ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome... 287 2e-74
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 287 2e-74
3dbj|AK069936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 287 2e-74
4gb|AY106159.1| Zea mays PCO146144 mRNA sequence 168 2e-38
5ref|NM_190557.1| Oryza sativa (japonica cultivar-group), predic... 133 9e-28
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 133 9e-28
7dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic D... 133 9e-28
8dbj|AK100245.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 9e-28
9ref|NM_179798.1| Arabidopsis thaliana FTSH3; ATP-dependent pepti... 54 6e-04
10gb|AY063914.1| Arabidopsis thaliana putative AAA-type ATPase (At... 54 6e-04
11gb|AC005315.3| Arabidopsis thaliana chromosome 2 clone T9I4 map ... 54 6e-04
12gb|BT002743.1| Arabidopsis thaliana clone C104832 putative AAA-t... 54 6e-04
13gb|AC022699.11| Mus musculus chromosome 10, clone RP23-107I8, co... 44 0.62
14gb|AC007953.21| Homo sapiens 3 BAC RP11-2L8 (Roswell Park Cancer... 44 0.62
15gb|AC103549.6| Homo sapiens 3 BAC RP11-795G18 (Roswell Park Canc... 44 0.62
16gb|AC155940.6| Mus musculus 10 BAC RP24-94O5 (Roswell Park Cance... 44 0.62
17gb|AC166316.2| Mus musculus chromosome 19, clone RP23-466L5, com... 42 2.5
18gb|AC120843.11| Mus musculus chromosome 12, clone RP23-71C5, com... 42 2.5
19ref|XM_751952.1| Ustilago maydis 521 hypothetical protein (UM008... 42 2.5
20emb|AL512286.6| Human DNA sequence from clone RP11-45J1 on chrom... 42 2.5
21emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 o... 42 2.5
22dbj|AB234511.1| Uncultured Clostridiales bacterium gene for 16S ... 42 2.5
23gb|AC159982.4| Mus musculus chromosome 19, clone RP24-383P9, com... 42 2.5
24gb|AC159202.2| Mus musculus BAC clone RP23-297L21 from chromosom... 42 2.5
25gb|AC122119.11| Mus musculus chromosome 19, clone RP24-252F4, co... 42 2.5
26emb|AL671875.12| Mouse DNA sequence from clone RP23-296M12 on ch... 42 2.5
27gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, com... 40 9.7
28gb|AC147072.3| Pan troglodytes BAC clone RP43-168P22 from 7, com... 40 9.7
29gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, comp... 40 9.7
30gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome... 40 9.7
31gb|AC122249.4| Mus musculus BAC clone RP23-164F15 from 1, comple... 40 9.7
32gb|AC073346.12| Homo sapiens BAC clone RP11-736E3 from 7, comple... 40 9.7
33emb|X54253.1|MTAS Ascaris suum complete mitochondrial genome 40 9.7
34emb|CR376736.5| Zebrafish DNA sequence from clone DKEYP-86G11 in... 40 9.7
35gb|AC101941.11| Mus musculus chromosome 7, clone RP24-112F21, co... 40 9.7
36dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 9.7
37gb|AC058822.6| Homo sapiens BAC clone RP11-809N18 from 4, comple... 40 9.7
38ref|NM_077513.3| Caenorhabditis elegans Heavy chain, Unconventio... 40 9.7
39gb|AC177808.2| Pan troglodytes BAC clone CH251-703A9 from chromo... 40 9.7
40gb|AC096866.2| Takifugu rubripes clone 247M18, complete sequence 40 9.7
41gb|AC092870.2| Takifugu rubripes clone 228A21, complete sequence 40 9.7
42gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 9.7
43emb|Z49661.1|SCYJR161C S.cerevisiae chromosome X reading frame O... 40 9.7
44emb|Z49660.1|SCYJR160C S.cerevisiae chromosome X reading frame O... 40 9.7
45emb|Z74296.1|SCYDL248W S.cerevisiae chromosome IV reading frame ... 40 9.7
46emb|Z74295.1|SCYDL247W S.cerevisiae chromosome IV reading frame ... 40 9.7
47emb|Z66563.1|CEF46C3 Caenorhabditis elegans Cosmid F46C3, comple... 40 9.7
48emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on ch... 40 9.7
49gb|AC169792.2| Rhesus Macaque BAC CH250-117K11 (Children's Hosp... 40 9.7 
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
             complete sequence
          Length = 131860

