ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18g15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1REPS1_MOUSE (O54916) RalBP1-associated Eps domain-containing pro... 37 0.067
2PUR9_RHIME (Q92KX6) Bifunctional purine biosynthesis protein pur... 32 2.2
3FADB_ACIAD (Q6FF68) Fatty oxidation complex alpha subunit [Inclu... 30 6.3
4REPS1_HUMAN (Q96D71) RalBP1-associated Eps domain-containing pro... 30 8.2

>REPS1_MOUSE (O54916) RalBP1-associated Eps domain-containing protein 1|
           (RalBP1-interacting protein 1)
          Length = 743

 Score = 36.6 bits (83), Expect = 0.067
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
 Frame = +2

Query: 296 ALIHKAPLRCPPAQIHLEAQWRLPSSQDHKRP*TQL*ALSSLLPHRHN-------PSSST 454
           A++H  P+R  P++IH++      +S DH  P + L    S L   +        PS +T
Sbjct: 397 AIVHPVPIRMTPSKIHMQEMELKRTSSDHTNPTSPLLVKPSDLSEENKINSSVKFPSGNT 456

Query: 455 LNSIQMAYQHPSDHQRI 505
           ++    +   PSD ++I
Sbjct: 457 VDGYSSSDSFPSDPEQI 473



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>PUR9_RHIME (Q92KX6) Bifunctional purine biosynthesis protein purH [Includes:|
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)]
          Length = 536

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 213 AWACDSDGASGASLGIDEKLSAETEGHASKLSRISFLAPIVS 88
           A ACDS  A G  + ++++L AET     KL     +AP VS
Sbjct: 307 ALACDSTSAFGGIIALNQELDAETAEEIVKLFTEVIIAPSVS 348



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>FADB_ACIAD (Q6FF68) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA|
           hydratase (EC 4.2.1.17);
           Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC
           5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35);
           3-hydroxybutyryl-CoA epimerase (EC 5.1.2.
          Length = 717

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 21/51 (41%), Positives = 23/51 (45%)
 Frame = -3

Query: 186 SGASLGIDEKLSAETEGHASKLSRISFLAPIVSAPVGLVALLLATPSIKST 34
           +GASLG DE L  ETEG A         A I      L+ L L    IK T
Sbjct: 262 AGASLGRDEALKVETEGFAK--------AAITPQAEALIGLFLNDQIIKKT 304



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>REPS1_HUMAN (Q96D71) RalBP1-associated Eps domain-containing protein 1|
           (RalBP1-interacting protein 1)
          Length = 744

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 296 ALIHKAPLRCPPAQIHLEAQWRLPSSQDHKRP*TQL*ALSSLLPHRHNPSSS 451
           A++H  P+R  P++IH++      +  DH  P + L    S L   +  +SS
Sbjct: 397 AIVHPVPIRMTPSKIHMQEMELKRTGSDHTNPTSPLLVKPSDLLEENKINSS 448


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,250,095
Number of Sequences: 219361
Number of extensions: 1947439
Number of successful extensions: 5385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5384
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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