Clone Name | rbasd18g21 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_474477.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4125 Score = 353 bits (178), Expect = 5e-94 Identities = 313/358 (87%) Strand = Plus / Minus Query: 321 tccaatcatctggaaccgttaggaaatacttggccatgaacttcctgaaccttttcttgt 380 ||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||||||| Sbjct: 4117 tccaatcgtctggaactgtcaggaaatacttggccatgaacttcctaaacctcttcttgt 4058 Query: 381 actccctgggtgaaatcaccgtcggcaactcattctttggcaccaccagagatgttttca 440 |||| ||||||| || || || || | ||||||||||||| |||| ||| ||||||| Sbjct: 4057 actctttgggtgagattactgttggtgaagcattctttggcactaccaaagaagttttca 3998 Query: 441 cccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgccaagta 500 |||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||| || Sbjct: 3997 cccacgtctccagttgcttgtcccatgtatactgccttaggtaatctatgatgccaaata 3938 Query: 501 caaactcatggttttgttcgtcgacgcccacaagtagagagtagtccataacattaactg 560 |||||||||| |||| || ||| || ||||| |||| ||||||||||||||||||| || Sbjct: 3937 caaactcatgcttttctttgtccactcccaccagtaacgagtagtccataacattaattg 3878 Query: 561 acgtgagaaaagacgtatcgttccagatcgcccgctgcaagagatgttttgttctcccac 620 | |||||||||| || ||||||||||| |||||||||||||||||||| ||||| |||| Sbjct: 3877 aagtgagaaaagctgtgtcgttccagattgcccgctgcaagagatgtttcgttcttccac 3818 Query: 621 caatatagattggggaaacacgcatatcctcgacaaagttttgatccaagtagacagt 678 ||| ||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 3817 caacatatataggggaaacacgcatatcatcgacaaagttttgatccaagtaaacagt 3760
>dbj|AK068257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148O14, full insert sequence Length = 4471 Score = 353 bits (178), Expect = 5e-94 Identities = 313/358 (87%) Strand = Plus / Minus Query: 321 tccaatcatctggaaccgttaggaaatacttggccatgaacttcctgaaccttttcttgt 380 ||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||||||| Sbjct: 4258 tccaatcgtctggaactgtcaggaaatacttggccatgaacttcctaaacctcttcttgt 4199 Query: 381 actccctgggtgaaatcaccgtcggcaactcattctttggcaccaccagagatgttttca 440 |||| ||||||| || || || || | ||||||||||||| |||| ||| ||||||| Sbjct: 4198 actctttgggtgagattactgttggtgaagcattctttggcactaccaaagaagttttca 4139 Query: 441 cccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgccaagta 500 |||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||| || Sbjct: 4138 cccacgtctccagttgcttgtcccatgtatactgccttaggtaatctatgatgccaaata 4079 Query: 501 caaactcatggttttgttcgtcgacgcccacaagtagagagtagtccataacattaactg 560 |||||||||| |||| || ||| || ||||| |||| ||||||||||||||||||| || Sbjct: 4078 caaactcatgcttttctttgtccactcccaccagtaacgagtagtccataacattaattg 4019 Query: 561 acgtgagaaaagacgtatcgttccagatcgcccgctgcaagagatgttttgttctcccac 620 | |||||||||| || ||||||||||| |||||||||||||||||||| ||||| |||| Sbjct: 4018 aagtgagaaaagctgtgtcgttccagattgcccgctgcaagagatgtttcgttcttccac 3959 Query: 621 caatatagattggggaaacacgcatatcctcgacaaagttttgatccaagtagacagt 678 ||| ||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 3958 caacatatataggggaaacacgcatatcatcgacaaagttttgatccaagtaaacagt 3901
>gb|AY104185.1| Zea mays PCO101622 mRNA sequence Length = 2045 Score = 272 bits (137), Expect = 1e-69 Identities = 278/325 (85%) Strand = Plus / Plus Query: 355 catgaacttcctgaaccttttcttgtactccctgggtgaaatcaccgtcggcaactcatt 414 |||||||||||||||||| |||||||| ||||| || ||||||||||| ||| | ||||| Sbjct: 901 catgaacttcctgaacctcttcttgtaatcccttggggaaatcaccgttggcgattcatt 960 Query: 415 ctttggcaccaccagagatgttttcacccatgtctccagttgcttgtcccatgtgtactg 474 ||| |||||||||||||| | ||||||| |||||||| |||||||||||||| ||||| Sbjct: 961 cttgggcaccaccagagacgctttcaccatcgtctccagctgcttgtcccatgtatactg 1020 Query: 475 cctcaggtagtcgatgatgccaagtacaaactcatggttttgttcgtcgacgcccacaag 534 ||||||||||||||||||||| | ||| | |||| | || || ||| || || || || Sbjct: 1021 cctcaggtagtcgatgatgccgaataccagctcacgcttctgcctgtccactccaaccag 1080 Query: 535 tagagagtagtccataacattaactgacgtgagaaaagacgtatcgttccagatcgcccg 594 | |||||||||||| ||||| | ||||||||||||||||| ||||||||||| ||||| Sbjct: 1081 caaagagtagtccatgacattgatggacgtgagaaaagacgtgtcgttccagattgcccg 1140 Query: 595 ctgcaagagatgttttgttctcccaccaatatagattggggaaacacgcatatcctcgac 654 || ||||||||| |||| ||| ||||||||||||||||| ||||||||||| || || || Sbjct: 1141 ctccaagagatgctttgctcttccaccaatatagattggagaaacacgcatgtcatccac 1200 Query: 655 aaagttttgatccaagtagacagtg 679 |||||| || ||||||||||||||| Sbjct: 1201 aaagttctggtccaagtagacagtg 1225
