Clone Name | rbasd18g17 |
---|---|
Clone Library Name | barley_pub |
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 92.0 bits (227), Expect = 1e-18 Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 9/141 (6%) Frame = -3 Query: 614 PVGCFPIYLTLYQTSNAGDYDQYGCLKRFNALSSRHNSLLQSKVTSLQSKYPYAKIMYAD 435 P+GC + + + A D+D +GC+ N L+ + N L+ V L+S A I Y D Sbjct: 221 PIGCLAYVIERFP-NKASDFDSHGCVSPLNHLAQQFNHALKQAVIELRSSLSEAAITYVD 279 Query: 434 FYSHVFDMVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSG---------ASACGNP 282 YS ++ +GF +L +CCG GGKYNY G CGM C P Sbjct: 280 VYSLKHELFVHAQGHGFKGSLVSCCG-HGGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEP 338 Query: 281 SSSLSWDGIHLTEAAYKKIAD 219 ++ WDG+H T+AA K I D Sbjct: 339 DKAVVWDGVHFTQAANKFIFD 359
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 85.5 bits (210), Expect = 1e-16 Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 9/153 (5%) Frame = -3 Query: 614 PVGCFPIYLTLYQTSNAGDYDQYGCLKRFNALSSRHNSLLQSKVTSLQSKYPYAKIMYAD 435 P+GC LT + + + D GC K +N ++ N L+ V L+ P A ++ D Sbjct: 225 PIGCLSFILTYFPWA---EKDSAGCAKAYNEVAQHFNHKLKEIVAQLRKDLPLATFVHVD 281 Query: 434 FYSHVFDMVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSGAS---------ACGNP 282 YS + + P +GF L CCG GGKYN+ A CG + + +C P Sbjct: 282 IYSVKYSLFSEPEKHGFEFPLITCCGY-GGKYNFSVTAPCGDTVTADDGTKIVVGSCACP 340 Query: 281 SSSLSWDGIHLTEAAYKKIADGWVNGPYCHPAI 183 S ++WDG H TEAA + D G + P + Sbjct: 341 SVRVNWDGAHYTEAANEYFFDQISTGAFSDPPV 373
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 70.5 bits (171), Expect = 4e-12 Identities = 38/106 (35%), Positives = 52/106 (49%) Frame = -3 Query: 542 CLKRFNALSSRHNSLLQSKVTSLQSKYPYAKIMYADFYSHVFDMVKSPASYGFSTNLRAC 363 C + N S NS L + L P + +Y D Y+ + M+++PA+YGF + C Sbjct: 419 CNEELNYASQLFNSKLLLILGQLSKTLPNSTFVYMDIYTIISQMLETPAAYGFEETKKPC 478 Query: 362 CGAGGGKYNYQNGARCGMSGASACGNPSSSLSWDGIHLTEAAYKKI 225 C G GA C S + C N SS L WDG+H T+ AYK I Sbjct: 479 CKTG----LLSAGALCKKSTSKICPNTSSYLFWDGVHPTQRAYKTI 520
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 56.6 bits (135), Expect = 6e-08 Identities = 39/131 (29%), Positives = 53/131 (40%) Frame = -3 Query: 623 GVLPVGCFPIYLTLYQTSNAGDYDQYGCLKRFNALSSRHNSLLQSKVTSLQSKYPYAKIM 444 G P+GC P + C + N + NS L + L P + I+ Sbjct: 318 GTPPIGCTPSQRVKKKKI---------CNEDLNYAAQLFNSKLVIILGQLSKTLPNSTIV 368 Query: 443 YADFYSHVFDMVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSGASACGNPSSSLSW 264 Y D YS M++SP YGF + CC G K G C N SS L W Sbjct: 369 YGDIYSIFSKMLESPEDYGFEEIKKPCCKIGLTK----GGVFCKERTLKNMSNASSYLFW 424 Query: 263 DGIHLTEAAYK 231 DG+H ++ AY+ Sbjct: 425 DGLHPSQRAYE 435
>DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 630 Score = 34.3 bits (77), Expect = 0.31 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Frame = -3 Query: 416 DMVKSPASYG---FSTNLRACCGAGGGKYNYQNGARCGMSG----ASACGNPSSSLSW 264 D K SYG S+N +GGG + NG G SG +S+ GNPS+S SW Sbjct: 572 DFRKQGGSYGGGASSSNWGGSSSSGGGWGSSNNGGYSGYSGRSNGSSSYGNPSASNSW 629