 Score =  287 bits (145), Expect = 2e-74
 Identities = 292/341 (85%)
 Strand = Plus / Minus

                                                                         
Query: 364   tcttcgtcctggaacccctgcttgaagaggtcatagtttgttagctcggctgccttgaag 423
             ||||| ||||||||||| |||||||||||||| ||||| ||| |||||| ||||||||| 
Sbjct: 80323 tcttcatcctggaacccttgcttgaagaggtcgtagttagttggctcggatgccttgaaa 80264

                                                                         
Query: 424   gggcggtctcctaataccctggtcagatcgtcctggtggaggacctccttctcgagcagc 483
             || || ||||||||||||||   || ||||||||||||||||||||||||||| ||||||
Sbjct: 80263 ggccgttctcctaataccctaaccaaatcgtcctggtggaggacctccttctcaagcagc 80204

                                                                         
Query: 484   aactccgcgataagagctacttgttccttcttctccgttaacaggtcaactgttcttttg 543
             |  || |||||    || ||||| ||||| | ||| |||| ||| || |||||| |||||
Sbjct: 80203 atttcagcgattttggcgacttgctccttgtgctcagttatcagttccactgtttttttg 80144

                                                                         
Query: 544   taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 603
             || |||||| ||||||||||||||||||||   |||||||||||||| ||||||||||||
Sbjct: 80143 tacgccttgccaacccattccctcacctcatcgtcgatgatggatgctgtttggttgctg 80084

                                                                         
Query: 604   taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 663
             ||||| ||| |||||||||||||||| |||||||||||||| || ||||| |||||||| 
Sbjct: 80083 taaggtttggtcatttcaaagccatcgtccctctgagggaaggacagaagcccaaccttt 80024

                                                      
Query: 664   tcgctgaagccatacacagcaacttgcgcgtatgtcatttt 704
             |||||||| || || |||||||| ||||| || ||||||||
Sbjct: 80023 tcgctgaaaccgtatacagcaacctgcgcataggtcatttt 79983



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                
Query: 194   ttcttatgctgcaacaacaaaaccagaatctatcg 228
             |||||||||||||||||| |||| |||||||||||
Sbjct: 80481 ttcttatgctgcaacaac-aaacaagaatctatcg 80448
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  287 bits (145), Expect = 2e-74
 Identities = 292/341 (85%)
 Strand = Plus / Minus

                                                                            
Query: 364      tcttcgtcctggaacccctgcttgaagaggtcatagtttgttagctcggctgccttgaag 423
                ||||| ||||||||||| |||||||||||||| ||||| ||| |||||| ||||||||| 
Sbjct: 22378688 tcttcatcctggaacccttgcttgaagaggtcgtagttagttggctcggatgccttgaaa 22378629

                                                                            
Query: 424      gggcggtctcctaataccctggtcagatcgtcctggtggaggacctccttctcgagcagc 483
                || || ||||||||||||||   || ||||||||||||||||||||||||||| ||||||
Sbjct: 22378628 ggccgttctcctaataccctaaccaaatcgtcctggtggaggacctccttctcaagcagc 22378569

                                                                            
Query: 484      aactccgcgataagagctacttgttccttcttctccgttaacaggtcaactgttcttttg 543
                |  || |||||    || ||||| ||||| | ||| |||| ||| || |||||| |||||
Sbjct: 22378568 atttcagcgattttggcgacttgctccttgtgctcagttatcagttccactgtttttttg 22378509

                                                                            
Query: 544      taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 603
                || |||||| ||||||||||||||||||||   |||||||||||||| ||||||||||||
Sbjct: 22378508 tacgccttgccaacccattccctcacctcatcgtcgatgatggatgctgtttggttgctg 22378449

                                                                            
Query: 604      taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 663
                ||||| ||| |||||||||||||||| |||||||||||||| || ||||| |||||||| 
Sbjct: 22378448 taaggtttggtcatttcaaagccatcgtccctctgagggaaggacagaagcccaaccttt 22378389