>ref|XM_479680.1| Oryza sativa (japonica cultivar-group), mRNA Length = 5502 Score = 252 bits (127), Expect = 1e-63 Identities = 295/351 (84%) Strand = Plus / Minus Query: 328 atctggaaccgttaggaaatacttggccatgaacttcctgaaccttttcttgtactccct 387 ||||||||| || ||||| | ||| ||||||||||||| ||||||||||||||||||| | Sbjct: 5132 atctggaactgtgaggaagtgcttcgccatgaacttccggaaccttttcttgtactcctt 5073 Query: 388 gggtgaaatcaccgtcggcaactcattctttggcaccaccagagatgttttcacccatgt 447 |||||||| || || || | ||||||||||||| || || || ||||||||||||| Sbjct: 5072 gggtgaaactacagttggtgaaacattctttggcactactagggaacttttcacccatgt 5013 Query: 448 ctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgccaagtacaaactc 507 ||||| ||||||||||| |||||||||||||| || || |||||||||| ||||| ||| Sbjct: 5012 ttccagctgcttgtcccaagtgtactgcctcagataatcaatgatgccaaatacaagctc 4953 Query: 508 atggttttgttcgtcgacgcccacaagtagagagtagtccataacattaactgacgtgag 567 ||| |||| || ||| || |||||||| ||||| ||||||||||| || || || ||||| Sbjct: 4952 atgcttttctttgtccactcccacaagcagagaatagtccataacgttgaccgaagtgag 4893 Query: 568 aaaagacgtatcgttccagatcgcccgctgcaagagatgttttgttctcccaccaatata 627 || || || ||||||||||| || || ||||| ||||| |||||||| ||||||||||| Sbjct: 4892 gaatgatgtgtcgttccagattgcacgttgcaaaagatgctttgttcttccaccaatata 4833 Query: 628 gattggggaaacacgcatatcctcgacaaagttttgatccaagtagacagt 678 || || ||||||||||| |||||||| |||||||||||||||| ||||| Sbjct: 4832 aatcggagaaacacgcatgtcctcgacgtagttttgatccaagtaaacagt 4782
>dbj|AK120989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042P03, full insert sequence Length = 5500 Score = 252 bits (127), Expect = 1e-63 Identities = 295/351 (84%) Strand = Plus / Minus Query: 328 atctggaaccgttaggaaatacttggccatgaacttcctgaaccttttcttgtactccct 387 ||||||||| || ||||| | ||| ||||||||||||| ||||||||||||||||||| | Sbjct: 5131 atctggaactgtgaggaagtgcttcgccatgaacttccggaaccttttcttgtactcctt 5072 Query: 388 gggtgaaatcaccgtcggcaactcattctttggcaccaccagagatgttttcacccatgt 447 |||||||| || || || | ||||||||||||| || || || ||||||||||||| Sbjct: 5071 gggtgaaactacagttggtgaaacattctttggcactactagggaacttttcacccatgt 5012 Query: 448 ctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgccaagtacaaactc 507 ||||| ||||||||||| |||||||||||||| || || |||||||||| ||||| ||| Sbjct: 5011 ttccagctgcttgtcccaagtgtactgcctcagataatcaatgatgccaaatacaagctc 4952 Query: 508 atggttttgttcgtcgacgcccacaagtagagagtagtccataacattaactgacgtgag 567 ||| |||| || ||| || |||||||| ||||| ||||||||||| || || || ||||| Sbjct: 4951 atgcttttctttgtccactcccacaagcagagaatagtccataacgttgaccgaagtgag 4892 Query: 568 aaaagacgtatcgttccagatcgcccgctgcaagagatgttttgttctcccaccaatata 627 || || || ||||||||||| || || ||||| ||||| |||||||| ||||||||||| Sbjct: 4891 gaatgatgtgtcgttccagattgcacgttgcaaaagatgctttgttcttccaccaatata 4832 Query: 628 gattggggaaacacgcatatcctcgacaaagttttgatccaagtagacagt 678 || || ||||||||||| |||||||| |||||||||||||||| ||||| Sbjct: 4831 aatcggagaaacacgcatgtcctcgacgtagttttgatccaagtaaacagt 4781
>dbj|AK067468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104D05, full insert sequence Length = 3566 Score = 252 bits (127), Expect = 1e-63 Identities = 295/351 (84%) Strand = Plus / Minus Query: 328 atctggaaccgttaggaaatacttggccatgaacttcctgaaccttttcttgtactccct 387 ||||||||| || ||||| | ||| ||||||||||||| ||||||||||||||||||| | Sbjct: 3191 atctggaactgtgaggaagtgcttcgccatgaacttccggaaccttttcttgtactcctt 3132 Query: 388 gggtgaaatcaccgtcggcaactcattctttggcaccaccagagatgttttcacccatgt 447 |||||||| || || || | ||||||||||||| || || || ||||||||||||| Sbjct: 3131 gggtgaaactacagttggtgaaacattctttggcactactagggaacttttcacccatgt 3072 Query: 448 ctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgccaagtacaaactc 507 ||||| ||||||||||| |||||||||||||| || || |||||||||| ||||| ||| Sbjct: 3071 ttccagctgcttgtcccaagtgtactgcctcagataatcaatgatgccaaatacaagctc 3012 Query: 508 atggttttgttcgtcgacgcccacaagtagagagtagtccataacattaactgacgtgag 567 ||| |||| || ||| || |||||||| ||||| ||||||||||| || || || ||||| Sbjct: 3011 atgcttttctttgtccactcccacaagcagagaatagtccataacgttgaccgaagtgag 2952 Query: 568 aaaagacgtatcgttccagatcgcccgctgcaagagatgttttgttctcccaccaatata 627 || || || ||||||||||| || || ||||| ||||| |||||||| ||||||||||| Sbjct: 2951 gaatgatgtgtcgttccagattgcacgttgcaaaagatgctttgttcttccaccaatata 2892 Query: 628 gattggggaaacacgcatatcctcgacaaagttttgatccaagtagacagt 678 || || ||||||||||| |||||||| |||||||||||||||| ||||| Sbjct: 2891 aatcggagaaacacgcatgtcctcgacgtagttttgatccaagtaaacagt 2841
>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence Length = 123272 Score = 218 bits (110), Expect = 2e-53 Identities = 209/242 (86%) Strand = Plus / Minus Query: 321 tccaatcatctggaaccgttaggaaatacttggccatgaacttcctgaaccttttcttgt 380 ||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||||||| Sbjct: 78556 tccaatcgtctggaactgtcaggaaatacttggccatgaacttcctaaacctcttcttgt 78497 Query: 381 actccctgggtgaaatcaccgtcggcaactcattctttggcaccaccagagatgttttca 440 |||| ||||||| || || || || | ||||||||||||| |||| ||| ||||||| Sbjct: 78496 actctttgggtgagattactgttggtgaagcattctttggcactaccaaagaagttttca 78437 Query: 441 cccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgccaagta 500 |||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||| || Sbjct: 78436 cccacgtctccagttgcttgtcccatgtatactgccttaggtaatctatgatgccaaata 78377 