 628

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQRED------GFEMNKPYSNQTASIIDTEVREWVAKA 546
           T M    V  +G S K+G LS   +        G      YS++ A+ ID +VRE V++ 
Sbjct: 517 TSMARQMVTRFGMS-KIGPLSLESQGSDPFLGRGMGGGSEYSDEVATNIDKQVREIVSEC 575

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNY 396
           YK    ++ + +  +  + +LL+EKE +  ++   ++  + + A    NY
Sbjct: 576 YKEAKKIVKDNRVVMDRLVDLLIEKETIEGNEFRHIV--KEYTAIPEKNY 623

to top

>FTSH_BUCBP (Q89AF2) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 610

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEM------NKPYSNQTASIIDTEVREWVAKA 546
           T +    V  +GFS K+G L + + E    +      +K  S++TA IID EV+  V K 
Sbjct: 497 TNLARNMVTQWGFSKKLGPLLYSEEEGEIFLGRTVTKSKHMSDETARIIDEEVKLLVEKN 556

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYD 393
           Y R   +L E  + +  + + L++ E ++   +  ++  +  +++ +   D
Sbjct: 557 YNRAKKILEENLDILHAMKDALIKYETINSRQIDDLMKRKSIQSSNICTDD 607

to top

>FTSH_SALTY (P63343) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMN------KPYSNQTASIIDTEVREWVAKA 546
           T +    V  +GFS+K+G L + + E    +       K  S++TA IID EV+  + + 
Sbjct: 497 TNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERN 556

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDR 426
           Y R   +LT+  + +  + + L++ E +    +  ++  R
Sbjct: 557 YNRARQILTDNMDILHAMKDALMKYETIDAPQIDDLMARR 596

to top

>FTSH_SALTI (P63344) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMN------KPYSNQTASIIDTEVREWVAKA 546
           T +    V  +GFS+K+G L + + E    +       K  S++TA IID EV+  + + 
Sbjct: 497 TNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERN 556

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDR 426
           Y R   +LT+  + +  + + L++ E +    +  ++  R
Sbjct: 557 YNRARQILTDNMDILHAMKDALMKYETIDAPQIDDLMARR 596

to top

>YME1_YEAST (P32795) Protein YME1 (EC 3.4.24.-) (TAT-binding homolog 11) (OSD1|
           protein)
          Length = 747

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
 Frame = -3

Query: 692 AQVAVYGFSDKVGLLSFPQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTVDLLTEK 513
           A V  YG SD VG ++  +  +       +SN+   I D EV E +  + +R   LLT+K
Sbjct: 628 AMVTQYGMSDDVGPVNLSENWES------WSNKIRDIADNEVIELLKDSEERARRLLTKK 681

Query: 512 KEQVALIAELLLEKEVLHQDDLTRVL-GDRPFKAAELTN 399
             ++  +A+ L+E E L   ++ +V  G++  K    TN
Sbjct: 682 NVELHRLAQGLIEYETLDAHEIEQVCKGEKLDKLKTSTN 720

to top

>FTSH_MYCGE (P47695) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 702

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMN-KPYSNQTASIIDTEVREWVAKAYKRTV 531
           T +  A V   G S K+G + +   +     N K YS QTA  ID E+   + + YK+  
Sbjct: 577 TNIARAMVTQLGMS-KLGQVQYVPSQGTLPSNVKLYSEQTAKDIDNEINFIIEEQYKKAK 635

Query: 530 DLLTEKKEQVALIAELLLEKEVLHQDDL 447
            ++   ++++ L+ E LL  E + + D+
Sbjct: 636 TIIKSNRKELELLVEALLIAETILKSDI 663

to top

>FTSH_HELPY (P71408) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 632

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 20/98 (20%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQRED-----GFEMNKPYSNQTASIIDTEVREWVAKAY 543
           T +    V+ YG S   GL+   ++ +     G+  ++ +S +TA  +D  ++  + + Y
Sbjct: 516 TDIIKGMVSYYGMSSVSGLMVLEKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERY 575

Query: 542 KRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGD 429
           K     L++ +E + ++ + L +KEV+  + +  ++ +
Sbjct: 576 KHVKQTLSDYREAIEIMVKELFDKEVITGERVREIISE 613

to top

>FTSH_ODOSI (P49825) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 644

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDG-------FEMNKPYSNQTASIIDTEVREWVAK 549
           T +    V  +G S+ +G L+      G             Y+   A  ID EVR+ +  
Sbjct: 530 TNLARQMVTRFGMSN-IGPLALEDESTGQVFLGGNMASGSEYAENIADRIDDEVRKIITY 588

