ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18g17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 92 1e-18
2EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 86 1e-16
3APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 70 4e-12
4APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 57 6e-08
5DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-) 34 0.31
6GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX) ... 34 0.31
7RPC1_GIALA (P25202) DNA-directed RNA polymerase III largest subu... 32 2.0
8PHCA2_FREDI (P08040) C-phycocyanin-2 alpha chain 30 4.4
9NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytopl... 30 5.8
10P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor ... 29 9.9
11ILF3_HUMAN (Q12906) Interleukin enhancer-binding factor 3 (Nucle... 29 9.9

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
 Frame = -3

Query: 614 PVGCFPIYLTLYQTSNAGDYDQYGCLKRFNALSSRHNSLLQSKVTSLQSKYPYAKIMYAD 435
           P+GC    +  +  + A D+D +GC+   N L+ + N  L+  V  L+S    A I Y D
Sbjct: 221 PIGCLAYVIERFP-NKASDFDSHGCVSPLNHLAQQFNHALKQAVIELRSSLSEAAITYVD 279

Query: 434 FYSHVFDMVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSG---------ASACGNP 282
            YS   ++      +GF  +L +CCG  GGKYNY  G  CGM              C  P
Sbjct: 280 VYSLKHELFVHAQGHGFKGSLVSCCG-HGGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEP 338

Query: 281 SSSLSWDGIHLTEAAYKKIAD 219
             ++ WDG+H T+AA K I D
Sbjct: 339 DKAVVWDGVHFTQAANKFIFD 359



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
 Frame = -3

Query: 614 PVGCFPIYLTLYQTSNAGDYDQYGCLKRFNALSSRHNSLLQSKVTSLQSKYPYAKIMYAD 435
           P+GC    LT +  +   + D  GC K +N ++   N  L+  V  L+   P A  ++ D
Sbjct: 225 PIGCLSFILTYFPWA---EKDSAGCAKAYNEVAQHFNHKLKEIVAQLRKDLPLATFVHVD 281

Query: 434 FYSHVFDMVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSGAS---------ACGNP 282
            YS  + +   P  +GF   L  CCG  GGKYN+   A CG +  +         +C  P
Sbjct: 282 IYSVKYSLFSEPEKHGFEFPLITCCGY-GGKYNFSVTAPCGDTVTADDGTKIVVGSCACP 340

Query: 281 SSSLSWDGIHLTEAAYKKIADGWVNGPYCHPAI 183
           S  ++WDG H TEAA +   D    G +  P +
Sbjct: 341 SVRVNWDGAHYTEAANEYFFDQISTGAFSDPPV 373



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 38/106 (35%), Positives = 52/106 (49%)
 Frame = -3

Query: 542 CLKRFNALSSRHNSLLQSKVTSLQSKYPYAKIMYADFYSHVFDMVKSPASYGFSTNLRAC 363
           C +  N  S   NS L   +  L    P +  +Y D Y+ +  M+++PA+YGF    + C
Sbjct: 419 CNEELNYASQLFNSKLLLILGQLSKTLPNSTFVYMDIYTIISQMLETPAAYGFEETKKPC 478

Query: 362 CGAGGGKYNYQNGARCGMSGASACGNPSSSLSWDGIHLTEAAYKKI 225
           C  G        GA C  S +  C N SS L WDG+H T+ AYK I
Sbjct: 479 CKTG----LLSAGALCKKSTSKICPNTSSYLFWDGVHPTQRAYKTI 520



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 39/131 (29%), Positives = 53/131 (40%)
 Frame = -3

Query: 623 GVLPVGCFPIYLTLYQTSNAGDYDQYGCLKRFNALSSRHNSLLQSKVTSLQSKYPYAKIM 444
           G  P+GC P      +           C +  N  +   NS L   +  L    P + I+
Sbjct: 318 GTPPIGCTPSQRVKKKKI---------CNEDLNYAAQLFNSKLVIILGQLSKTLPNSTIV 368

Query: 443 YADFYSHVFDMVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSGASACGNPSSSLSW 264
           Y D YS    M++SP  YGF    + CC  G  K     G  C         N SS L W
Sbjct: 369 YGDIYSIFSKMLESPEDYGFEEIKKPCCKIGLTK----GGVFCKERTLKNMSNASSYLFW 424

Query: 263 DGIHLTEAAYK 231
           DG+H ++ AY+
Sbjct: 425 DGLHPSQRAYE 435



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>DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 630

