Clone Information

BLAST Search Result

Clone Name	rbasd18g18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_482956.1\| Oryza sativa (japonica cultivar-group), mRNA	88	4e-14
2	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	88	4e-14
3	dbj\|AP003917.3\| Oryza sativa (japonica cultivar-group) genomic D...	88	4e-14
4	gb\|AF061282.1\| Sorghum bicolor 22 kDa kafirin cluster	46	0.15
5	ref\|XM_477103.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.58
6	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.58
7	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	44	0.58
8	dbj\|AP003748.4\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.58
9	dbj\|AK120944.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.58
10	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	44	0.58
11	gb\|CP000010.1\| Burkholderia mallei ATCC 23344 chromosome 1, comp...	42	2.3
12	ref\|XM_362484.1\| Magnaporthe grisea 70-15 hypothetical protein (...	42	2.3
13	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	42	2.3
14	gb\|AC145802.2\| Xenopus tropicalis clone CH216-80C17, complete se...	42	2.3
15	ref\|XM_381054.1\| Gibberella zeae PH-1 chromosome 1 hypothetical ...	42	2.3
16	ref\|XM_860065.1\| PREDICTED: Canis familiaris similar to N-ethylm...	42	2.3
17	ref\|XM_847061.1\| PREDICTED: Canis familiaris similar to N-ethylm...	42	2.3
18	emb\|AL606754.6\| Human DNA sequence from clone RP11-479E16 on chr...	42	2.3
19	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	42	2.3
20	dbj\|AP007255.1\| Magnetospirillum magneticum AMB-1 DNA, complete ...	42	2.3
21	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
22	dbj\|AP008226.1\| Thermus thermophilus HB8 genomic DNA, complete g...	42	2.3
23	dbj\|AP003567.4\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
24	dbj\|AP004015.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
25	emb\|AJ007559.1\|CRE7559 Chlamydomonas reinhardtii mRNA for 1-deox...	42	2.3
26	ref\|XM_566224.1\| Anopheles gambiae str. PEST ENSANGP00000026283 ...	42	2.3
27	ref\|XM_310956.2\| Anopheles gambiae str. PEST ENSANGP00000019430 ...	42	2.3
28	gb\|AE017221.1\| Thermus thermophilus HB27, complete genome	42	2.3
29	gb\|AC152976.1\| Mus musculus BAC RP23-103K17 (Roswell Park Cance...	40	9.1
30	gb\|CP000143.1\| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl...	40	9.1
31	gb\|CP000094.1\| Pseudomonas fluorescens PfO-1, complete genome	40	9.1
32	gb\|AC115767.14\| Mus musculus chromosome 6, clone RP23-83K15, com...	40	9.1
33	gb\|AC137595.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.1
34	gb\|AC102668.12\| Mus musculus chromosome 6, clone RP23-296I18, co...	40	9.1
35	gb\|AC122395.4\| Mus musculus BAC clone RP24-86H17 from chromosome...	40	9.1
36	gb\|DQ462412.1\| Spinibarbus sinensis neuropeptide Y mRNA, complet...	40	9.1
37	ref\|XM_739811.1\| Plasmodium chabaudi chabaudi hypothetical prote...	40	9.1
38	emb\|BX016260.1\|CNS08KPK Single read from an extremity of a full-...	40	9.1
39	emb\|BX119976.8\| Zebrafish DNA sequence from clone CH211-196F5 in...	40	9.1
40	emb\|CR762418.5\| Zebrafish DNA sequence from clone RP71-15A9 in l...	40	9.1
41	gb\|AC107960.3\| Homo sapiens chromosome 8, clone RP11-983C19, com...	40	9.1
42	gb\|AC107870.6\| Homo sapiens chromosome 8, clone CTC-777N14, comp...	40	9.1
43	gb\|AC099818.2\| Homo sapiens chromosome 8, clone RP11-99I9, compl...	40	9.1
44	gb\|DQ380626.1\| Environmental sequence clone W1-9 arsenite oxidas...	40	9.1
45	gb\|AC095036.2\| Homo sapiens chromosome 1 clone RP11-320E2, compl...	40	9.1
46	gb\|AC098657.2\| Homo sapiens chromosome 1 clone RP11-339A11, comp...	40	9.1
47	ref\|NM_131074.1\| Danio rerio neuropeptide Y (npy), mRNA	40	9.1
48	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	9.1
49	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
50	dbj\|AP006878.1\| Thermococcus kodakarensis KOD1 DNA, complete genome	40	9.1
51	gb\|AC098645.3\| Papio anubis clone RP41-470J23, complete sequence	40	9.1
52	gb\|CP000157.1\| Erythrobacter litoralis HTCC2594, complete genome	40	9.1
53	gb\|AF287347.1\|AF287347 Cyprinus carpio neuropeptide Y mRNA, comp...	40	9.1
54	gb\|AF233874.1\|AF233874 Danio rerio neuropeptide Y precursor gene...	40	9.1
55	emb\|BX640495.10\| Zebrafish DNA sequence from clone CH211-107H7 i...	40	9.1
56	gb\|AE005103.1\| Halobacterium sp. NRC-1 section 134 of 170 of the...	40	9.1
57	emb\|BX640464.10\| Zebrafish DNA sequence from clone DKEY-22M8 in ...	40	9.1
58	emb\|BX510657.9\| Zebrafish DNA sequence from clone CH211-142K18 i...	40	9.1
59	dbj\|AP005661.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.1
60	gb\|M87297.1\|CRANPY Carassius auratus neuropeptide Y mRNA, comple...	40	9.1

