ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18g15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 568 ccattatctgtaggattaatcatgcagaagcagctgacc 606 |||||||| |||||||||||| |||||| ||||||||| Sbjct: 24403972 ccattatcaataggattaatcacgcagaaacagctgacc 24403934 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 acaaattcatttggaggcac 353 |||||||||||||||||||| Sbjct: 26233598 acaaattcatttggaggcac 26233617 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 467 caaatggcataccaacatccaagtgaccacca 498 |||||||| |||| | |||||||||||||||| Sbjct: 24443596 caaatggcctacccatatccaagtgaccacca 24443565
>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1142B04 Length = 161964 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 568 ccattatctgtaggattaatcatgcagaagcagctgacc 606 |||||||| |||||||||||| |||||| ||||||||| Sbjct: 19688 ccattatcaataggattaatcacgcagaaacagctgacc 19650 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 467 caaatggcataccaacatccaagtgaccacca 498 |||||||| |||| | |||||||||||||||| Sbjct: 59312 caaatggcctacccatatccaagtgaccacca 59281
>dbj|AK065332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000K10, full insert sequence Length = 1792 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 568 ccattatctgtaggattaatcatgcagaagcagctgacc 606 |||||||| |||||||||||| |||||| ||||||||| Sbjct: 1233 ccattatcaataggattaatcacgcagaaacagctgacc 1195
>gb|AC133936.5| Mus musculus BAC clone RP24-399H1 from chromosome 6, complete sequence Length = 177971 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 401 ctctgagctctttcttctttgcttcc 426 ||||||||||| |||||||||||||| Sbjct: 128488 ctctgagctctgtcttctttgcttcc 128463
>ref|XM_415577.1| PREDICTED: Gallus gallus similar to growth arrest-specific 7-cb protein (LOC417305), mRNA Length = 1257 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 435 ataatcccagtagctccactctgaa 459 |||||| |||||||||||||||||| Sbjct: 231 ataatcacagtagctccactctgaa 207
>ref|XM_958697.1| Neurospora crassa OR74A hypothetical protein (NCU03068.1) partial mRNA Length = 663 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 314 cctctccgctgccctccggcacaaa 338 |||||||||||| |||||||||||| Sbjct: 616 cctctccgctgctctccggcacaaa 592
>ref|XM_330503.1| Neurospora crassa OR74A hypothetical protein (NCU03068.1) partial mRNA Length = 663 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 314 cctctccgctgccctccggcacaaa 338 |||||||||||| |||||||||||| Sbjct: 616 cctctccgctgctctccggcacaaa 592
>gb|AE009279.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 49 of 187 of the complete sequence Length = 12141 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 588 catgcagaagcagctgaccga 608 ||||||||||||||||||||| Sbjct: 10342 catgcagaagcagctgaccga 10322
>gb|AE008333.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 137 of 187 of the complete sequence Length = 10241 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 588 catgcagaagcagctgaccga 608 ||||||||||||||||||||| Sbjct: 2001 catgcagaagcagctgaccga 2021
>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete sequence Length = 190553 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 ccagctctctggctctcatac 305 ||||||||||||||||||||| Sbjct: 21880 ccagctctctggctctcatac 21860
>gb|AY814505.1| Schistosoma japonicum SJCHGC06326 protein mRNA, complete cds Length = 1535 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 ctctggctctcatacacaaag 311 ||||||||||||||||||||| Sbjct: 435 ctctggctctcatacacaaag 455
>gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome 7, complete sequence Length = 265770 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 ccagctctctggctctcatac 305 ||||||||||||||||||||| Sbjct: 45325 ccagctctctggctctcatac 45345
>emb|AL772195.4| Mouse DNA sequence from clone RP23-218C5 on chromosome 11 Contains the 5' end of the Ugp2 gene for UDP-glucose pyrophosphorylase 2, two novel genes, a cytoplasmic dynein light chain 1 (Dnclc1) pseudogene, a RAB5A member RAS oncogene family (Rab5a) pseudogene, a novel pseudogene and a CpG island, complete sequence Length = 173182 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 ccagctctctggctctcatac 305 ||||||||||||||||||||| Sbjct: 61482 ccagctctctggctctcatac 61502
>emb|AL645854.10| Mouse DNA sequence from clone RP23-192P17 on chromosome 11, complete sequence Length = 211829 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 agagtattatgtactctttat 45 ||||||||||||||||||||| Sbjct: 89375 agagtattatgtactctttat 89355
>ref|XM_483137.1| Oryza sativa (japonica cultivar-group), mRNA Length = 651 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 467 caaatggcataccaacatccaagtgaccacca 498 |||||||| |||| | |||||||||||||||| Sbjct: 514 caaatggcctacccatatccaagtgaccacca 483