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = -3

Query: 416 DMVKSPASYG---FSTNLRACCGAGGGKYNYQNGARCGMSG----ASACGNPSSSLSW 264
           D  K   SYG    S+N      +GGG  +  NG   G SG    +S+ GNPS+S SW
Sbjct: 572 DFRKQGGSYGGGASSSNWGGSSSSGGGWGSSNNGGYSGYSGRSNGSSSYGNPSASNSW 629



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>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)|
           (Endo-1,4-beta-glucanase) (Cellulase) (Fragment)
          Length = 224

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -3

Query: 281 SSSLSWDGIHLTEAAYKKIADGW 213
           ++ +SWDG+HL+E  Y KIA+ W
Sbjct: 111 NTDISWDGLHLSEIGYTKIANIW 133



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>RPC1_GIALA (P25202) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)|
          Length = 1741

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 37/145 (25%), Positives = 51/145 (35%), Gaps = 11/145 (7%)
 Frame = -3

Query: 617  LPVGCFPIYLTLYQTS-------NAGDYDQYGCL-KRFNALSSRHNSLLQSKVTSLQSKY 462
            L  G FP+ L  Y+         N   Y Q  CL +R N  S    S+L    T+     
Sbjct: 1193 LAEGAFPVLLDRYKAEAELDVLLNKDFYGQEACLIERSNVTSYFQQSILPKLTTNTHIAT 1252

Query: 461  PYAKIMYADFYSHVFDMVKSPASYGFSTNLRACCGAGGGKY---NYQNGARCGMSGASAC 291
              A  + A F      + K      F   +R        KY   N + G+ CG   A + 
Sbjct: 1253 TVAPALAASFLQTT--LTKKDID-DFLRQVRR-------KYIRLNLEPGSPCGAVAAQSV 1302

Query: 290  GNPSSSLSWDGIHLTEAAYKKIADG 216
            G PS+ ++    H    A   I  G
Sbjct: 1303 GEPSTQMTLKSFHHAGLASMNITQG 1327



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>PHCA2_FREDI (P08040) C-phycocyanin-2 alpha chain|
          Length = 162

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -3

Query: 524 ALSSRHNSLLQSKVTSLQSKYPYAKIMYA-DFYSHVFDMVKSPASYGFSTNLRACCGAGG 348
           ALSS+ NSL Q  V ++  K+PY   M   +F S      K     G+   +   C   G
Sbjct: 43  ALSSKANSLAQGAVNAVYQKFPYTTQMQGKNFASDQRGKDKCARDIGYYIRIVTYCLVAG 102

Query: 347 G 345
           G
Sbjct: 103 G 103



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>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc)
          Length = 943

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
 Frame = -3

Query: 557 YDQYGCLKRFNALSSRHNSLLQSKVTSLQSKY--PYAKIMYADFYSHVFDMVKSPASYGF 384
           Y    CL   ++LSSR      S+ +S +S Y  PYA    + + S       +    GF
Sbjct: 165 YRDPSCLSPASSLSSRS---CNSEASSYESNYSYPYASPQTSPWQSPCVSPKTTDPEEGF 221

Query: 383 STNLRACCGAGGGKYNYQNGARCGMSGASACGNPSS 276
              L AC   G  +++     R  ++  S  G  SS
Sbjct: 222 PRGLGACTLLGSPRHSPSTSPRASVTEESWLGARSS 257



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>P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 381

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 226 IFLYAASVRWMPSQLSDDDGLPHADAPDMPHRAPFW*LYLPPPAPQ 363
           + L  + V W+     D   +P   AP  P  AP W L    P+P+
Sbjct: 43  LLLPESVVNWLDEDSDDAPRMPATSAPTAPGPAPSWPLSSSVPSPK 88



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>ILF3_HUMAN (Q12906) Interleukin enhancer-binding factor 3 (Nuclear factor of|
           activated T-cells 90 kDa) (NF-AT-90) (Double-stranded
           RNA-binding protein 76) (DRBP76) (Translational control
           protein 80) (TCP80) (Nuclear factor associated with
           dsRNA) (NFAR) (
          Length = 894

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 395 SYGFSTNLRACCGAGGGKYNYQNGARCGMSGASACGNPSSS 273
           SY +S +  +  G GG  YNY++      SG  + GN   S
Sbjct: 783 SYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGS 823


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,025,486
Number of Sequences: 219361
Number of extensions: 1383598
Number of successful extensions: 4293
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4278
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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