>ref|XM_482956.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1218

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 158/196 (80%)
 Strand = Plus / Minus

                                                                        
Query: 222  ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcctccgcgtttg 281
            |||| ||||| ||||| |||||||||||| ||||| ||||||| ||||  ||   ||| |
Sbjct: 1198 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 1139

                                                                        
Query: 282  tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 341
            ||||| | |||| ||| ||||| |   |||||||||||||||| || |  || || ||||
Sbjct: 1138 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 1079

                                                                        
Query: 342  cggcgagaagctcatccccaatcttcaccaacctatccaagttggccttggagcagtcgt 401
             | ||||||||   ||||||||||||||||   |||||| |||  |||||||||||||||
Sbjct: 1078 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 1019

                            
Query: 402  cgatggagcccgcact 417
            |||| |||||||||||
Sbjct: 1018 cgatcgagcccgcact 1003



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 552 ccttgacgagccagctcaagatgccccacttggcggcgtccttggc 597
           |||||| ||||||| | ||||| ||||||||||| |||||||||||
Sbjct: 868 ccttgatgagccagttgaagattccccacttggcagcgtccttggc 823

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 158/196 (80%)
 Strand = Plus / Plus

                                                                            
Query: 222      ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcctccgcgtttg 281
                |||| ||||| ||||| |||||||||||| ||||| ||||||| ||||  ||   ||| |
Sbjct: 23538537 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 23538596

                                                                            
Query: 282      tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 341
                ||||| | |||| ||| ||||| |   |||||||||||||||| || |  || || ||||
Sbjct: 23538597 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 23538656

                                                                            
Query: 342      cggcgagaagctcatccccaatcttcaccaacctatccaagttggccttggagcagtcgt 401
                 | ||||||||   ||||||||||||||||   |||||| |||  |||||||||||||||
Sbjct: 23538657 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 23538716

                                
Query: 402      cgatggagcccgcact 417
                |||| |||||||||||
Sbjct: 23538717 cgatcgagcccgcact 23538732



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                              
Query: 552      ccttgacgagccagctcaagatgccccacttggcggcgtccttggc 597
                |||||| ||||||| | ||||| ||||||||||| |||||||||||
Sbjct: 23539315 ccttgatgagccagttgaagattccccacttggcagcgtccttggc 23539360