Query: 548 AYKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVL 435
            Y++ ++++ + +  + LI E LL+KE +  D+   +L
Sbjct: 589 CYEKAIEIVLDNRVVIDLIVEKLLDKETMDGDEFRELL 626

to top

>FTSH_BUCAP (Q8K9G8) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 613

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMN------KPYSNQTASIIDTEVREWVAKA 546
           T +    V  +GFSDK+G L + + E    +       K  S++TA IID EV+  +   
Sbjct: 497 TNLARNMVTQWGFSDKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDEEVKLLIEVN 556

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEV---LHQDDL 447
           Y R   +L E  + +  + + L++ E    L  DDL
Sbjct: 557 YNRARKILNENLDILHAMKDALIKYETIDSLQIDDL 592

to top

>FTSH_BUCAI (P57462) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 611

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMN------KPYSNQTASIIDTEVREWVAKA 546
           T +    V  +GFS+K+G L + + E    +       K  S++TA IID EV+  +   
Sbjct: 497 TSLAKNMVTQWGFSEKLGPLLYAEEEGEIFLGRSVAKAKHMSDETARIIDEEVKLLIEIN 556

Query: 545 YKRTVDLLTEKKEQVALIAELLLEKEVLHQ---DDLTR 441
           Y R  ++L E  + +  + E L++ E +     DDL +
Sbjct: 557 YSRARNILNENIDILHAMKEALIKYETIDAFQIDDLMK 594

to top

>FTSH_MYCPN (P75120) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 709

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSF-PQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTV 531
           T +  A V   G S K+G + + P +       K +S QTA  ID E+   + + YK+  
Sbjct: 574 TNIARAMVTQLGMS-KLGQVQYVPSQGTVPPGTKLFSEQTAKDIDFEINAIIEEQYKKAR 632

Query: 530 DLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTA 351
            ++   ++++ L+ E LL  E + + D+   + +      E+      +Q  Q  E K A
Sbjct: 633 TIIKTNRKELELLVEALLIAETILKSDID-YIHEHTKLPPEILAQKQEQQAKQKAEAKEA 691

Query: 350 EPTKDTE 330
           +  K TE
Sbjct: 692 KLNKKTE 698

to top

>FTSH_HELFE (O32617) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 638

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQRED-----GFEMNKPYSNQTASIIDTEVREWVAKAY 543
           T +    V+ YG SD  GL+   ++ +     GF   + +S + A  +D+ ++  + + Y
Sbjct: 522 TDIIKGMVSYYGMSDVSGLMVLEKQRNSFLGGGFGSGREFSEKMAEEMDSFIKNLLEERY 581

Query: 542 KRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGD 429
                 L++ K+ + ++   L EKEV+  + +  ++ +
Sbjct: 582 VHVKQTLSDYKDAIEVMVNELFEKEVITGERVREIISE 619

to top

>YMEL1_RAT (Q925S8) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1) (Meg-4)
          Length = 715

 Score = 37.0 bits (84), Expect = 0.059
 Identities = 24/91 (26%), Positives = 45/91 (49%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTVD 528
           TK+    V  +G S+K+G++++             S +T S I+ E+R  + ++Y+R   
Sbjct: 624 TKIAKRMVTKFGMSEKLGVMTYSD-------TGKLSPETQSAIEQEIRILLRESYERAKH 676

Query: 527 LLTEKKEQVALIAELLLEKEVLHQDDLTRVL 435
           +L    ++   +AE LL  E L   ++  VL
Sbjct: 677 ILKTHAKEHKNLAEALLTYETLDAKEIQIVL 707

to top

>YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1)
          Length = 715

 Score = 37.0 bits (84), Expect = 0.059
 Identities = 24/91 (26%), Positives = 45/91 (49%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTVD 528
           TK+    V  +G S+K+G++++             S +T S I+ E+R  + ++Y+R   
Sbjct: 624 TKIAKRMVTKFGMSEKLGVMTYSD-------TGKLSPETQSAIEQEIRILLRESYERAKH 676