Query: 501 caaactcatggttttgttcgtcgacgcccacaagtagagagtagtccataacattaactg 560 |||||||||| |||| || ||| || ||||| |||| ||||||||||||||||||| || Sbjct: 78376 caaactcatgcttttctttgtccactcccaccagtaacgagtagtccataacattaattg 78317 Query: 561 ac 562 || Sbjct: 78316 ac 78315 Score = 143 bits (72), Expect = 9e-31 Identities = 105/116 (90%) Strand = Plus / Minus Query: 563 gtgagaaaagacgtatcgttccagatcgcccgctgcaagagatgttttgttctcccacca 622 |||||||||| || ||||||||||| |||||||||||||||||||| ||||| |||||| Sbjct: 78226 gtgagaaaagctgtgtcgttccagattgcccgctgcaagagatgtttcgttcttccacca 78167 Query: 623 atatagattggggaaacacgcatatcctcgacaaagttttgatccaagtagacagt 678 | ||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 78166 acatatataggggaaacacgcatatcatcgacaaagttttgatccaagtaaacagt 78111
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 218 bits (110), Expect = 2e-53 Identities = 209/242 (86%) Strand = Plus / Minus Query: 321 tccaatcatctggaaccgttaggaaatacttggccatgaacttcctgaaccttttcttgt 380 ||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||||||| Sbjct: 35453753 tccaatcgtctggaactgtcaggaaatacttggccatgaacttcctaaacctcttcttgt 35453694 Query: 381 actccctgggtgaaatcaccgtcggcaactcattctttggcaccaccagagatgttttca 440 |||| ||||||| || || || || | ||||||||||||| |||| ||| ||||||| Sbjct: 35453693 actctttgggtgagattactgttggtgaagcattctttggcactaccaaagaagttttca 35453634 Query: 441 cccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgccaagta 500 |||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||| || Sbjct: 35453633 cccacgtctccagttgcttgtcccatgtatactgccttaggtaatctatgatgccaaata 35453574 Query: 501 caaactcatggttttgttcgtcgacgcccacaagtagagagtagtccataacattaactg 560 |||||||||| |||| || ||| || ||||| |||| ||||||||||||||||||| || Sbjct: 35453573 caaactcatgcttttctttgtccactcccaccagtaacgagtagtccataacattaattg 35453514 Query: 561 ac 562 || Sbjct: 35453513 ac 35453512 Score = 143 bits (72), Expect = 9e-31 Identities = 105/116 (90%) Strand = Plus / Minus Query: 563 gtgagaaaagacgtatcgttccagatcgcccgctgcaagagatgttttgttctcccacca 622 |||||||||| || ||||||||||| |||||||||||||||||||| ||||| |||||| Sbjct: 35453423 gtgagaaaagctgtgtcgttccagattgcccgctgcaagagatgtttcgttcttccacca 35453364 Query: 623 atatagattggggaaacacgcatatcctcgacaaagttttgatccaagtagacagt 678 | ||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 35453363 acatatataggggaaacacgcatatcatcgacaaagttttgatccaagtaaacagt 35453308
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 168 bits (85), Expect = 2e-38 Identities = 190/225 (84%) Strand = Plus / Minus Query: 328 atctggaaccgttaggaaatacttggccatgaacttcctgaaccttttcttgtactccct 387 ||||||||| || ||||| | ||| ||||||||||||| ||||||||||||||||||| | Sbjct: 252035 atctggaactgtgaggaagtgcttcgccatgaacttccggaaccttttcttgtactcctt 251976 Query: 388 gggtgaaatcaccgtcggcaactcattctttggcaccaccagagatgttttcacccatgt 447 |||||||| || || || | ||||||||||||| || || || ||||||||||||| Sbjct: 251975 gggtgaaactacagttggtgaaacattctttggcactactagggaacttttcacccatgt 251916 Query: 448 ctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgccaagtacaaactc 507 ||||| ||||||||||| |||||||||||||| || || |||||||||| ||||| ||| Sbjct: 251915 ttccagctgcttgtcccaagtgtactgcctcagataatcaatgatgccaaatacaagctc 251856 Query: 508 atggttttgttcgtcgacgcccacaagtagagagtagtccataac 552 ||| |||| || ||| || |||||||| ||||| ||||||||||| Sbjct: 251855 atgcttttctttgtccactcccacaagcagagaatagtccataac 251811 Score = 97.6 bits (49), Expect = 5e-17 Identities = 88/101 (87%) Strand = Plus / Minus Query: 578 tcgttccagatcgcccgctgcaagagatgttttgttctcccaccaatatagattggggaa 637 ||||||||||| || || ||||| ||||| |||||||| ||||||||||| || || ||| Sbjct: 251697 tcgttccagattgcacgttgcaaaagatgctttgttcttccaccaatataaatcggagaa 251638 Query: 638 acacgcatatcctcgacaaagttttgatccaagtagacagt 678 |||||||| |||||||| |||||||||||||||| ||||| Sbjct: 251637 acacgcatgtcctcgacgtagttttgatccaagtaaacagt 251597 Score = 56.0 bits (28), Expect = 2e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 440 acccatgtctccagttgcttgtcccatgtgtactgcctca 479 ||||||||||| || |||||||||||||| |||||||||| Sbjct: 22003987 acccatgtctcgaggtgcttgtcccatgtatactgcctca 22003948 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 436 tttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgcc 495 ||||||||| ||||| || ||||||||||| |||||||| | || |||||| || ||||| Sbjct: 20659455 tttcacccaggtctcgagctgcttgtcccaggtgtactggcgcaagtagtcaataatgcc 20659514 Query: 496 aa 497 || Sbjct: 20659515 aa 20659516