                                                         
Query: 664      tcgctgaagccatacacagcaacttgcgcgtatgtcatttt 704
                |||||||| || || |||||||| ||||| || ||||||||
Sbjct: 22378388 tcgctgaaaccgtatacagcaacctgcgcataggtcatttt 22378348



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                   
Query: 194      ttcttatgctgcaacaacaaaaccagaatctatcg 228
                |||||||||||||||||| |||| |||||||||||
Sbjct: 22378846 ttcttatgctgcaacaac-aaacaagaatctatcg 22378813
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>dbj|AK069936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039G20, full
            insert sequence
          Length = 2880

 Score =  287 bits (145), Expect = 2e-74
 Identities = 292/341 (85%)
 Strand = Plus / Minus

                                                                        
Query: 364  tcttcgtcctggaacccctgcttgaagaggtcatagtttgttagctcggctgccttgaag 423
            ||||| ||||||||||| |||||||||||||| ||||| ||| |||||| ||||||||| 
Sbjct: 2597 tcttcatcctggaacccttgcttgaagaggtcgtagttagttggctcggatgccttgaaa 2538

                                                                        
Query: 424  gggcggtctcctaataccctggtcagatcgtcctggtggaggacctccttctcgagcagc 483
            || || ||||||||||||||   || ||||||||||||||||||||||||||| ||||||
Sbjct: 2537 ggccgttctcctaataccctaaccaaatcgtcctggtggaggacctccttctcaagcagc 2478

                                                                        
Query: 484  aactccgcgataagagctacttgttccttcttctccgttaacaggtcaactgttcttttg 543
            |  || |||||    || ||||| ||||| | ||| |||| ||| || |||||| |||||
Sbjct: 2477 atttcagcgattttggcgacttgctccttgtgctcagttatcagttccactgtttttttg 2418

                                                                        
Query: 544  taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 603
            || |||||| ||||||||||||||||||||   |||||||||||||| ||||||||||||
Sbjct: 2417 tacgccttgccaacccattccctcacctcatcgtcgatgatggatgctgtttggttgctg 2358

                                                                        
Query: 604  taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 663
            ||||| ||| |||||||||||||||| |||||||||||||| || ||||| |||||||| 
Sbjct: 2357 taaggtttggtcatttcaaagccatcgtccctctgagggaaggacagaagcccaaccttt 2298

                                                     
Query: 664  tcgctgaagccatacacagcaacttgcgcgtatgtcatttt 704
            |||||||| || || |||||||| ||||| || ||||||||
Sbjct: 2297 tcgctgaaaccgtatacagcaacctgcgcataggtcatttt 2257



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                               
Query: 194  ttcttatgctgcaacaacaaaaccagaatctatcg 228
            |||||||||||||||||| |||| |||||||||||
Sbjct: 2755 ttcttatgctgcaacaac-aaacaagaatctatcg 2722
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>gb|AY106159.1| Zea mays PCO146144 mRNA sequence
          Length = 1581

 Score =  168 bits (85), Expect = 2e-38
 Identities = 259/317 (81%)
 Strand = Plus / Minus

                                                                        
Query: 388  aagaggtcatagtttgttagctcggctgccttgaaggggcggtctcctaataccctggtc 447
            |||||||| ||||| ||| ||||   ||||||||| || || ||||||| ||||||||| 
Sbjct: 1206 aagaggtcgtagttggttggctccagtgccttgaatggacgttctcctagtaccctggtt 1147

                                                                        
Query: 448  agatcgtcctggtggaggacctccttctcgagcagcaactccgcgataagagctacttgt 507
            |||||||||||||| ||||| ||||||||||||||||| || |||||  | || ||||| 
Sbjct: 1146 agatcgtcctggtgtaggacttccttctcgagcagcaattctgcgatctgtgcaacttgc 1087

                                                                        
Query: 508  tccttcttctccgttaacaggtcaactgttcttttgtaggccttggcaacccattccctc 567
            ||||| | ||| |||| ||  ||||||||| | |||||||||||| ||||||||||||  
Sbjct: 1086 tccttgtgctctgttatcaattcaactgttttcttgtaggccttgccaacccattcccgg 1027