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 352      ctcatccccaatcttcaccaa 372
                |||||||||||||||||||||
Sbjct: 26302374 ctcatccccaatcttcaccaa 26302394

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>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1666_A04
          Length = 90097

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 158/196 (80%)
 Strand = Plus / Plus

                                                                         
Query: 222   ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcctccgcgtttg 281
             |||| ||||| ||||| |||||||||||| ||||| ||||||| ||||  ||   ||| |
Sbjct: 18312 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 18371

                                                                         
Query: 282   tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 341
             ||||| | |||| ||| ||||| |   |||||||||||||||| || |  || || ||||
Sbjct: 18372 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 18431

                                                                         
Query: 342   cggcgagaagctcatccccaatcttcaccaacctatccaagttggccttggagcagtcgt 401
              | ||||||||   ||||||||||||||||   |||||| |||  |||||||||||||||
Sbjct: 18432 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 18491

                             
Query: 402   cgatggagcccgcact 417
             |||| |||||||||||
Sbjct: 18492 cgatcgagcccgcact 18507



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 552   ccttgacgagccagctcaagatgccccacttggcggcgtccttggc 597
             |||||| ||||||| | ||||| ||||||||||| |||||||||||
Sbjct: 19090 ccttgatgagccagttgaagattccccacttggcagcgtccttggc 19135

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>gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster
          Length = 162249

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 491   tggaagtcgaccatgtcggcgctggcg 517
             |||| ||||||||||||||||||||||
Sbjct: 73766 tggatgtcgaccatgtcggcgctggcg 73740

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>ref|XM_477103.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2292

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 507  cggcgctggcggcgttgaacatgtcgagga 536
            |||||| | |||||||||||||||||||||
Sbjct: 2077 cggcgccgccggcgttgaacatgtcgagga 2048

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 507     cggcgctggcggcgttgaacatgtcgagga 536
               |||||| | |||||||||||||||||||||
Sbjct: 5923248 cggcgccgccggcgttgaacatgtcgagga 5923277

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 469     gatggcggagaggacggagagg 490
               ||||||||||||||||||||||
Sbjct: 3671790 gatggcggagaggacggagagg 3671811

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>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_A05
          Length = 120823

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 507   cggcgctggcggcgttgaacatgtcgagga 536
             |||||| | |||||||||||||||||||||
Sbjct: 65696 cggcgccgccggcgttgaacatgtcgagga 65725

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>dbj|AK120944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N02, full
            insert sequence
          Length = 2827

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 507  cggcgctggcggcgttgaacatgtcgagga 536
            |||||| | |||||||||||||||||||||
Sbjct: 2307 cggcgccgccggcgttgaacatgtcgagga 2278

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 620   gatgatgtcccgcagccgatgg 641
             ||||||||||||||||||||||
Sbjct: 36089 gatgatgtcccgcagccgatgg 36068

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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 580     cttggcggcgtccttggcgctgtac 604
               |||| ||||||||||||||||||||
Sbjct: 2306056 cttgccggcgtccttggcgctgtac 2306080

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>ref|XM_362484.1| Magnaporthe grisea 70-15 hypothetical protein (MG08067.4) partial
            mRNA
          Length = 3513

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 580  cttggcggcgtccttggcgct 600
            |||||||||||||||||||||
Sbjct: 3393 cttggcggcgtccttggcgct 3373

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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 580     cttggcggcgtccttggcgctgtac 604
               |||| ||||||||||||||||||||
Sbjct: 1378525 cttgccggcgtccttggcgctgtac 1378549

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>gb|AC145802.2| Xenopus tropicalis clone CH216-80C17, complete sequence
          Length = 163910

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    aagcacatattatatgtgcta 60
             |||||||||||||||||||||
Sbjct: 98064 aagcacatattatatgtgcta 98084