>ref|NM_197153.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0041P03.14), mRNA Length = 996 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 acatccaagtgaccaccaacgtat 504 |||||||||||||||||| ||||| Sbjct: 755 acatccaagtgaccaccagcgtat 732
>gb|AY431291.1| Aedes aegypti ASAP ID: 34863 NADH dehydrogenase subunit 5 mRNA sequence Length = 1597 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tagctaataataaagcaaca 73 |||||||||||||||||||| Sbjct: 474 tagctaataataaagcaaca 455
>gb|AF352790.1| Chrysomya putoria mitochondrion, complete genome Length = 15837 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 tagctaataataaagcaaca 73 |||||||||||||||||||| Sbjct: 7585 tagctaataataaagcaaca 7604
>gb|AC134786.6| Mus musculus chromosome 15, clone RP24-502A14, complete sequence Length = 179157 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtattatgtactctttatgg 47 |||||||||||||||||||| Sbjct: 67043 gtattatgtactctttatgg 67024
>gb|AC131178.11| Mus musculus chromosome 15, clone RP23-376I10, complete sequence Length = 170753 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 gtattatgtactctttatgg 47 |||||||||||||||||||| Sbjct: 121288 gtattatgtactctttatgg 121307
>gb|AC162303.4| Mus musculus chromosome 15, clone RP23-475N20, complete sequence Length = 181487 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtattatgtactctttatgg 47 |||||||||||||||||||| Sbjct: 163391 gtattatgtactctttatgg 163372
>emb|AL391809.21| Human DNA sequence from clone RP11-47A4 on chromosome 1 Contains the 5' end of the RYR2 gene for ryanodine receptor 2 (cardiac) and three CpG islands, complete sequence Length = 167548 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tattatgtactctttatgga 48 |||||||||||||||||||| Sbjct: 122922 tattatgtactctttatgga 122941
>emb|AL390835.14| Human DNA sequence from clone RP5-1119O21 on chromosome 10 Contains the 5' end of a novel gene and a novel gene, complete sequence Length = 65508 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 attcatttggaggcacagtg 357 |||||||||||||||||||| Sbjct: 50126 attcatttggaggcacagtg 50145
>emb|AL390066.5| Human DNA sequence from clone RP5-1086K13 on chromosome 1 Contains the 5' end of a novel gene, the 3' end of a novel gene, the 3' end of the CD58 gene for CD58 antigen (lymphocyte function-associated antigen 3), a novel gene and the 3' end of a nucleosome assembly protein 1-like 4 (NAP1L4) pseudogene, complete sequence Length = 103611 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 tggaggcacagtggagactt 364 |||||||||||||||||||| Sbjct: 10513 tggaggcacagtggagactt 10494
>emb|AL157716.17| Human DNA sequence from clone RP5-1045M14 on chromosome 1, complete sequence Length = 62311 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 actctgagctctttcttctt 419 |||||||||||||||||||| Sbjct: 56360 actctgagctctttcttctt 56341
>emb|AL034451.26|HS191E19 Human DNA sequence from clone RP1-191E19 on chromosome 6q23.2-24.2, complete sequence Length = 110885 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ctctctggctctcatacaca 308 |||||||||||||||||||| Sbjct: 16269 ctctctggctctcatacaca 16288
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 481 acatccaagtgaccaccaacgtat 504 |||||||||||||||||| ||||| Sbjct: 55345 acatccaagtgaccaccagcgtat 55368
>gb|AC076972.16| Homo sapiens 12 BAC RP11-624G19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161540 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 tttcttctttgcttccacat 430 |||||||||||||||||||| Sbjct: 96076 tttcttctttgcttccacat 96057
>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0058B20 from chromosome 10, complete sequence Length = 156232 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 atggagggagtagctaataataaa 67 ||||||||||||||||||| |||| Sbjct: 31457 atggagggagtagctaatactaaa 31480
>gb|AC182755.1| Gasterosteus aculeatus clone VMRC28-49K03, complete sequence Length = 136793 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ttattatttgctttatctct 254 |||||||||||||||||||| Sbjct: 92651 ttattatttgctttatctct 92632
>gb|AC008218.5| Drosophila melanogaster, chromosome 3R, region 99B-99B, BAC clone BACR10L12, complete sequence Length = 178791 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ttcatttggaggcacagtgg 358 |||||||||||||||||||| Sbjct: 60419 ttcatttggaggcacagtgg 60438
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 acatccaagtgaccaccaacgtat 504 |||||||||||||||||| ||||| Sbjct: 18295425 acatccaagtgaccaccagcgtat 18295402 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 atggagggagtagctaataataaa 67 ||||||||||||||||||| |||| Sbjct: 12889393 atggagggagtagctaatactaaa 12889370