                                                                        
Query: 568  acctcagtatcgatgatggatgcagtttggttgctgtaaggcttgttcatttcaaagcca 627
            ||||||   |||||||||||||| || || || |||||||||||| ||||||| || |||
Sbjct: 1026 acctcatcgtcgatgatggatgctgtctgattactgtaaggcttgctcatttcgaaacca 967

                                                                        
Query: 628  tcctccctctgagggaaagatagaagaccaaccttatcgctgaagccatacacagcaact 687
             | ||  |||| ||||| || ||||| |||||||| || || || |||||||| || || 
Sbjct: 966  ccatctttctgggggaaggacagaagcccaaccttttcactaaaaccatacacggcgacc 907

                             
Query: 688  tgcgcgtatgtcatttt 704
            || || |||||||||||
Sbjct: 906  tgtgcatatgtcatttt 890
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>ref|NM_190557.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2409

 Score =  133 bits (67), Expect = 9e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                        
Query: 544  taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 603
            |||||||| || |||||||||||||||||||| || ||||||||||| || ||| |||| 
Sbjct: 2159 taggccttagcgacccattccctcacctcagtgtcaatgatggatgccgtctggctgcta 2100

                                                                        
Query: 604  taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 663
            || || ||| |||| ||||| ||||||||||| ||||||||||| ||||| |||||||| 
Sbjct: 2099 tatggtttgctcatctcaaaaccatcctccctttgagggaaagaaagaaggccaaccttt 2040

                                   
Query: 664  tcgctgaagccatacacagcaac 686
            |||||||||||||| || |||||
Sbjct: 2039 tcgctgaagccatatactgcaac 2017



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 448  agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 494
            ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct: 2255 agatcatcctggtggagaacctctttctcaagcagcagctcggcgat 2209
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  133 bits (67), Expect = 9e-28
 Identities = 124/143 (86%)
 Strand = Plus / Plus

                                                                            
Query: 544      taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 603
                |||||||| || |||||||||||||||||||| || ||||||||||| || ||| |||| 
Sbjct: 36176258 taggccttagcgacccattccctcacctcagtgtcaatgatggatgccgtctggctgcta 36176317

                                                                            
Query: 604      taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 663
                || || ||| |||| ||||| ||||||||||| ||||||||||| ||||| |||||||| 
Sbjct: 36176318 tatggtttgctcatctcaaaaccatcctccctttgagggaaagaaagaaggccaaccttt 36176377

                                       
Query: 664      tcgctgaagccatacacagcaac 686
                |||||||||||||| || |||||
Sbjct: 36176378 tcgctgaagccatatactgcaac 36176400



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 448      agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 494
                ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct: 36176162 agatcatcctggtggagaacctctttctcaagcagcagctcggcgat 36176208
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>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406G08
          Length = 144233

 Score =  133 bits (67), Expect = 9e-28
 Identities = 124/143 (86%)
 Strand = Plus / Plus

                                                                         
Query: 544   taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 603
             |||||||| || |||||||||||||||||||| || ||||||||||| || ||| |||| 
Sbjct: 53271 taggccttagcgacccattccctcacctcagtgtcaatgatggatgccgtctggctgcta 53330

                                                                         
Query: 604   taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 663
             || || ||| |||| ||||| ||||||||||| ||||||||||| ||||| |||||||| 
Sbjct: 53331 tatggtttgctcatctcaaaaccatcctccctttgagggaaagaaagaaggccaaccttt 53390

                                    
Query: 664   tcgctgaagccatacacagcaac 686
             |||||||||||||| || |||||
Sbjct: 53391 tcgctgaagccatatactgcaac 53413



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 448   agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 494
             ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct: 53175 agatcatcctggtggagaacctctttctcaagcagcagctcggcgat 53221
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>dbj|AK100245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056H19, full
            insert sequence
          Length = 2766

 Score =  133 bits (67), Expect = 9e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                        
Query: 544  taggccttggcaacccattccctcacctcagtatcgatgatggatgcagtttggttgctg 603
            |||||||| || |||||||||||||||||||| || ||||||||||| || ||| |||| 
Sbjct: 2230 taggccttagcgacccattccctcacctcagtgtcaatgatggatgccgtctggctgcta 2171