>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1300_E01 Length = 103022 Score = 168 bits (85), Expect = 2e-38 Identities = 190/225 (84%) Strand = Plus / Minus Query: 328 atctggaaccgttaggaaatacttggccatgaacttcctgaaccttttcttgtactccct 387 ||||||||| || ||||| | ||| ||||||||||||| ||||||||||||||||||| | Sbjct: 18461 atctggaactgtgaggaagtgcttcgccatgaacttccggaaccttttcttgtactcctt 18402 Query: 388 gggtgaaatcaccgtcggcaactcattctttggcaccaccagagatgttttcacccatgt 447 |||||||| || || || | ||||||||||||| || || || ||||||||||||| Sbjct: 18401 gggtgaaactacagttggtgaaacattctttggcactactagggaacttttcacccatgt 18342 Query: 448 ctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgccaagtacaaactc 507 ||||| ||||||||||| |||||||||||||| || || |||||||||| ||||| ||| Sbjct: 18341 ttccagctgcttgtcccaagtgtactgcctcagataatcaatgatgccaaatacaagctc 18282 Query: 508 atggttttgttcgtcgacgcccacaagtagagagtagtccataac 552 ||| |||| || ||| || |||||||| ||||| ||||||||||| Sbjct: 18281 atgcttttctttgtccactcccacaagcagagaatagtccataac 18237 Score = 97.6 bits (49), Expect = 5e-17 Identities = 88/101 (87%) Strand = Plus / Minus Query: 578 tcgttccagatcgcccgctgcaagagatgttttgttctcccaccaatatagattggggaa 637 ||||||||||| || || ||||| ||||| |||||||| ||||||||||| || || ||| Sbjct: 18123 tcgttccagattgcacgttgcaaaagatgctttgttcttccaccaatataaatcggagaa 18064 Query: 638 acacgcatatcctcgacaaagttttgatccaagtagacagt 678 |||||||| |||||||| |||||||||||||||| ||||| Sbjct: 18063 acacgcatgtcctcgacgtagttttgatccaagtaaacagt 18023
>gb|AY112476.1| Zea mays CL8749_1 mRNA sequence Length = 679 Score = 111 bits (56), Expect = 3e-21 Identities = 181/223 (81%) Strand = Plus / Plus Query: 411 cattctttggcaccaccagagatgttttcacccatgtctccagttgcttgtcccatgtgt 470 ||||||| || || |||||||| || ||||||||||| |||| ||| |||||||| || | Sbjct: 444 cattcttgggtactaccagagaagtcttcacccatgtttccaattgtttgtcccaagtat 503 Query: 471 actgcctcaggtagtcgatgatgccaagtacaaactcatggttttgttcgtcgacgccca 530 | |||||||| || || |||||||||| |||| ||||| || | || ||| || || | Sbjct: 504 attgcctcagataatcaatgatgccaaacacaagttcatgcttctctttgtccactccga 563 Query: 531 caagtagagagtagtccataacattaactgacgtgagaaaagacgtatcgttccagatcg 590 |||| ||||| |||||||| ||||| || || ||||| ||||||| || |||||||| | Sbjct: 564 caaggagagaatagtccatgacattcaccgaagtgaggaaagacgngtcattccagattg 623 Query: 591 cccgctgcaagagatgttttgttctcccaccaatatagattgg 633 | |||||||| ||||| |||| ||| |||||||||| |||||| Sbjct: 624 cacgctgcaaaagatgctttggtcttccaccaatattgattgg 666
>gb|AC151666.15| Medicago truncatula clone mth2-30n15, complete sequence Length = 116410 Score = 77.8 bits (39), Expect = 4e-11 Identities = 105/127 (82%) Strand = Plus / Plus Query: 436 tttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgcc 495 |||||||||||| || || |||||||||||||| |||||||||| | | || || || || Sbjct: 77874 tttcacccatgtttcaagatgcttgtcccatgtatactgcctcatgaaatcaattattcc 77933 Query: 496 aagtacaaactcatggttttgttcgtcgacgcccacaagtagagagtagtccataacatt 555 ||| || |||||||| |||| ||| || || || |||||||| || |||||||| |||| Sbjct: 77934 aagaactaactcatgcttttcttcatccaccccaacaagtagtgaatagtccattacatc 77993 Query: 556 aactgac 562 ||||||| Sbjct: 77994 aactgac 78000
>gb|AC157534.12| Medicago truncatula clone mth2-50p19, complete sequence Length = 116410 Score = 77.8 bits (39), Expect = 4e-11 Identities = 105/127 (82%) Strand = Plus / Plus Query: 436 tttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgcc 495 |||||||||||| || || |||||||||||||| |||||||||| | | || || || || Sbjct: 77874 tttcacccatgtttcaagatgcttgtcccatgtatactgcctcatgaaatcaattattcc 77933 Query: 496 aagtacaaactcatggttttgttcgtcgacgcccacaagtagagagtagtccataacatt 555 ||| || |||||||| |||| ||| || || || |||||||| || |||||||| |||| Sbjct: 77934 aagaactaactcatgcttttcttcatccaccccaacaagtagtgaatagtccattacatc 77993 Query: 556 aactgac 562 ||||||| Sbjct: 77994 aactgac 78000
>ref|NM_103148.2| Arabidopsis thaliana 1-phosphatidylinositol-4-phosphate 5-kinase AT1G34260 mRNA, complete cds Length = 4720 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 411 cattctttggcaccaccagagatgttttcacccatgtctccagttgcttgtcccatgtgt 470 |||||||||| ||||||| ||| | ||||||||||||||| | |||||||||||||||| Sbjct: 4261 cattctttggtaccaccaaagacgatttcacccatgtctctaactgcttgtcccatgtgt 4202 Query: 471 actgcctcaggtagtcgatgat 492 | || ||||| || |||||||| Sbjct: 4201 attgtctcagataatcgatgat 4180
>gb|AC007454.3|F23M19 Arabidopsis thaliana chromosome 1 BAC F23M19 sequence, complete sequence Length = 88401 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 411 cattctttggcaccaccagagatgttttcacccatgtctccagttgcttgtcccatgtgt 470 |||||||||| ||||||| ||| | ||||||||||||||| | |||||||||||||||| Sbjct: 43138 cattctttggtaccaccaaagacgatttcacccatgtctctaactgcttgtcccatgtgt 43197 Query: 471 actgcctcaggtagtcgatgat 492 | || ||||| || |||||||| Sbjct: 43198 attgtctcagataatcgatgat 43219
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Plus Query: 437 ttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgcc 495 |||||||| |||||||| ||||||||||| |||||||||| ||| ||||||||||||| Sbjct: 14056018 ttcacccacgtctccagctgcttgtcccaggtgtactgccggaggaagtcgatgatgcc 14056076 Score = 50.1 bits (25), Expect = 0.010 Identities = 43/49 (87%) Strand = Plus / Plus Query: 431 gatgttttcacccatgtctccagttgcttgtcccatgtgtactgcctca 479 |||||||||||||| | ||||| ||| |||||||| ||||| ||||||| Sbjct: 5746177 gatgttttcacccaagactccaattgtttgtcccaggtgtattgcctca 5746225