Query: 527 LLTEKKEQVALIAELLLEKEVLHQDDLTRVL 435
           +L    ++   +AE LL  E L   ++  VL
Sbjct: 677 ILKTHAKEHKNLAEALLTYETLDAKEIQIVL 707

to top

>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
 Frame = -2

Query: 558 GCQGLQKNS*PVNGEEGTSSSYRGV--AAREGGPPPGRSDQGIRRPPLQGSRA---NKL* 394
           G +G  +   PV+   G   S R    AAR+ GP PG    G  +PPL   RA   N+  
Sbjct: 229 GGRGRARTPGPVHSAAGGPGSRRRSPGAARDPGPEPGEERGGGGKPPLGSPRATDGNR-- 286

Query: 393 PLQAGVPGRRGQDRRAHQGHRG 328
              AGVP R G+      G RG
Sbjct: 287 DPGAGVPARPGRRMGGSSGGRG 308

to top

>YMEL1_HUMAN (Q96TA2) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1) (Meg-4) (Presenilin-associated metalloprotease)
           (PAMP)
          Length = 773

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 24/91 (26%), Positives = 44/91 (48%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTVD 528
           TK+    V  +G S+K+G++++             S +T S I+ E+R  +  +Y+R   
Sbjct: 682 TKIAKRMVTKFGMSEKLGVMTYSD-------TGKLSPETQSAIEQEIRILLRDSYERAKH 734

Query: 527 LLTEKKEQVALIAELLLEKEVLHQDDLTRVL 435
           +L    ++   +AE LL  E L   ++  VL
Sbjct: 735 ILKTHAKEHKNLAEALLTYETLDAKEIQIVL 765

to top

>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD6) (CHD-6) (Radiation-induced
            gene B protein)
          Length = 2715

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +1

Query: 22   KTFGDANTSSEHEPRPAAHRTEQQGQASCGKPSASLPANK 141
            KT GD N +S  EP P+  R E  G  +C +PSA LPA +
Sbjct: 2659 KTKGD-NPNSHPEPAPSCER-EPSGDENCAEPSAPLPAER 2696

to top

>ATRX_DROME (Q9GQN5) Transcriptional regulator ATRX homolog (EC 3.6.1.-)|
           (ATP-dependent helicase XNP) (X-linked nuclear protein)
           (dXNP) (d-xnp)
          Length = 1311

 Score = 33.5 bits (75), Expect = 0.65
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 391 SSSRGSRTKRARPQSPPRTPRCLMTMDRLCSP 296
           SS R SR   +R +SPPR  RC++ + R+  P
Sbjct: 224 SSERSSRASSSRAESPPRPKRCVVRLKRVSLP 255

to top

>DPO3A_MYCTU (P63977) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1184

 Score = 33.5 bits (75), Expect = 0.65
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = -3

Query: 467  VLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAEPTKDTEVPDDD 315
            ++H D +  VLG +  KA  L  +DLF  G  D+   TA+P    +VPDD+
Sbjct: 926  LVHSDAVDSVLGTK--KAEALGQFDLF--GSNDDGTGTADPVFTIKVPDDE 972

to top

>DPO3A_MYCBO (P63978) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1184

 Score = 33.5 bits (75), Expect = 0.65
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = -3

Query: 467  VLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAEPTKDTEVPDDD 315
            ++H D +  VLG +  KA  L  +DLF  G  D+   TA+P    +VPDD+
Sbjct: 926  LVHSDAVDSVLGTK--KAEALGQFDLF--GSNDDGTGTADPVFTIKVPDDE 972

to top

>YQFW_BACSU (P54480) Putative nucleotidase yqfW (EC 3.1.3.-)|
          Length = 193

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
 Frame = -3

Query: 605 YSNQTASIIDTEVREWVAKAYKRTVDLLTEKKEQVALIAELL---------LEKEVLHQD 453
           + NQ  +II  E    +A+  K+++DLL E+ + + + A             +++ +H D
Sbjct: 54  WMNQNEAIIYKEAL--LAQHAKQSLDLLKEEHKLIYITARRTHLTDITYEWFDRQNIHYD 111

Query: 452 DLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAEPTKDTEVP 324
            +  V G    +A +  N DLF   F+D  G      K+  +P
Sbjct: 112 HIELVGGHHKVEAVKNHNIDLF---FEDHHGNAMMIAKEAGIP 151

to top

>HCN1_HUMAN (O60741) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 1 (Brain cyclic nucleotide
           gated channel 1) (BCNG-1)
          Length = 890