>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)| (Endo-1,4-beta-glucanase) (Cellulase) (Fragment) Length = 224 Score = 34.3 bits (77), Expect = 0.31 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = -3 Query: 281 SSSLSWDGIHLTEAAYKKIADGW 213 ++ +SWDG+HL+E Y KIA+ W Sbjct: 111 NTDISWDGLHLSEIGYTKIANIW 133
>RPC1_GIALA (P25202) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)| Length = 1741 Score = 31.6 bits (70), Expect = 2.0 Identities = 37/145 (25%), Positives = 51/145 (35%), Gaps = 11/145 (7%) Frame = -3 Query: 617 LPVGCFPIYLTLYQTS-------NAGDYDQYGCL-KRFNALSSRHNSLLQSKVTSLQSKY 462 L G FP+ L Y+ N Y Q CL +R N S S+L T+ Sbjct: 1193 LAEGAFPVLLDRYKAEAELDVLLNKDFYGQEACLIERSNVTSYFQQSILPKLTTNTHIAT 1252 Query: 461 PYAKIMYADFYSHVFDMVKSPASYGFSTNLRACCGAGGGKY---NYQNGARCGMSGASAC 291 A + A F + K F +R KY N + G+ CG A + Sbjct: 1253 TVAPALAASFLQTT--LTKKDID-DFLRQVRR-------KYIRLNLEPGSPCGAVAAQSV 1302 Query: 290 GNPSSSLSWDGIHLTEAAYKKIADG 216 G PS+ ++ H A I G Sbjct: 1303 GEPSTQMTLKSFHHAGLASMNITQG 1327
>PHCA2_FREDI (P08040) C-phycocyanin-2 alpha chain| Length = 162 Score = 30.4 bits (67), Expect = 4.4 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = -3 Query: 524 ALSSRHNSLLQSKVTSLQSKYPYAKIMYA-DFYSHVFDMVKSPASYGFSTNLRACCGAGG 348 ALSS+ NSL Q V ++ K+PY M +F S K G+ + C G Sbjct: 43 ALSSKANSLAQGAVNAVYQKFPYTTQMQGKNFASDQRGKDKCARDIGYYIRIVTYCLVAG 102 Query: 347 G 345 G Sbjct: 103 G 103
>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT| transcription complex cytosolic component) (NF-ATc1) (NF-ATc) Length = 943 Score = 30.0 bits (66), Expect = 5.8 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 2/96 (2%) Frame = -3 Query: 557 YDQYGCLKRFNALSSRHNSLLQSKVTSLQSKY--PYAKIMYADFYSHVFDMVKSPASYGF 384 Y CL ++LSSR S+ +S +S Y PYA + + S + GF Sbjct: 165 YRDPSCLSPASSLSSRS---CNSEASSYESNYSYPYASPQTSPWQSPCVSPKTTDPEEGF 221 Query: 383 STNLRACCGAGGGKYNYQNGARCGMSGASACGNPSS 276 L AC G +++ R ++ S G SS Sbjct: 222 PRGLGACTLLGSPRHSPSTSPRASVTEESWLGARSS 257
>P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor p53)| Length = 381 Score = 29.3 bits (64), Expect = 9.9 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = +1 Query: 226 IFLYAASVRWMPSQLSDDDGLPHADAPDMPHRAPFW*LYLPPPAPQ 363 + L + V W+ D +P AP P AP W L P+P+ Sbjct: 43 LLLPESVVNWLDEDSDDAPRMPATSAPTAPGPAPSWPLSSSVPSPK 88
>ILF3_HUMAN (Q12906) Interleukin enhancer-binding factor 3 (Nuclear factor of| activated T-cells 90 kDa) (NF-AT-90) (Double-stranded RNA-binding protein 76) (DRBP76) (Translational control protein 80) (TCP80) (Nuclear factor associated with dsRNA) (NFAR) ( Length = 894 Score = 29.3 bits (64), Expect = 9.9 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 395 SYGFSTNLRACCGAGGGKYNYQNGARCGMSGASACGNPSSS 273 SY +S + + G GG YNY++ SG + GN S Sbjct: 783 SYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGS 823 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,025,486 Number of Sequences: 219361 Number of extensions: 1383598 Number of successful extensions: 4293 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4061 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4278 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)