>dbj|AP005732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0014M19 Length = 129270 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Plus Query: 437 ttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgcc 495 |||||||| |||||||| ||||||||||| |||||||||| ||| ||||||||||||| Sbjct: 34953 ttcacccacgtctccagctgcttgtcccaggtgtactgccggaggaagtcgatgatgcc 35011
>dbj|AK063300.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F02, full insert sequence Length = 1437 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Minus Query: 437 ttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgcc 495 |||||||| |||||||| ||||||||||| |||||||||| ||| ||||||||||||| Sbjct: 815 ttcacccacgtctccagctgcttgtcccaggtgtactgccggaggaagtcgatgatgcc 757
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 437 ttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgat 492 |||||||| |||||||| ||||||||||| |||||||| | |||||||||||||| Sbjct: 8329032 ttcacccaggtctccagctgcttgtcccaggtgtactgacgaaggtagtcgatgat 8329087
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 437 ttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgat 492 |||||||| |||||||| ||||||||||| |||||||| | |||||||||||||| Sbjct: 122537 ttcacccaggtctccagctgcttgtcccaggtgtactgacgaaggtagtcgatgat 122592
>ref|NM_112285.2| Arabidopsis thaliana 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / protein binding / zinc ion binding AT3G14270 mRNA, complete cds Length = 5984 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 436 tttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgat 489 ||||||||| | ||| || ||||||||||||||||||||||||| | ||||||| Sbjct: 5515 tttcacccaagactctagatgcttgtcccatgtgtactgcctcaagaagtcgat 5462
>dbj|AB022220.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLN21 Length = 83906 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 436 tttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgat 489 ||||||||| | ||| || ||||||||||||||||||||||||| | ||||||| Sbjct: 25082 tttcacccaagactctagatgcttgtcccatgtgtactgcctcaagaagtcgat 25029
>ref|NM_105770.4| Arabidopsis thaliana 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / protein binding AT1G71010 mRNA, complete cds Length = 5203 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 440 acccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgat 492 ||||| ||||| || |||||||||||||||||||| |||| | |||||||||| Sbjct: 4814 acccaagtctctaggtgcttgtcccatgtgtactgtctcatgaagtcgatgat 4762
>gb|BT010349.1| Arabidopsis thaliana At1g71010 mRNA, complete cds Length = 2382 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 440 acccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgat 492 ||||| ||||| || |||||||||||||||||||| |||| | |||||||||| Sbjct: 2249 acccaagtctctaggtgcttgtcccatgtgtactgtctcatgaagtcgatgat 2197
>gb|AY065168.1| Arabidopsis thaliana unknown protein (At1g71010; F15H11.20) mRNA, complete cds Length = 2876 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 440 acccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgat 492 ||||| ||||| || |||||||||||||||||||| |||| | |||||||||| Sbjct: 2612 acccaagtctctaggtgcttgtcccatgtgtactgtctcatgaagtcgatgat 2560
>gb|AC016972.7|AC016972 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence Length = 66653 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 440 acccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgat 492 ||||| ||||| || |||||||||||||||||||| |||| | |||||||||| Sbjct: 13335 acccaagtctctaggtgcttgtcccatgtgtactgtctcatgaagtcgatgat 13283
>gb|AC008148.2|AC008148 Arabidopsis thaliana chromosome I BAC F15H11 genomic sequence, complete sequence Length = 110514 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 440 acccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgat 492 ||||| ||||| || |||||||||||||||||||| |||| | |||||||||| Sbjct: 106179 acccaagtctctaggtgcttgtcccatgtgtactgtctcatgaagtcgatgat 106127
>ref|XM_482701.1| Oryza sativa (japonica cultivar-group), mRNA Length = 5466 Score = 56.0 bits (28), Expect = 2e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 440 acccatgtctccagttgcttgtcccatgtgtactgcctca 479 ||||||||||| || |||||||||||||| |||||||||| Sbjct: 5264 acccatgtctcgaggtgcttgtcccatgtatactgcctca 5225
>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1005_H01 Length = 128124 Score = 56.0 bits (28), Expect = 2e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 440 acccatgtctccagttgcttgtcccatgtgtactgcctca 479 ||||||||||| || |||||||||||||| |||||||||| Sbjct: 89736 acccatgtctcgaggtgcttgtcccatgtatactgcctca 89697
>dbj|AK102479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094J24, full insert sequence Length = 2840 Score = 56.0 bits (28), Expect = 2e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 440 acccatgtctccagttgcttgtcccatgtgtactgcctca 479 ||||||||||| || |||||||||||||| |||||||||| Sbjct: 2254 acccatgtctcgaggtgcttgtcccatgtatactgcctca 2215