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 427 APSRQPS*QTMTS-SSRGSRTKRARPQSPPRTPRCLMTMDRLCSPTSSCRRRNPARRLHS 251
           AP   P   T+ S SS  + T R R QSPP      ++   L SP+ S +   P+  L  
Sbjct: 637 APINYPQMTTLNSTSSTTTPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTPQPSAILSP 696

Query: 250 CTW 242
           C++
Sbjct: 697 CSY 699

to top

>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 525 VNGEEGTSSSYRGVAAREG--GPPPGRSDQGIRRPPLQGSRANKL*PLQAGVPGRRGQ 358
           + G++G     RG A   G  GPP  +  +GI +P   G       P Q G+PG +GQ
Sbjct: 233 LKGDQGVPGE-RGAAGPSGPQGPPGEQGPEGIGKPGAPGI------PGQPGIPGMKGQ 283

to top

>COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)|
          Length = 317

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 489 GVAAREGGPPPGRSDQGIRRPPLQGSRANKL*PLQAGVPGRRGQDRRAHQGHRG 328
           G A   G P PG +     RP +QG       P + G+PG +G+     QG RG
Sbjct: 150 GAAGARGEPGPGGAPGFPGRPGVQGP------PGERGLPGEKGERGIGSQGPRG 197

to top

>SETB1_HUMAN (Q15047) Histone-lysine N-methyltransferase, H3 lysine-9 specific 4|
           (EC 2.1.1.43) (Histone H3-K9 methyltransferase 4)
           (H3-K9-HMTase 4) (SET domain bifurcated 1)
           (ERG-associated protein with SET domain) (ESET)
          Length = 1291

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
 Frame = -3

Query: 572 EVREWVAKAYKRTVDLLTEKKEQVALIAELLLEKE--VLHQDDLTRVLGDRPFKAAELTN 399
           E+R ++ +  ++ +D + ++K+Q+A +   +++KE  V H D L             L  
Sbjct: 39  ELRHFIDEELEK-MDCVQQRKKQLAELETWVIQKESEVAHVDQLFDDASRAVTNCESLVK 97

Query: 398 YDLFKQGFQ----DEEGKTAEPTKDTEVPDDD 315
               K G Q      E +++ PT+  E+PD+D
Sbjct: 98  DFYSKLGLQYRDSSSEDESSRPTEIIEIPDED 129

to top

>ASIP_CANFA (Q5UK76) Agouti signaling protein precursor (ASP) (Agouti switch|
           protein)
          Length = 131

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 421 SRQPS*QTMTSSSRGSRTKRARPQSPPRTPRCLMTMDRLCSPTSSC 284
           SR+ + +  +S  + S    ARP+ PP TP C+ T +   SP  +C
Sbjct: 62  SRKEAEKKRSSKKKASMKNVARPRPPPPTP-CVATRNSCKSPAPAC 106

to top

>VRK2_MOUSE (Q8BN21) Serine/threonine-protein kinase VRK2 (EC 2.7.11.1)|
           (Vaccinia-related kinase 2)
          Length = 503

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
 Frame = -1

Query: 403 QTMTSSSRGSRTKR--------ARPQSPPRTPRCLMTMDRLCSPTSSCRRRNPARRLHSC 248
           Q+  ++   SRT++        +  QS  +TP  +      C P   C RR+P R+  S 
Sbjct: 384 QSRPAAPENSRTRKIHEYSDIFSEMQSLQQTPSYMSFQGSYCKPYLDCTRRDPIRKPRSL 443

Query: 247 TWHAHHP 227
             + H P
Sbjct: 444 PRYRHTP 450

to top

>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3|
           homolog (Histone-lysine N-methyltransferase, H3 lysine-4
           specific MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 20/73 (27%), Positives = 38/73 (52%)
 Frame = -3

Query: 665 DKVGLLSFPQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTVDLLTEKKEQVALIAE 486
           D VGL++    ++  +MN   +N+ A  +DTE  E ++K      +   E + +V    E
Sbjct: 595 DTVGLITSESSDN--KMNPDLANEIAHEVDTEKTEMLSKGRHVCEEDQNEDRMEVTENIE 652