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>ref|XM_381054.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00878.1)
           partial mRNA
          Length = 717

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 585 cggcgtccttggcgctgtacttgag 609
           |||||||||||||| ||||||||||
Sbjct: 331 cggcgtccttggcgatgtacttgag 307

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>ref|XM_860065.1| PREDICTED: Canis familiaris similar to N-ethylmaleimide sensitive
           fusion protein attachment protein alpha, transcript
           variant 3 (LOC612960), mRNA
          Length = 1379

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 gtccttggcgctgtacttgag 609
           |||||||||||||||||||||
Sbjct: 434 gtccttggcgctgtacttgag 414

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>ref|XM_847061.1| PREDICTED: Canis familiaris similar to N-ethylmaleimide sensitive
           fusion protein attachment protein alpha, transcript
           variant 1 (LOC612960), mRNA
          Length = 1688

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 gtccttggcgctgtacttgag 609
           |||||||||||||||||||||
Sbjct: 743 gtccttggcgctgtacttgag 723

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>emb|AL606754.6| Human DNA sequence from clone RP11-479E16 on chromosome X Contains the
             3' end of the gene for a novel protein (FLJ31204),
             complete sequence
          Length = 106636

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 36    tataaagcacatattatatgt 56
             |||||||||||||||||||||
Sbjct: 54287 tataaagcacatattatatgt 54307

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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 580     cttggcggcgtccttggcgctgtac 604
               |||| ||||||||||||||||||||
Sbjct: 1250449 cttgccggcgtccttggcgctgtac 1250473

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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 218     ttacggcgtcggcggcgctca 238
               |||||||||||||||||||||
Sbjct: 4049712 ttacggcgtcggcggcgctca 4049692

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 466      gaggatggcggagaggacggagagg 490
                |||| ||||||||||||||||||||
Sbjct: 11442192 gagggtggcggagaggacggagagg 11442168

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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 309     ggccggtctccaggtccaccc 329
               |||||||||||||||||||||
Sbjct: 1129003 ggccggtctccaggtccaccc 1129023

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>dbj|AP003567.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0022N24
          Length = 124062

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 466   gaggatggcggagaggacggagagg 490
             |||| ||||||||||||||||||||
Sbjct: 79390 gagggtggcggagaggacggagagg 79366

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>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1770_H02
          Length = 170648

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 352   ctcatccccaatcttcaccaa 372
             |||||||||||||||||||||
Sbjct: 31955 ctcatccccaatcttcaccaa 31975

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>emb|AJ007559.1|CRE7559 Chlamydomonas reinhardtii mRNA for 1-deoxy-D-xylulose-5-phosphate
            synthase, partial
          Length = 3232

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 579  acttggcggcgtccttggcgc 599
            |||||||||||||||||||||
Sbjct: 2316 acttggcggcgtccttggcgc 2296

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>ref|XM_566224.1| Anopheles gambiae str. PEST ENSANGP00000026283 (ENSANGG00000016941),
            partial mRNA
          Length = 1459

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 255  cgtacttggcgagctcctccgcgtt 279
            |||||||||| ||||||||||||||
Sbjct: 1264 cgtacttggccagctcctccgcgtt 1240

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>ref|XM_310956.2| Anopheles gambiae str. PEST ENSANGP00000019430 (ENSANGG00000016941),
            mRNA
          Length = 1731

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 255  cgtacttggcgagctcctccgcgtt 279
            |||||||||| ||||||||||||||
Sbjct: 1536 cgtacttggccagctcctccgcgtt 1512

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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 309    ggccggtctccaggtccaccc 329
              |||||||||||||||||||||
Sbjct: 802362 ggccggtctccaggtccaccc 802382

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>gb|AC152976.1| Mus musculus  BAC RP23-103K17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 194151