>dbj|AK073924.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074N18, full insert sequence Length = 2090 Score = 56.0 bits (28), Expect = 2e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 440 acccatgtctccagttgcttgtcccatgtgtactgcctca 479 ||||||||||| || |||||||||||||| |||||||||| Sbjct: 1452 acccatgtctcgaggtgcttgtcccatgtatactgcctca 1413
>ref|XM_482503.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4893 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 436 tttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgcc 495 ||||||||| ||||| || ||||||||||| |||||||| | || |||||| || ||||| Sbjct: 4764 tttcacccaggtctcgagctgcttgtcccaggtgtactggcgcaagtagtcaataatgcc 4705 Query: 496 aa 497 || Sbjct: 4704 aa 4703
>ref|XM_470891.1| Oryza sativa (japonica cultivar-group), mRNA Length = 5457 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 434 gttttcacccatgtctccagttgcttgtcccatgtgtactgcctca 479 ||||||||||||||||| || || ||||||||||| || ||||||| Sbjct: 5279 gttttcacccatgtctctagatgtttgtcccatgtatattgcctca 5234
>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0087G11, complete sequence Length = 169728 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 434 gttttcacccatgtctccagttgcttgtcccatgtgtactgcctca 479 ||||||||||||||||| || || ||||||||||| || ||||||| Sbjct: 30033 gttttcacccatgtctctagatgtttgtcccatgtatattgcctca 29988
>gb|AC084295.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015K03, complete sequence Length = 89172 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 434 gttttcacccatgtctccagttgcttgtcccatgtgtactgcctca 479 ||||||||||||||||| || || ||||||||||| || ||||||| Sbjct: 14602 gttttcacccatgtctctagatgtttgtcccatgtatattgcctca 14647
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 434 gttttcacccatgtctccagttgcttgtcccatgtgtactgcctca 479 ||||||||||||||||| || || ||||||||||| || ||||||| Sbjct: 16020384 gttttcacccatgtctctagatgtttgtcccatgtatattgcctca 16020429
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 434 gttttcacccatgtctccagttgcttgtcccatgtgtactgcctca 479 ||||||||||||||||| || || ||||||||||| || ||||||| Sbjct: 16014918 gttttcacccatgtctctagatgtttgtcccatgtatattgcctca 16014963
>dbj|AP003898.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1663_D06 Length = 139103 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 436 tttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgcc 495 ||||||||| ||||| || ||||||||||| |||||||| | || |||||| || ||||| Sbjct: 133827 tttcacccaggtctcgagctgcttgtcccaggtgtactggcgcaagtagtcaataatgcc 133886 Query: 496 aa 497 || Sbjct: 133887 aa 133888
>dbj|AK120080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013012I05, full insert sequence Length = 5569 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 436 tttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgcc 495 ||||||||| ||||| || ||||||||||| |||||||| | || |||||| || ||||| Sbjct: 5113 tttcacccaggtctcgagctgcttgtcccaggtgtactggcgcaagtagtcaataatgcc 5054 Query: 496 aa 497 || Sbjct: 5053 aa 5052
>dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C08 Length = 152460 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 436 tttcacccatgtctccagttgcttgtcccatgtgtactgcctcaggtagtcgatgatgcc 495 ||||||||| ||||| || ||||||||||| |||||||| | || |||||| || ||||| Sbjct: 31908 tttcacccaggtctcgagctgcttgtcccaggtgtactggcgcaagtagtcaataatgcc 31967 Query: 496 aa 497 || Sbjct: 31968 aa 31969
>ref|XM_450466.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4683 Score = 50.1 bits (25), Expect = 0.010 Identities = 43/49 (87%) Strand = Plus / Minus Query: 431 gatgttttcacccatgtctccagttgcttgtcccatgtgtactgcctca 479 |||||||||||||| | ||||| ||| |||||||| ||||| ||||||| Sbjct: 4574 gatgttttcacccaagactccaattgtttgtcccaggtgtattgcctca 4526
>dbj|AP005594.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0701E06 Length = 123415 Score = 50.1 bits (25), Expect = 0.010 Identities = 43/49 (87%) Strand = Plus / Plus Query: 431 gatgttttcacccatgtctccagttgcttgtcccatgtgtactgcctca 479 |||||||||||||| | ||||| ||| |||||||| ||||| ||||||| Sbjct: 42382 gatgttttcacccaagactccaattgtttgtcccaggtgtattgcctca 42430
>gb|AY109801.1| Zea mays CL30840_1 mRNA sequence Length = 1003 Score = 48.1 bits (24), Expect = 0.038 Identities = 36/40 (90%) Strand = Plus / Plus Query: 440 acccatgtctccagttgcttgtcccatgtgtactgcctca 479 |||||||| || || |||||||||||||| |||||||||| Sbjct: 533 acccatgtttcaaggtgcttgtcccatgtatactgcctca 572
>gb|AC150204.30| Medicago truncatula clone mth2-69i3, complete sequence Length = 115027 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 437 ttcacccatgtctccagttgcttgtcccatgtgtactgcctca 479 |||||||| || || || |||||||||||||| |||||||||| Sbjct: 19009 ttcacccaagtttcaaggtgcttgtcccatgtatactgcctca 18967