                                                                        
Query: 604  taaggcttgttcatttcaaagccatcctccctctgagggaaagatagaagaccaacctta 663
            || || ||| |||| ||||| ||||||||||| ||||||||||| ||||| |||||||| 
Sbjct: 2170 tatggtttgctcatctcaaaaccatcctccctttgagggaaagaaagaaggccaaccttt 2111

                                   
Query: 664  tcgctgaagccatacacagcaac 686
            |||||||||||||| || |||||
Sbjct: 2110 tcgctgaagccatatactgcaac 2088



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 448  agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 494
            ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct: 2326 agatcatcctggtggagaacctctttctcaagcagcagctcggcgat 2280
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>ref|NM_179798.1| Arabidopsis thaliana FTSH3; ATP-dependent peptidase/ ATPase AT2G29080
            (FTSH3) mRNA, complete cds
          Length = 3000

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 655  ccaaccttatcgctgaagccatacacagcaacttgcgcgtatgtcat 701
            |||||||| || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 2337 ccaaccttgtcactgaaaccatacacagctacttgcgcgtaagtcat 2291
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>gb|AY063914.1| Arabidopsis thaliana putative AAA-type ATPase (At2g29080) mRNA,
            complete cds
          Length = 2973

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 655  ccaaccttatcgctgaagccatacacagcaacttgcgcgtatgtcat 701
            |||||||| || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 2294 ccaaccttgtcactgaaaccatacacagctacttgcgcgtaagtcat 2248
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>gb|AC005315.3| Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete
             sequence
          Length = 108393

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 655   ccaaccttatcgctgaagccatacacagcaacttgcgcgtatgtcat 701
             |||||||| || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 70026 ccaaccttgtcactgaaaccatacacagctacttgcgcgtaagtcat 70072
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>gb|BT002743.1| Arabidopsis thaliana clone C104832 putative AAA-type ATPase
            (At2g29080) mRNA, complete cds
          Length = 2461

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 655  ccaaccttatcgctgaagccatacacagcaacttgcgcgtatgtcat 701
            |||||||| || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 2051 ccaaccttgtcactgaaaccatacacagctacttgcgcgtaagtcat 2005
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>gb|AC022699.11| Mus musculus chromosome 10, clone RP23-107I8, complete sequence
          Length = 225763

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 599   tgctgtaaggcttgttcatttcaaag 624
             ||||||||||| ||||||||||||||
Sbjct: 30349 tgctgtaaggcctgttcatttcaaag 30374
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>gb|AC007953.21| Homo sapiens 3 BAC RP11-2L8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152210

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 630    ctccctctgagggaaagataga 651
              ||||||||||||||||||||||
Sbjct: 113569 ctccctctgagggaaagataga 113548
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>gb|AC103549.6| Homo sapiens 3 BAC RP11-795G18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165139

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 630    ctccctctgagggaaagataga 651
              ||||||||||||||||||||||
Sbjct: 101056 ctccctctgagggaaagataga 101077
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>gb|AC155940.6| Mus musculus 10 BAC RP24-94O5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 211515

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 599    tgctgtaaggcttgttcatttcaaag 624
              ||||||||||| ||||||||||||||
Sbjct: 155720 tgctgtaaggcctgttcatttcaaag 155745
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>gb|AC166316.2| Mus musculus chromosome 19, clone RP23-466L5, complete sequence
          Length = 185237

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 136   aataaataaaactggcatgactgat 160
             ||||||||||||||| |||||||||
Sbjct: 81606 aataaataaaactggtatgactgat 81630
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>gb|AC120843.11| Mus musculus chromosome 12, clone RP23-71C5, complete sequence
          Length = 220627

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 618    ttcaaagccatcctccctctg 638
              |||||||||||||||||||||
Sbjct: 105584 ttcaaagccatcctccctctg 105564
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>ref|XM_751952.1| Ustilago maydis 521 hypothetical protein (UM00898.1) partial mRNA
          Length = 2583

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 465  gacctccttctcgagcagcaactccgcga 493
            |||||||||||||||||||| || |||||
Sbjct: 2388 gacctccttctcgagcagcagctgcgcga 2360
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>emb|AL512286.6| Human DNA sequence from clone RP11-45J1 on chromosome X Contains a
             prefoldin 4 (PFDN4) pseudogene, the 5' end of a novel gene
             and a CpG island, complete sequence
          Length = 91875