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    catataaagcacatattata 53
             ||||||||||||||||||||
Sbjct: 70465 catataaagcacatattata 70446

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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 516     cggcgttgaacatgtcgagg 535
               ||||||||||||||||||||
Sbjct: 2299749 cggcgttgaacatgtcgagg 2299730

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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    cggcgtcggcggcgctcatc 240
              ||||||||||||||||||||
Sbjct: 113747 cggcgtcggcggcgctcatc 113766

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>gb|AC115767.14| Mus musculus chromosome 6, clone RP23-83K15, complete sequence
          Length = 257790

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     catataaagcacatattata 53
              ||||||||||||||||||||
Sbjct: 255591 catataaagcacatattata 255610

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>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0094K23, complete sequence
          Length = 167482

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   gaggagccgaggatggcgga 477
             ||||||||||||||||||||
Sbjct: 34256 gaggagccgaggatggcgga 34237

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>gb|AC102668.12| Mus musculus chromosome 6, clone RP23-296I18, complete sequence
          Length = 186488

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     catataaagcacatattata 53
              ||||||||||||||||||||
Sbjct: 152716 catataaagcacatattata 152697

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>gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome 9, complete sequence
          Length = 203891

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     taatgactcttgcacaagac 81
              ||||||||||||||||||||
Sbjct: 129318 taatgactcttgcacaagac 129337

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>gb|DQ462412.1| Spinibarbus sinensis neuropeptide Y mRNA, complete cds
          Length = 740

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 tacttggcgagctcctccgc 276
           ||||||||||||||||||||
Sbjct: 202 tacttggcgagctcctccgc 183

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>ref|XM_739811.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000210.02.0)
           partial mRNA
          Length = 888

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 43  cacatattatatgtgctaat 62
           ||||||||||||||||||||
Sbjct: 274 cacatattatatgtgctaat 255

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>emb|BX016260.1|CNS08KPK Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA24BE12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 974

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 294 gcacctccacattccggccggtct 317
           ||||||||||||||| ||||||||
Sbjct: 310 gcacctccacattcccgccggtct 287

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>emb|BX119976.8| Zebrafish DNA sequence from clone CH211-196F5 in linkage group 20
             Contains the gene for a novel protein (zgc:63952), the 3'
             end of the gene for a novel protein similar to mouse and
             human importin 4 (IPO4), three genes for transposase, a
             novel gene and six CpG islands, complete sequence
          Length = 190000

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 185   caattgctagtttggtttgaggca 208
             |||||||| |||||||||||||||
Sbjct: 60892 caattgctggtttggtttgaggca 60869

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>emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in linkage group 19,
             complete sequence
          Length = 147881

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   tacttggcgagctcctccgc 276
             ||||||||||||||||||||
Sbjct: 57178 tacttggcgagctcctccgc 57197

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>gb|AC107960.3| Homo sapiens chromosome 8, clone RP11-983C19, complete sequence
          Length = 180854

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   ttgaacacatacattaaact 178
             ||||||||||||||||||||
Sbjct: 37889 ttgaacacatacattaaact 37870

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>gb|AC107870.6| Homo sapiens chromosome 8, clone CTC-777N14, complete sequence
          Length = 73460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   ttgaacacatacattaaact 178
             ||||||||||||||||||||
Sbjct: 50721 ttgaacacatacattaaact 50702

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>gb|AC099818.2| Homo sapiens chromosome 8, clone RP11-99I9, complete sequence
          Length = 160046

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    ttgaacacatacattaaact 178
              ||||||||||||||||||||
Sbjct: 151905 ttgaacacatacattaaact 151886

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>gb|DQ380626.1| Environmental sequence clone W1-9 arsenite oxidase Mo-pterin
           subunit (aoxB) gene, partial cds
          Length = 483

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 497 tcgaccatgtcggcgctggcggcg 520
           ||||||||| ||||||||||||||
Sbjct: 395 tcgaccatggcggcgctggcggcg 418