>gb|AC117661.20| Mus musculus chromosome 6, clone RP23-343P1, complete sequence Length = 180209 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 594 gctgcaagagatgttttgttct 615 |||||||||||||||||||||| Sbjct: 29105 gctgcaagagatgttttgttct 29126
>gb|AC122362.5| Mus musculus BAC clone RP23-430N1 from chromosome 6, complete sequence Length = 212275 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 594 gctgcaagagatgttttgttct 615 |||||||||||||||||||||| Sbjct: 190018 gctgcaagagatgttttgttct 190039
>emb|AL390755.5| Human DNA sequence from clone RP11-472K17 on chromosome 13 Contains a novel gene, the 3' end of the COL4A1 gene for collagen type IV alpha 1 and a CpG island, complete sequence Length = 186120 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 161 aaaagaagccgggagatgaactccataac 189 ||||||||| ||||||||||| ||||||| Sbjct: 4137 aaaagaagcagggagatgaacaccataac 4109
>emb|AL078584.17|HSJ245M18 Human DNA sequence from clone RP1-245M18 on chromosome 6p21.32-22.3 Contains the 5' end of the gene for chromosome 6 open reading frame 32 (PL48, DIFF40, DIFF48, KIAA0386), a cytochrome c oxidase polypeptide II pseudogene and a CpG island, complete sequence Length = 104770 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 atattttggaccaaacttcccccaa 74 |||| |||||||||||||||||||| Sbjct: 5773 atatcttggaccaaacttcccccaa 5797
>emb|BX510939.5| Zebrafish DNA sequence from clone CH211-78C9 in linkage group 16, complete sequence Length = 163843 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 gaattttacaagtataaaact 35 ||||||||||||||||||||| Sbjct: 153178 gaattttacaagtataaaact 153198
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 gcaaaatagctaaaaagaagc 169 ||||||||||||||||||||| Sbjct: 10505617 gcaaaatagctaaaaagaagc 10505597
>dbj|AP005104.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0042E08 Length = 166257 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 gcaaaatagctaaaaagaagc 169 ||||||||||||||||||||| Sbjct: 56946 gcaaaatagctaaaaagaagc 56926
>gb|AY112489.1| Zea mays CL31817_1 mRNA sequence Length = 600 Score = 42.1 bits (21), Expect = 2.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 347 tacttggccatgaacttcctgaaccttttcttgtact 383 ||||||| |||| |||||||||||| |||||||||| Sbjct: 295 tacttggacatggccttcctgaacctcttcttgtact 331
>emb|CR974430.11| Mouse DNA sequence from clone RP23-373C24 on chromosome 17, complete sequence Length = 199120 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 caaaagtttgcctaaaagatg 92 ||||||||||||||||||||| Sbjct: 146139 caaaagtttgcctaaaagatg 146159
>emb|AL359352.21| Mouse DNA sequence from clone CT7-350K7 on chromosome 17, complete sequence Length = 162935 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 caaaagtttgcctaaaagatg 92 ||||||||||||||||||||| Sbjct: 68120 caaaagtttgcctaaaagatg 68140
>ref|XM_513449.1| PREDICTED: Pan troglodytes similar to Pals1-associated tight junction protein (LOC456900), mRNA Length = 7074 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gtttgatgatgaggcttctg 246 |||||||||||||||||||| Sbjct: 1839 gtttgatgatgaggcttctg 1858
>ref|XM_960548.1| Neurospora crassa OR74A hypothetical protein (NCU02510.1) partial mRNA Length = 5037 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 ctccataacggcgagagcag 200 |||||||||||||||||||| Sbjct: 4164 ctccataacggcgagagcag 4145
>ref|XM_331708.1| Neurospora crassa OR74A hypothetical protein (NCU02510.1) partial mRNA Length = 5037 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 ctccataacggcgagagcag 200 |||||||||||||||||||| Sbjct: 4164 ctccataacggcgagagcag 4145
>gb|AC117228.2| Mus musculus BAC clone RP23-380J24 from chromosome 2, complete sequence Length = 179980 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 tttgatgatgaggcttctgg 247 |||||||||||||||||||| Sbjct: 167027 tttgatgatgaggcttctgg 167008
>gb|BC038529.1| Homo sapiens, clone IMAGE:5164544, mRNA Length = 1024 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 227 gtttgatgatgaggcttctggctg 250 |||||||||||||||||| ||||| Sbjct: 820 gtttgatgatgaggcttcaggctg 797
>gb|AC122926.2| Mus musculus BAC clone RP23-10E15 from 6, complete sequence Length = 193055 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 gattgtgaattttacaagta 28 |||||||||||||||||||| Sbjct: 50966 gattgtgaattttacaagta 50947
>gb|AC098727.3| Mus musculus BAC clone RP23-3H16 from 4, complete sequence Length = 231302 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gagaggatacatgtatattt 55 |||||||||||||||||||| Sbjct: 130327 gagaggatacatgtatattt 130308
>gb|DQ116961.1| West Nile virus isolate goshawk-Hungary/04, complete genome Length = 11028 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 ttcttgtactccctgggtga 393 |||||||||||||||||||| Sbjct: 4655 ttcttgtactccctgggtga 4636