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 611   tgttcatttcaaagccatcct 631
             |||||||||||||||||||||
Sbjct: 15711 tgttcatttcaaagccatcct 15691
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>emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 on chromosome 20p12.3-13
            Contains STS and GSSs, complete sequence
          Length = 137739

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 584  tggatgcagtttggttgctgt 604
            |||||||||||||||||||||
Sbjct: 1878 tggatgcagtttggttgctgt 1898
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>dbj|AB234511.1| Uncultured Clostridiales bacterium gene for 16S rRNA, partial
           sequence, clone: MgMjW-48
          Length = 1362

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  ggccagctgcggaaagcctag 119
           |||||||||||||||||||||
Sbjct: 195 ggccagctgcggaaagcctag 215
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>gb|AC159982.4| Mus musculus chromosome 19, clone RP24-383P9, complete sequence
          Length = 198886

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 136    aataaataaaactggcatgactgat 160
              ||||||||||||||| |||||||||
Sbjct: 126510 aataaataaaactggtatgactgat 126534
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>gb|AC159202.2| Mus musculus BAC clone RP23-297L21 from chromosome 12, complete sequence
          Length = 210589

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 618    ttcaaagccatcctccctctg 638
              |||||||||||||||||||||
Sbjct: 200216 ttcaaagccatcctccctctg 200236
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>gb|AC122119.11| Mus musculus chromosome 19, clone RP24-252F4, complete sequence
          Length = 183160

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 136   aataaataaaactggcatgactgat 160
             ||||||||||||||| |||||||||
Sbjct: 86813 aataaataaaactggtatgactgat 86789
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>emb|AL671875.12| Mouse DNA sequence from clone RP23-296M12 on chromosome X, complete
             sequence
          Length = 192292

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 178   tttatacagtttttacttctt 198
             |||||||||||||||||||||
Sbjct: 38870 tttatacagtttttacttctt 38890
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>gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, complete sequence
          Length = 209825

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 382    tgcttgaagaggtcatagtttgtt 405
              |||||| |||||||||||||||||
Sbjct: 111149 tgcttggagaggtcatagtttgtt 111172
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>gb|AC147072.3| Pan troglodytes BAC clone RP43-168P22 from 7, complete sequence
          Length = 151952

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 500    ctacttgttccttcttctcc 519
              ||||||||||||||||||||
Sbjct: 142917 ctacttgttccttcttctcc 142936
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>gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, complete sequence
          Length = 213684

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 503    cttgttccttcttctccgtt 522
              ||||||||||||||||||||
Sbjct: 137381 cttgttccttcttctccgtt 137362
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>gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome 5, complete sequence
          Length = 198245

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 503   cttgttccttcttctccgtt 522
             ||||||||||||||||||||
Sbjct: 37961 cttgttccttcttctccgtt 37942
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>gb|AC122249.4| Mus musculus BAC clone RP23-164F15 from 1, complete sequence
          Length = 207471

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 382    tgcttgaagaggtcatagtttgtt 405
              |||||| |||||||||||||||||
Sbjct: 203925 tgcttggagaggtcatagtttgtt 203948
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>gb|AC073346.12| Homo sapiens BAC clone RP11-736E3 from 7, complete sequence
          Length = 180651

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 500   ctacttgttccttcttctcc 519
             ||||||||||||||||||||
Sbjct: 33453 ctacttgttccttcttctcc 33434
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>emb|X54253.1|MTAS Ascaris suum complete mitochondrial genome
          Length = 14284

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 192  acttcttatgctgcaacaacaaaaccag 219
            ||||||||||||  ||||||||||||||
Sbjct: 4255 acttcttatgctataacaacaaaaccag 4228
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>emb|CR376736.5| Zebrafish DNA sequence from clone DKEYP-86G11 in linkage group 24,
             complete sequence
          Length = 204538

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 134   ctaataaataaaactggcatgact 157
             |||| |||||||||||||||||||
Sbjct: 56147 ctaaaaaataaaactggcatgact 56170
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>gb|AC101941.11| Mus musculus chromosome 7, clone RP24-112F21, complete sequence
          Length = 157117

