ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18g10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191920.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2679 Score = 343 bits (173), Expect = 5e-91 Identities = 317/365 (86%) Strand = Plus / Minus Query: 314 cgtgcgtatgcctcagatctttcaccaggatctgttaattttgggatatatttgatagct 373 ||||| ||||||||||||| ||||| ||||||||| || ||||| || || || | |||| Sbjct: 2522 cgtgcatatgcctcagatcgttcacgaggatctgtcaactttggaatgtacttaagagct 2463 Query: 374 tccattttttgaccggcatcaatgcatgcttccacgaaaggtttatagcctcctggtggt 433 || |||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 2462 tcagttttttgaccagcatcaatacatgcttccacaaaaggtttatagcctcctggtggc 2403 Query: 434 ctcttctctctcgagaatgtttccaaagcatcccaattaccaactgtcgctaaagcacat 493 ||| ||||| |||| || ||||||| |||||||| || |||||||| |||||||||||| Sbjct: 2402 ctcctctctttcgaaaacttttccaacgcatcccagttcccaactgtagctaaagcacat 2343 Query: 494 gacttcaaccagtaccaccttttatcaggaaccttgaattctgatttcactttgactgca 553 || || | |||||||||||| ||||||||||||||||| ||||| |||||||||| |||| Sbjct: 2342 gatttgagccagtaccacctcttatcaggaaccttgaactctgacttcactttgagtgca 2283 Query: 554 gctcgctcatttcccattacaatacaagtttttattgtatcactgacactagaaccaaca 613 ||||| ||||||||||| ||||||| ||||| || ||||| |||||||||||||| ||| Sbjct: 2282 gctcgttcatttcccatggcaatacatgttttgatagtatcgctgacactagaacccaca 2223 Query: 614 aatattgcttgctttgtggaaacttctagttgatgctgcactcttagcaatttcccatgc 673 ||||||||||| ||||||||||||||||||| ||| || |||||||||||| ||||| Sbjct: 2222 aatattgcttgttttgtggaaacttctagttcatgttgtgatcttagcaattttgcatgc 2163 Query: 674 tcttc 678 ||||| Sbjct: 2162 tcttc 2158 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 169 tcagtacgttccttggaaagatagtcgatcccg 201 |||||| || |||||||| |||||||||||||| Sbjct: 2679 tcagtatgtcccttggaaggatagtcgatcccg 2647
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 145 bits (73), Expect = 2e-31 Identities = 109/121 (90%) Strand = Plus / Minus Query: 524 accttgaattctgatttcactttgactgcagctcgctcatttcccattacaatacaagtt 583 |||||||| ||||| |||||||||| ||||||||| ||||||||||| ||||||| ||| Sbjct: 27258090 accttgaactctgacttcactttgagtgcagctcgttcatttcccatggcaatacatgtt 27258031 Query: 584 tttattgtatcactgacactagaaccaacaaatattgcttgctttgtggaaacttctagt 643 || || ||||| |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 27258030 ttgatagtatcgctgacactagaacccacaaatattgcttgttttgtggaaacttctagt 27257971 Query: 644 t 644 | Sbjct: 27257970 t 27257970 Score = 99.6 bits (50), Expect = 1e-17 Identities = 92/106 (86%) Strand = Plus / Minus Query: 422 cctcctggtggtctcttctctctcgagaatgtttccaaagcatcccaattaccaactgtc 481 ||||||||||| ||| ||||| |||| || ||||||| |||||||| || |||||||| Sbjct: 27258273 cctcctggtggcctcctctctttcgaaaacttttccaacgcatcccagttcccaactgta 27258214 Query: 482 gctaaagcacatgacttcaaccagtaccaccttttatcaggaacct 527 |||||||||||||| || | |||||||||||| ||||||||||||| Sbjct: 27258213 gctaaagcacatgatttgagccagtaccacctcttatcaggaacct 27258168 Score = 89.7 bits (45), Expect = 1e-14 Identities = 87/101 (86%) Strand = Plus / Minus Query: 324 cctcagatctttcaccaggatctgttaattttgggatatatttgatagcttccatttttt 383 ||||||||| ||||| ||||||||| || ||||| || || || | |||||| |||||| Sbjct: 27258526 cctcagatcgttcacgaggatctgtcaactttggaatgtacttaagagcttcagtttttt 27258467 Query: 384 gaccggcatcaatgcatgcttccacgaaaggtttatagcct 424 |||| |||||||| ||||||||||| ||||||||||||||| Sbjct: 27258466 gaccagcatcaatacatgcttccacaaaaggtttatagcct 27258426 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 169 tcagtacgttccttggaaagatagtcgatcccg 201 |||||| || |||||||| |||||||||||||| Sbjct: 27259419 tcagtatgtcccttggaaggatagtcgatcccg 27259387
>dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05 Length = 182681 Score = 145 bits (73), Expect = 2e-31 Identities = 109/121 (90%) Strand = Plus / Minus Query: 524 accttgaattctgatttcactttgactgcagctcgctcatttcccattacaatacaagtt 583 |||||||| ||||| |||||||||| ||||||||| ||||||||||| ||||||| ||| Sbjct: 38607 accttgaactctgacttcactttgagtgcagctcgttcatttcccatggcaatacatgtt 38548 Query: 584 tttattgtatcactgacactagaaccaacaaatattgcttgctttgtggaaacttctagt 643 || || ||||| |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 38547 ttgatagtatcgctgacactagaacccacaaatattgcttgttttgtggaaacttctagt 38488 Query: 644 t 644 | Sbjct: 38487 t 38487 Score = 99.6 bits (50), Expect = 1e-17 Identities = 92/106 (86%) Strand = Plus / Minus Query: 422 cctcctggtggtctcttctctctcgagaatgtttccaaagcatcccaattaccaactgtc 481 ||||||||||| ||| ||||| |||| || ||||||| |||||||| || |||||||| Sbjct: 38790 cctcctggtggcctcctctctttcgaaaacttttccaacgcatcccagttcccaactgta 38731 Query: 482 gctaaagcacatgacttcaaccagtaccaccttttatcaggaacct 527 |||||||||||||| || | |||||||||||| ||||||||||||| Sbjct: 38730 gctaaagcacatgatttgagccagtaccacctcttatcaggaacct 38685 Score = 89.7 bits (45), Expect = 1e-14 Identities = 87/101 (86%) Strand = Plus / Minus Query: 324 cctcagatctttcaccaggatctgttaattttgggatatatttgatagcttccatttttt 383 ||||||||| ||||| ||||||||| || ||||| || || || | |||||| |||||| Sbjct: 39043 cctcagatcgttcacgaggatctgtcaactttggaatgtacttaagagcttcagtttttt 38984 Query: 384 gaccggcatcaatgcatgcttccacgaaaggtttatagcct 424 |||| |||||||| ||||||||||| ||||||||||||||| Sbjct: 38983 gaccagcatcaatacatgcttccacaaaaggtttatagcct 38943 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 169 tcagtacgttccttggaaagatagtcgatcccg 201 |||||| || |||||||| |||||||||||||| Sbjct: 39936 tcagtatgtcccttggaaggatagtcgatcccg 39904
>dbj|AP006651.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT30M07, TM0331b, complete sequence Length = 18227 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 523 aaccttgaattctgatttcactttgactgcagctcgctcatttcccattacaatacaagt 582 |||||| ||||||| ||||||||| ||||||||| | |||||||| ||||||||||| Sbjct: 3444 aaccttaaattctgttttcacttttgttgcagctcgatgatttcccaagacaatacaagt 3385 Query: 583 ttttattgtatcactgacactagaaccaacaaatattgcttgctttgtgg 632 ||||||||||| | ||| ||| | ||||| || || |||||||||| Sbjct: 3384 acggattgtatcacttatacttgaatccacaaaaatggcctgctttgtgg 3335 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 ttttgggatatatttgatagcttc 375 ||||||||||||||| |||||||| Sbjct: 5064 ttttgggatatatttaatagcttc 5041
>emb|AL158151.16| Human DNA sequence from clone RP11-247A12 on chromosome 9 Contains the CRAT gene for carnitine acetyltransferase (CAT1), the PPP2R4 gene for protein phosphatase 2A, regulatory subunit B' (PR 53) (PTPA), the IER5L gene for immediate early response 5-like, a novel gene and three CpG islands, complete sequence Length = 162445 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 281 gctgccttttcagcttcatcag 302 |||||||||||||||||||||| Sbjct: 97395 gctgccttttcagcttcatcag 97374
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 657 ttagcaatttcccatgctctt 677 ||||||||||||||||||||| Sbjct: 1549865 ttagcaatttcccatgctctt 1549885
>ref|NM_177798.3| Mus musculus fibroblast growth factor receptor substrate 2 (Frs2), mRNA Length = 5701 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 attgttagcctctgatgctgc 285 ||||||||||||||||||||| Sbjct: 311 attgttagcctctgatgctgc 291
>gb|AC144517.7| Medicago truncatula clone mth2-13k17, complete sequence Length = 107710 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 102 ggagattcatacacaatgaaaaagt 126 ||||||||||||| ||||||||||| Sbjct: 25189 ggagattcatacaaaatgaaaaagt 25213