>gb|AC007856.7|AC007856 Drosophila melanogaster, chromosome 3R, region 99B-99B, BAC clone BACR05L03, complete sequence Length = 175124 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ttcatttggaggcacagtgg 358 |||||||||||||||||||| Sbjct: 108602 ttcatttggaggcacagtgg 108621
>gb|AC004904.1|AC004904 Homo sapiens PAC clone RP5-828F13 from 1, complete sequence Length = 126041 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 tggaggcacagtggagactt 364 |||||||||||||||||||| Sbjct: 105680 tggaggcacagtggagactt 105661
>emb|AL683856.10| Mouse DNA sequence from clone RP23-46J2 on chromosome X, complete sequence Length = 224461 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 agtagctaataataaagcaacaag 75 ||||||||||||||||| |||||| Sbjct: 194967 agtagctaataataaagaaacaag 194944
>dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_E06 Length = 112241 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 acaaattcatttggaggcac 353 |||||||||||||||||||| Sbjct: 66523 acaaattcatttggaggcac 66542
>gb|AC006571.12|AC006571 Homo sapiens, clone hRPK.23_A_1, complete sequence Length = 134896 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ctctctggctctcatacaca 308 |||||||||||||||||||| Sbjct: 100180 ctctctggctctcatacaca 100199
>gb|AE003770.2| Drosophila melanogaster chromosome 3R, section 108 of 118 of the complete sequence Length = 224264 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ttcatttggaggcacagtgg 358 |||||||||||||||||||| Sbjct: 92667 ttcatttggaggcacagtgg 92686
>emb|CT030161.10| Mouse DNA sequence from clone RP23-235H10 on chromosome 12, complete sequence Length = 234471 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cagctctctggctctcatac 305 |||||||||||||||||||| Sbjct: 73422 cagctctctggctctcatac 73441
>gb|AC113058.6| Mus musculus chromosome 6, clone RP23-253C24, complete sequence Length = 248761 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 ttattatttgctttatctcttgct 258 |||||||||| ||||||||||||| Sbjct: 215198 ttattatttgttttatctcttgct 215221
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 acatccaagtgaccaccaacgtat 504 |||||||||||||||||| ||||| Sbjct: 18305078 acatccaagtgaccaccagcgtat 18305055 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 atggagggagtagctaataataaa 67 ||||||||||||||||||| |||| Sbjct: 12896733 atggagggagtagctaatactaaa 12896710
>gb|AC004062.1|AC004062 Homo sapiens chromosome 4 clone B316M24 map 4q25, complete sequence Length = 154252 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 ctctttcttctttgcttcca 427 |||||||||||||||||||| Sbjct: 122581 ctctttcttctttgcttcca 122562
>gb|AC153998.2| Mus musculus 6 BAC RP24-278I6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 166019 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 ttattatttgctttatctcttgct 258 |||||||||| ||||||||||||| Sbjct: 119476 ttattatttgttttatctcttgct 119453
>gb|AC134594.5| Mus musculus BAC clone RP23-388B6 from 12, complete sequence Length = 194521 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cagctctctggctctcatac 305 |||||||||||||||||||| Sbjct: 27487 cagctctctggctctcatac 27506
>gb|U10134.1|ASU10134 Anopheles sundaicus NADH dehydrogenase subunit 4 (ND4) and subunit 5 (ND5) genes, mitochondrial genes encoding mitochondrial proteins, partial cds Length = 1445 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tagctaataataaagcaaca 73 |||||||||||||||||||| Sbjct: 1124 tagctaataataaagcaaca 1105
>gb|DQ103125.1| Anopheles funestus NI25 from Nigeria NADH dehydrogenase subunit 5 (ND5) gene, partial cds; mitochondrial Length = 834 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tagctaataataaagcaaca 73 |||||||||||||||||||| Sbjct: 283 tagctaataataaagcaaca 264
>emb|AL583887.9| Mouse DNA sequence from clone RP23-121M7 on chromosome 15, complete sequence Length = 220050 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ttcatttggaggcacagtgg 358 |||||||||||||||||||| Sbjct: 189760 ttcatttggaggcacagtgg 189779 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,102,915 Number of Sequences: 3902068 Number of extensions: 6102915 Number of successful extensions: 120918 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120554 Number of HSP's gapped (non-prelim): 362 length of query: 653 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 630 effective length of database: 17,143,297,704 effective search space: 10800277553520 effective search space used: 10800277553520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