Query: 485 LLLEKEVLHQDDL 447
           +L  + ++ Q+DL
Sbjct: 653 VLPHQTIVPQEDL 665

to top

>ZN436_PONPY (Q5R5Y7) Zinc finger protein 436|
          Length = 470

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
 Frame = -3

Query: 641 PQREDGFEMNKPYSNQTASIIDTEVREWVAKAYKRTVDLLTEKKEQVALIAELLLE--KE 468
           P+ E+GFE       Q     D    EWV+   ++  DLL  K+    +   +     K 
Sbjct: 90  PESEEGFESGDRSERQWG---DLTAEEWVSYPLQQVTDLLVHKEVHTGIRYHICSHCGKA 146

Query: 467 VLHQDDLTR----VLGDRPFKAAE 408
                DL R      GDRP+K  E
Sbjct: 147 FSQISDLNRHQKTHTGDRPYKCYE 170

to top

>MRE11_ARATH (Q9XGM2) Double-strand break repair protein MRE11|
          Length = 720

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -3

Query: 500 ALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAEPTKDTEVPD 321
           AL+AE  L+ E+L  +DL   L +   K  +L  Y   +   Q+  GK A+ +   +  +
Sbjct: 428 ALVAESNLKMEILPVNDLDVALHNFVNKDDKLAFYSCVQYNLQETRGKLAKDSDAKKFEE 487

Query: 320 DD 315
           DD
Sbjct: 488 DD 489

to top

>HCN1_RABIT (Q9MZS1) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 1 (rbHCN1)
          Length = 822

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 427 APSRQPS*QTMTS-SSRGSRTKRARPQSPPRTPRCLMTMDRLCSPTSSCRRRNPARRLHS 251
           AP   P    + S SS  + T R R QSPP      ++   L SP+ S +   P+  L  
Sbjct: 573 APISYPQMTALNSTSSTATPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTPQPSAILSP 632

Query: 250 CTW 242
           C++
Sbjct: 633 CSY 635

to top

>SECA_ARATH (Q9SYI0) Preprotein translocase secA subunit, chloroplast precursor|
          Length = 1021

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
 Frame = -3

Query: 656 GLLS--FPQREDGFEMNKPYSNQTASI--IDTEVREWVAKAYKRTVDLLTEKKEQVALIA 489
           GLLS  F   ++G    + Y++  AS+  ++TE+        +   D L ++ ++   + 
Sbjct: 76  GLLSGIFKGSDNGESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMD 135

Query: 488 ELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFK---QGFQDEEGKT 354
            LL E   + ++   RVLG RPF    +    L K      +  EGKT
Sbjct: 136 SLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKT 183

to top

>FTSH_CYACA (O19922) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 614

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = -3

Query: 602 SNQTASIIDTEVREWVAKAYKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDR 426
           S +  + +D EVR  +   Y +   +L++ ++ +  +   L+EKE +   +  R++ +R
Sbjct: 555 SEEMVAKVDLEVRSILKDCYIQARTILSQNRKLIDRVVNELVEKETIEAKEFMRIVEER 613

to top

>VGLE_PRVRI (P08354) Glycoprotein GI precursor|
          Length = 577

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 343 PRTPRCLMTMDRLCSPTSSCRRRNPARRLH-SCT 245
           PR P CL  +D  CS TS  R    ARR + SC+
Sbjct: 287 PRAPECLRPVDPACSFTSPARAALVARRAYASCS 320

to top

>FTSH_MYCPU (Q98PE4) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 725

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
 Frame = -3

Query: 707 TKMTYAQVAVYGFSDKVGLLSFPQREDGFEMNKPYSNQT-----ASIIDTEVREWVAKAY 543
           TK+    V  +G S  +G + + +  +   + + YS  T     A  ID E+R+ ++ + 
Sbjct: 557 TKIARKMVTEWGMS-ALGPIKYEEDTENPFLGRDYSKGTFGSKMAHEIDLEIRKIISASE 615

Query: 542 KRTVDLLTEKKEQVALIAELLLEKEVLHQDDL 447
           +  +  + +  E + LI + LLE E +  +++
Sbjct: 616 EIAIKAIEQNLELLELIKDSLLENETIVAEEI 647

to top

>SETB1_MOUSE (O88974) Histone-lysine N-methyltransferase, H3 lysine-9 specific 4|
           (EC 2.1.1.43) (Histone H3-K9 methyltransferase 4)
           (H3-K9-HMTase 4) (SET domain bifurcated 1)
           (ERG-associated protein with SET domain) (ESET)
          Length = 1307