>gb|DQ366745.1| Uncultured Prochlorococcus marinus clone HOT0M-9F4 genomic sequence Length = 43714 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 657 ttagcaatttcccatgctctt 677 ||||||||||||||||||||| Sbjct: 30367 ttagcaatttcccatgctctt 30387
>gb|DQ366723.1| Uncultured Prochlorococcus marinus clone HF10-11H11 genomic sequence Length = 37311 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 657 ttagcaatttcccatgctctt 677 ||||||||||||||||||||| Sbjct: 27456 ttagcaatttcccatgctctt 27436
>emb|AL390240.18| Human DNA sequence from clone RP11-428F18 on chromosome 9 Contains the TNFSF15 gene for tumor necrosis factor (ligand) superfamily, member 15 (TL1, VEG1), complete sequence Length = 93876 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 ctctgatgctgccttttcagc 294 ||||||||||||||||||||| Sbjct: 60582 ctctgatgctgccttttcagc 60562
>gb|AC174344.9| Medicago truncatula clone mth2-167b8, complete sequence Length = 141135 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 102 ggagattcatacacaatgaaaaagt 126 ||||||||||||| ||||||||||| Sbjct: 137572 ggagattcatacaaaatgaaaaagt 137596
>gb|AC090071.3| Homo sapiens chromosome 5 clone CTD-2538A21, complete sequence Length = 197810 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 gattcatacacaatgaaaaag 125 ||||||||||||||||||||| Sbjct: 41924 gattcatacacaatgaaaaag 41904
>gb|AC004673.1| Homo sapiens X BAC GSHB-590J15 (Genome Systems Human BAC library) complete sequence Length = 236281 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 ctcctggtggtctcttctctc 443 ||||||||||||||||||||| Sbjct: 190598 ctcctggtggtctcttctctc 190578
>dbj|AK163442.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230035J08 product:fibroblast growth factor receptor substrate 2, full insert sequence Length = 2147 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 attgttagcctctgatgctgc 285 ||||||||||||||||||||| Sbjct: 333 attgttagcctctgatgctgc 313
>gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone mth2-76a9, complete sequence Length = 142579 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 tgctgccttttcagcttcatc 300 ||||||||||||||||||||| Sbjct: 88184 tgctgccttttcagcttcatc 88204
>dbj|AK028813.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732458E18 product:fibroblast growth factor receptor substrate 2, full insert sequence Length = 2918 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 attgttagcctctgatgctgc 285 ||||||||||||||||||||| Sbjct: 327 attgttagcctctgatgctgc 307
>gb|AC157497.3| Pan troglodytes BAC clone CH251-490K17 from chromosome unknown, complete sequence Length = 207664 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 ctgccttttcagcttcatcag 302 ||||||||||||||||||||| Sbjct: 43751 ctgccttttcagcttcatcag 43731
>gb|BC055334.1| Mus musculus fibroblast growth factor receptor substrate 2, mRNA (cDNA clone MGC:64739 IMAGE:6830555), complete cds Length = 5792 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 attgttagcctctgatgctgc 285 ||||||||||||||||||||| Sbjct: 347 attgttagcctctgatgctgc 327
>gb|BC043109.1| Mus musculus fibroblast growth factor receptor substrate 2, mRNA (cDNA clone MGC:58030 IMAGE:6406912), complete cds Length = 5701 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 attgttagcctctgatgctgc 285 ||||||||||||||||||||| Sbjct: 311 attgttagcctctgatgctgc 291
>emb|AL589661.21| Mouse DNA sequence from clone RP23-58B7 on chromosome 15, complete sequence Length = 241432 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 attgttagcctctgatgctgc 285 ||||||||||||||||||||| Sbjct: 88948 attgttagcctctgatgctgc 88928
>ref|XM_513301.1| PREDICTED: Pan troglodytes similar to KIAA1353 protein (LOC456736), mRNA Length = 2601 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 tgatgctgccttttcagctt 296 |||||||||||||||||||| Sbjct: 2475 tgatgctgccttttcagctt 2494