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>gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, complete sequence
          Length = 191499

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aaaacaaataagagatacca 24
             ||||||||||||||||||||
Sbjct: 25461 aaaacaaataagagatacca 25442

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>gb|AC098657.2| Homo sapiens chromosome 1 clone RP11-339A11, complete sequence
          Length = 158859

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aaaacaaataagagatacca 24
             ||||||||||||||||||||
Sbjct: 66739 aaaacaaataagagatacca 66720

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>ref|NM_131074.1| Danio rerio neuropeptide Y (npy), mRNA
          Length = 1033

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 tacttggcgagctcctccgc 276
           ||||||||||||||||||||
Sbjct: 204 tacttggcgagctcctccgc 185

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 287     ccaccgggcacctccacattccggccgg 314
               |||||||||| ||| |||||||||||||
Sbjct: 3069891 ccaccgggcagctcgacattccggccgg 3069864

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 458      gaggagccgaggatggcgga 477
                ||||||||||||||||||||
Sbjct: 19438849 gaggagccgaggatggcgga 19438830

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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 334     caccttctcggcgagaagct 353
               ||||||||||||||||||||
Sbjct: 1880735 caccttctcggcgagaagct 1880754

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>gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence
          Length = 193317

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    ataattaaatcaaacaaaca 125
              ||||||||||||||||||||
Sbjct: 124975 ataattaaatcaaacaaaca 124994

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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 497   tcgaccatgtcggcgctggc 516
             ||||||||||||||||||||
Sbjct: 53880 tcgaccatgtcggcgctggc 53899

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>gb|AF287347.1|AF287347 Cyprinus carpio neuropeptide Y mRNA, complete cds
          Length = 730

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 tacttggcgagctcctccgc 276
           ||||||||||||||||||||
Sbjct: 211 tacttggcgagctcctccgc 192

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>gb|AF233874.1|AF233874 Danio rerio neuropeptide Y precursor gene, complete cds
          Length = 2987

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 tacttggcgagctcctccgc 276
           ||||||||||||||||||||
Sbjct: 879 tacttggcgagctcctccgc 860

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>emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 in linkage group 20,
             complete sequence
          Length = 73842

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    tataaagcacatattatatg 55
             ||||||||||||||||||||
Sbjct: 27565 tataaagcacatattatatg 27584

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>gb|AE005103.1| Halobacterium sp. NRC-1 section 134 of 170 of the complete genome
          Length = 11252

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 507 cggcgctggcggcgttgaac 526
           ||||||||||||||||||||
Sbjct: 867 cggcgctggcggcgttgaac 886

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>emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in linkage group 19, complete
              sequence
          Length = 255824

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    tacttggcgagctcctccgc 276
              ||||||||||||||||||||
Sbjct: 226591 tacttggcgagctcctccgc 226610

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>emb|BX510657.9| Zebrafish DNA sequence from clone CH211-142K18 in linkage group 20,
             complete sequence
          Length = 163967

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    ttttcatgtcatataaagca 44
             ||||||||||||||||||||
Sbjct: 59860 ttttcatgtcatataaagca 59879

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>dbj|AP005661.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1182F3, complete
             sequence
          Length = 151887

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   ttgaacacatacattaaact 178
             ||||||||||||||||||||
Sbjct: 81263 ttgaacacatacattaaact 81244

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>gb|M87297.1|CRANPY Carassius auratus neuropeptide Y mRNA, complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 tacttggcgagctcctccgc 276
           ||||||||||||||||||||
Sbjct: 190 tacttggcgagctcctccgc 171


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,285,789
Number of Sequences: 3902068
Number of extensions: 5285789
Number of successful extensions: 120895
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119592
Number of HSP's gapped (non-prelim): 1300
length of query: 664
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 641
effective length of database: 17,143,297,704
effective search space: 10988853828264
effective search space used: 10988853828264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result