>VPS16_MOUSE (Q920Q4) Vacuolar protein sorting 16 (mVPS16)|
          Length = 839

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 53/142 (37%), Positives = 83/142 (58%)
 Frame = -1

Query: 678  EEHGKLLRVQHQLEVSTKQAIFVGSSVSDTIKTCIVMGNERAAVKVKSEFKVPDKRWYWL 499
            E+  +LLR+Q +LE       F+  S+ DT+ T I+ G+ + A ++  +F++PDKR +WL
Sbjct: 671  EDQMRLLRIQRRLE-DELGGRFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWL 729

Query: 498  KSCALATVGNWDALETFSREKRPPGGYKPFVEACIDAGQKMEAIKYIPKLTDPGERSEAY 319
            K  ALA + +W+ LE FS+ K+ P GY PFVE C+    K EA KY  ++  P ++ +A 
Sbjct: 730  KLAALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKHEAKKYASRV-GPEQKVKAL 788

Query: 318  ARLNMTDEAEKAASEANNGDEL 253
              +    +A + A E  N  EL
Sbjct: 789  LLVGDVAQAAEVAIEHRNETEL 810

>VPS16_HUMAN (Q9H269) Vacuolar protein sorting 16 (hVPS16)|
          Length = 839

 Score = 92.8 bits (229), Expect = 8e-19
 Identities = 53/142 (37%), Positives = 82/142 (57%)
 Frame = -1

Query: 678  EEHGKLLRVQHQLEVSTKQAIFVGSSVSDTIKTCIVMGNERAAVKVKSEFKVPDKRWYWL 499
            E+  +LLR+Q +LE       F+  S+ DT+ T I+ G+ + A ++  +F++PDKR +WL
Sbjct: 671  EDQMRLLRLQRRLE-DELGGQFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWL 729

Query: 498  KSCALATVGNWDALETFSREKRPPGGYKPFVEACIDAGQKMEAIKYIPKLTDPGERSEAY 319
            K  ALA + +W+ LE FS+ K+ P GY PFVE C+    K EA KY  ++  P ++ +A 
Sbjct: 730  KLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRV-GPEQKVKAL 788

Query: 318  ARLNMTDEAEKAASEANNGDEL 253
              +    +A   A E  N  EL
Sbjct: 789  LLVGDVAQAADVAIEHRNEAEL 810

>VPS16_SCHPO (Q9UT38) Probable vacuolar protein sorting 16|
          Length = 835

 Score = 80.1 bits (196), Expect = 6e-15
 Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 5/164 (3%)
 Frame = -1

Query: 666  KLLRVQHQLEVSTKQAIFVGSSVSDTIKTCIVMGNERAAVKVKSEFKVPDKRWYWLKSCA 487
            KLL++Q   E       FVG +V++ +   I +   + A K++S+F++P+KR+ WLK  A
Sbjct: 671  KLLQLQQTYE-DQFTGNFVGLTVNEVVVKLIQINQTQRANKLRSDFQIPEKRFAWLKLRA 729

Query: 486  LATVGNWDALETFSRE-KRPPGGYKPFVEACIDAGQKMEAIKYIPKLTD--PGERSEAYA 316
            L  + +W  +E ++   +R P G++PFV   + AG K EA KYIP+ T     E+ + + 
Sbjct: 730  LVAIRDWVQIEQWAGSMRRSPIGFEPFVTEILSAGNKKEAAKYIPRCTQLTTQEKVDMWV 789

Query: 315  RLNMTDEAEKAASEANNGDELFGRLK--STLAQNTLIDTLRDRL 190
            ++     A + A+++ +G  L   L+   T+ ++  +    D+L
Sbjct: 790  QVGDVKSASEEAAKSKSGSVLGDLLERVQTMPESRFVQNALDQL 833

>VPS16_YEAST (Q03308) Vacuolar protein sorting-associated protein VPS16|
          Length = 798

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 22/86 (25%), Positives = 40/86 (46%)
 Frame = -1

Query: 615 FVGSSVSDTIKTCIVMGNERAAVKVKSEFKVPDKRWYWLKSCALATVGNWDALETFSREK 436
           F   ++  T+   I  G ++   ++  +FK+ +K+ Y LK   L     +D L  F++ +
Sbjct: 651 FTNMTLDQTLSKLIETGQDKQVKEIVKKFKISEKKLYHLKCKTLVEAKKFDELLQFAQSR 710

Query: 435 RPPGGYKPFVEACIDAGQKMEAIKYI 358
           + P GY PF       G   +A  Y+
Sbjct: 711 KSPIGYMPFYTYLKSRGHMDKASPYV 736

>YPD2_CAEEL (Q11182) Hypothetical protein C05D11.2|
          Length = 852

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
 Frame = -1

Query: 603  SVSDTIKTCIVMGNERAAV-KVKSEFKVPDKRWYWLKSCALATVGNWDALETFSREKRPP 427
            SV DT+   I M ++ A V ++K + ++ DK+        LA  G  + L   + +KR P
Sbjct: 712  SVRDTV---IEMAHDTAKVAQLKQQARLTDKQVLLWTIEGLAKKGKMEQLFDLA-QKRSP 767

Query: 426  GGYKPFVEACIDAGQKMEAIKYIPKLTDPGERSEAYARLNMTDEAEKAASEANNGDEL 253
             GY PFV+AC+   +  E  KY  K+    +   A+  +    EA K A +  + D L
Sbjct: 768  IGYAPFVKACVRYKRLDEIKKYFAKVNGYPDLVAAHLAMKNYVEAAKLAYDRRDRDVL 825

>TXD11_HUMAN (Q6PKC3) Thioredoxin domain-containing protein 11 (EF-hand-binding|
           protein 1)
          Length = 985

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 235 YSGAEYSYRHATGSTIFPRNVLRY 164
           +SG+ Y +RH   S +FPR VL Y
Sbjct: 315 HSGSVYLHRHFNTSLVFPREVLNY 338

>TRME_BUCMP (O51830) Probable tRNA modification GTPase trmE|
          Length = 453

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 440 RRDHQEAINLSWKHALMPVKKWKLSNISQN*QILVKDLR 324
           RR H   INL++   LM  KKW    IS+N ++L + LR
Sbjct: 388 RRRHINQINLAYNEFLMAKKKW---IISKNIELLAESLR 423

>LONH_PYRAB (Q9UYC6) Putative protease La homolog (EC 3.4.21.-) [Contains: Pab|
            lon intein]
          Length = 998

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = -1

Query: 441  EKRPPGGYKPFVEACIDAGQKMEAI-----KYIPKLTDPGERSEAYARLNMTDEAEKAAS 277
            E  P GG  P +EA I+AG K   I     K +    D  E+ E      + +  E A  
Sbjct: 892  EVLPVGGVTPKIEAAIEAGIKKVIIPKANEKDVFLSPDKREKIEIIPVERIDEVLEVALV 951

Query: 276  EANNGDELFGRLKSTL 229
            E+    EL  R++ TL
Sbjct: 952  ESEKKKELIKRIRETL 967


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,384,749
Number of Sequences: 219361
Number of extensions: 2038548
Number of successful extensions: 5270
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5268
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)