>gb|AC113043.7| Mus musculus chromosome 1, clone RP23-243C7, complete sequence Length = 191557 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 attgtgaattttacaagtataaaa 33 ||||| |||||||||||||||||| Sbjct: 25164 attgtaaattttacaagtataaaa 25141
>gb|AC145574.5| Mus musculus BAC clone RP24-411C16 from chromosome 6, complete sequence Length = 147836 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 gattgtgaattttacaagta 28 |||||||||||||||||||| Sbjct: 135874 gattgtgaattttacaagta 135855
>emb|AL162712.16| Human DNA sequence from clone RP11-158A8 on chromosome 13 Contains a novel gene, complete sequence Length = 115331 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 227 gtttgatgatgaggcttctggctg 250 |||||||||||||||||| ||||| Sbjct: 83601 gtttgatgatgaggcttcaggctg 83578
>emb|AL157886.13| Human DNA sequence from clone RP11-59M22 on chromosome 9q21.31-21.33, complete sequence Length = 156956 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 tatttacatgttcctgaacttttc 310 |||||||||||||||| ||||||| Sbjct: 95089 tatttacatgttcctggacttttc 95112
>gb|AC133618.3| Rattus norvegicus 18 BAC CH230-71N8 (Children's Hospital Oakland Research Institute) complete sequence Length = 234684 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 626 tagattggggaaacacgcat 645 |||||||||||||||||||| Sbjct: 66397 tagattggggaaacacgcat 66416
>gb|AC099787.2| Homo sapiens chromosome 1 clone RP4-538N4, complete sequence Length = 177329 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ttggccatgaacttcctgaa 369 |||||||||||||||||||| Sbjct: 174344 ttggccatgaacttcctgaa 174325
>gb|AE010151.1| Pyrococcus furiosus DSM 3638, section 26 of 173 of the complete genome Length = 10947 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 aattttacaagtataaaact 35 |||||||||||||||||||| Sbjct: 60 aattttacaagtataaaact 41
>gb|AE010150.1| Pyrococcus furiosus DSM 3638, section 25 of 173 of the complete genome Length = 11886 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 aattttacaagtataaaact 35 |||||||||||||||||||| Sbjct: 11886 aattttacaagtataaaact 11867
>gb|AC022418.5| Homo sapiens chromosome 5 clone CTD-2026A21, complete sequence Length = 145089 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 attgtgaattttacaagtat 29 |||||||||||||||||||| Sbjct: 105214 attgtgaattttacaagtat 105233
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 cgttccagatcgcccgctgc 598 |||||||||||||||||||| Sbjct: 1732738 cgttccagatcgcccgctgc 1732757
>gb|AC091608.2| Homo sapiens chromosome 1 clone RP11-97O14, complete sequence Length = 154677 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ttggccatgaacttcctgaa 369 |||||||||||||||||||| Sbjct: 128291 ttggccatgaacttcctgaa 128310
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 atcaccgtcggcaactcatt 414 |||||||||||||||||||| Sbjct: 1216205 atcaccgtcggcaactcatt 1216224
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 gcaactcattctttggcacc 424 |||||||||||||||||||| Sbjct: 1579037 gcaactcattctttggcacc 1579056
>emb|BX546441.10| Mouse DNA sequence from clone RP23-366I14 on chromosome 2, complete sequence Length = 114325 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 tttgatgatgaggcttctgg 247 |||||||||||||||||||| Sbjct: 26463 tttgatgatgaggcttctgg 26482
>emb|BX005017.13| Zebrafish DNA sequence from clone DKEY-200P10 in linkage group 12, complete sequence Length = 111448 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tttactgattgtgaatttta 22 |||||||||||||||||||| Sbjct: 10903 tttactgattgtgaatttta 10884
>gb|AY880062.1| Lycopersicon esculentum clone TGRII repetitive sequence Length = 1791 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 aattttacaagtataaaact 35 |||||||||||||||||||| Sbjct: 518 aattttacaagtataaaact 499
>emb|CR556714.4| Zebrafish DNA sequence from clone DKEY-29P13 in linkage group 11, complete sequence Length = 124598 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 agtttgcctaaaagatgcaa 95 |||||||||||||||||||| Sbjct: 43398 agtttgcctaaaagatgcaa 43417
>emb|AL691475.18| Mouse DNA sequence from clone RP23-264P11 on chromosome 4 Contains part of the Astn2 gene for astrotactin 2 and a CpG island, complete sequence Length = 174567 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gagaggatacatgtatattt 55 |||||||||||||||||||| Sbjct: 168839 gagaggatacatgtatattt 168820 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,107,907 Number of Sequences: 3902068 Number of extensions: 6107907 Number of successful extensions: 114444 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113950 Number of HSP's gapped (non-prelim): 490 length of query: 684 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 661 effective length of database: 17,143,297,704 effective search space: 11331719782344 effective search space used: 11331719782344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)