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 595   tggttgctgtaaggcttgtt 614
             ||||||||||||||||||||
Sbjct: 70978 tggttgctgtaaggcttgtt 70997
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 478    agcagcaactccgcgataag 497
              ||||||||||||||||||||
Sbjct: 802604 agcagcaactccgcgataag 802623
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>gb|AC058822.6| Homo sapiens BAC clone RP11-809N18 from 4, complete sequence
          Length = 170212

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   tgccatgtacagctgtgtag 259
             ||||||||||||||||||||
Sbjct: 91013 tgccatgtacagctgtgtag 90994
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>ref|NM_077513.3| Caenorhabditis elegans Heavy chain, Unconventional Myosin family
            member (hum-4) (hum-4) mRNA, complete cds
          Length = 8759

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 500  ctacttgttccttcttctcc 519
            ||||||||||||||||||||
Sbjct: 7968 ctacttgttccttcttctcc 7987
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>gb|AC177808.2| Pan troglodytes BAC clone CH251-703A9 from chromosome unknown,
            complete sequence
          Length = 207792

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  tgccatgtacagctgtgtag 259
            ||||||||||||||||||||
Sbjct: 3022 tgccatgtacagctgtgtag 3003
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>gb|AC096866.2| Takifugu rubripes clone 247M18, complete sequence
          Length = 53580

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 611   tgttcatttcaaagccatcc 630
             ||||||||||||||||||||
Sbjct: 27543 tgttcatttcaaagccatcc 27562
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>gb|AC092870.2| Takifugu rubripes clone 228A21, complete sequence
          Length = 70231

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 611   tgttcatttcaaagccatcc 630
             ||||||||||||||||||||
Sbjct: 68375 tgttcatttcaaagccatcc 68394
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 470     ccttctcgagcagcaactccgcga 493
               ||||||||||||||| ||||||||
Sbjct: 4928606 ccttctcgagcagcagctccgcga 4928583
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>emb|Z49661.1|SCYJR161C S.cerevisiae chromosome X reading frame ORF YJR161c
          Length = 5094

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 606  aggcttgttcatttcaaagc 625
            ||||||||||||||||||||
Sbjct: 1002 aggcttgttcatttcaaagc 1021
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>emb|Z49660.1|SCYJR160C S.cerevisiae chromosome X reading frame ORF YJR160c
          Length = 5730

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 606  aggcttgttcatttcaaagc 625
            ||||||||||||||||||||
Sbjct: 3701 aggcttgttcatttcaaagc 3720
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>emb|Z74296.1|SCYDL248W S.cerevisiae chromosome IV reading frame ORF YDL248w
          Length = 5984

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 606  aggcttgttcatttcaaagc 625
            ||||||||||||||||||||
Sbjct: 4983 aggcttgttcatttcaaagc 4964
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>emb|Z74295.1|SCYDL247W S.cerevisiae chromosome IV reading frame ORF YDL247w
          Length = 5729

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 606  aggcttgttcatttcaaagc 625
            ||||||||||||||||||||
Sbjct: 2030 aggcttgttcatttcaaagc 2011
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>emb|Z66563.1|CEF46C3 Caenorhabditis elegans Cosmid F46C3, complete sequence
          Length = 29777

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 500   ctacttgttccttcttctcc 519
             ||||||||||||||||||||
Sbjct: 11078 ctacttgttccttcttctcc 11059
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>emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on chromosome 15, complete
              sequence
          Length = 240977

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 618    ttcaaagccatcctccctct 637
              ||||||||||||||||||||
Sbjct: 182948 ttcaaagccatcctccctct 182929
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>gb|AC169792.2| Rhesus Macaque  BAC CH250-117K11 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 186393

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   tgccatgtacagctgtgtag 259
             ||||||||||||||||||||
Sbjct: 20044 tgccatgtacagctgtgtag 20063


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,650,298
Number of Sequences: 3902068
Number of extensions: 6650298
Number of successful extensions: 116466
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116246
Number of HSP's gapped (non-prelim): 217
length of query: 709
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 686
effective length of database: 17,143,297,704
effective search space: 11760302224944
effective search space used: 11760302224944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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