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
 Frame = -3

Query: 572 EVREWVAKAYKRTVDLLTEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAA--ELTN 399
           E+R+++ +  ++ +D + ++K+Q+A +   +L+KE     ++  V  DR F  A  E+TN
Sbjct: 39  ELRQYIDEELEK-MDCIQQRKKQLAELETWVLQKE----SEVAYV--DRLFDDASREVTN 91

Query: 398 YDLFKQGFQDE----------EGKTAEPTKDTEVPDDD 315
            +   + F  +          E + + PT+  E+PD+D
Sbjct: 92  CESLVKDFYSKLGLQYHDSSSEDEASRPTEIIEIPDED 129

to top

>RBP1_RAT (Q62796) RalA-binding protein 1 (RalBP1) (Ral-interacting protein|
           1) (Cytocentrin) (Dinitrophenyl S-glutathione ATPase)
           (DNP-SG ATPase)
          Length = 646

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 22/75 (29%), Positives = 38/75 (50%)
 Frame = -3

Query: 521 TEKKEQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAEPT 342
           ++KKE+   I E    KE  H+++  +    +  K  + T  D+ KQ    E+ K  +PT
Sbjct: 117 SKKKEKDFKIKEK--PKEEKHKEEKHKEEKHKEKKCKDFTAADVVKQW--KEKKKKKKPT 172

Query: 341 KDTEVPDDDGSAVLP 297
           ++ EVP  D  ++ P
Sbjct: 173 QEPEVPQTDAPSLRP 187

to top

>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor|
          Length = 1775

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
 Frame = -2

Query: 567 EGMGCQGLQKNS*PVN--GEEGTS--SSYRGVAAREGGP-PPG----RSDQGIRRPPLQG 415
           +G G  G   N  P    GE+GT+  +  +G     G P PPG    + D G+    +QG
Sbjct: 437 DGAGLPGRPGNEGPPGKKGEKGTAGLNGPKGSIGPIGHPGPPGPEGQKGDAGLPGYGIQG 496

Query: 414 SRANKL*PLQAGVPGRRGQDRRAHQGHRGA 325
           S+ +   P   G+ G +G+  R  +G+ GA
Sbjct: 497 SKGDAGIPGYPGLKGSKGE--RGFKGNAGA 524

to top

>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-4) (Irregular xylem protein 5)
           (AtIRX5)
          Length = 1049

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 662 KVGLLSFPQREDGFEMNKPYSNQTASIIDTEVR 564
           K+  + FPQR DG ++N  Y+N+     D  +R
Sbjct: 527 KLCYVQFPQRFDGIDLNDRYANRNIVFFDINMR 559

to top

>DPOLN_HUMAN (Q7Z5Q5) DNA polymerase nu (EC 2.7.7.7)|
          Length = 900

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -3

Query: 620 EMNKPYSNQTASIIDTEVREWVAKAYKRTVDLLTEKKE 507
           ++N  Y N + +I++  VRE +   Y+ T+DL ++ K+
Sbjct: 380 KVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKD 417

to top

>F112A_BOVIN (Q3T026) Protein FAM112A|
          Length = 169

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 343 PRTPRCLMTMDRLCSPTSSCRRRNP--ARRLHSCTWHAHHPI 224
           P  P   + + R     +SCRR+NP  A+++ SC ++A H +
Sbjct: 10  PYNPHHRIPLSRFQYHLASCRRKNPKKAKKMASCKYNACHVV 51

to top

>CAD23_HUMAN (Q9H251) Cadherin-23 precursor (Otocadherin)|
          Length = 3354

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 140  NKTGMTDLDEGADLYSFYFLCCNNKTRIYRMMSMPCTAV 256
            N TG  D DEG +   +YF+   N+ + + +    C  V
Sbjct: 2749 NVTGAVDADEGPNAIVYYFIAAGNEEKNFHLQPDGCLLV 2787

to top

>GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 815

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = -1

Query: 373 RTKRARPQSPPRTPRCLMTMDRLCSPTSSCRRRNPARRLHSCTWHAHH 230
           RT    P+S   TP  +    R CS T SCRRR+      SC   A H
Sbjct: 664 RTPSTTPRSWCSTPTRMEPCGRRCSTTPSCRRRS----TWSCRLCAEH 707


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,691,990
Number of Sequences: 219361
Number of extensions: 2180038
Number of successful extensions: 6823
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 6261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6784
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result