>gb|AC167331.3| Mus musculus chromosome 1, clone RP23-301L19, complete sequence Length = 197718 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 aatacaagtttttattgtat 593 |||||||||||||||||||| Sbjct: 171830 aatacaagtttttattgtat 171811
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 ttgatgctgcactcttagca 662 |||||||||||||||||||| Sbjct: 1266542 ttgatgctgcactcttagca 1266561
>ref|XM_659053.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6541.2), mRNA Length = 2253 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tggtggtctcttctctctcg 446 |||||||||||||||||||| Sbjct: 1251 tggtggtctcttctctctcg 1270
>gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosome 15, complete sequence Length = 165103 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 atattgcttgctttgtggaa 634 |||||||||||||||||||| Sbjct: 59868 atattgcttgctttgtggaa 59849
>gb|AC097635.4| Homo sapiens chromosome 3 clone RP11-263O21, complete sequence Length = 164454 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 531 attctgatttcactttgact 550 |||||||||||||||||||| Sbjct: 90266 attctgatttcactttgact 90247
>emb|AL160165.17| Human DNA sequence from clone RP11-143F18 on chromosome 9 Contains the 5' end of the DDX31 gene for DEAD/H box polypeptide 31, the GTF3C4 gene for general transcription factor IIIC, polypeptide 4, the 3' end of gene FLJ32704, a novel gene and a CpG island, complete sequence Length = 139776 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tgccttttcagcttcatcag 302 |||||||||||||||||||| Sbjct: 116148 tgccttttcagcttcatcag 116129
>gb|AC161234.7| Mus musculus chromosome 1, clone RP24-392G9, complete sequence Length = 141914 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 574 aatacaagtttttattgtat 593 |||||||||||||||||||| Sbjct: 96939 aatacaagtttttattgtat 96958
>emb|AL929352.1|PFA929352 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4 Length = 313050 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 aatgaaaaagtgaacacaaa 135 |||||||||||||||||||| Sbjct: 62606 aatgaaaaagtgaacacaaa 62625
>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 267509 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 tccttggaaagatagtcgat 197 |||||||||||||||||||| Sbjct: 152273 tccttggaaagatagtcgat 152292
>emb|AJ401150.1|STU401150 Solanum tuberosum mRNA for putative peroxidase (prx2 gene) Length = 1337 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 tacaagtttttattgtatca 595 |||||||||||||||||||| Sbjct: 55 tacaagtttttattgtatca 74
>gb|AC068797.29| Homo sapiens 12 BAC RP1-81P11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 136257 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 ttcaccaggatctgttaattttgg 357 |||||||| ||||||||||||||| Sbjct: 128317 ttcaccagcatctgttaattttgg 128340
>emb|BX571953.9| Zebrafish DNA sequence from clone RP71-69B23 in linkage group 13, complete sequence Length = 144282 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 ttgaattctgatttcacttt 546 |||||||||||||||||||| Sbjct: 97185 ttgaattctgatttcacttt 97166
>dbj|AK000927.1| Homo sapiens cDNA FLJ10065 fis, clone HEMBA1001455 Length = 2035 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 tgatgctgccttttcagctt 296 |||||||||||||||||||| Sbjct: 1786 tgatgctgccttttcagctt 1805
>gb|AC114490.2| Homo sapiens chromosome 1 clone RP11-244H3, complete sequence Length = 152428 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 tgatgctgccttttcagctt 296 |||||||||||||||||||| Sbjct: 117021 tgatgctgccttttcagctt 117002
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 ggcgaccaaatagctcgtcgccat 266 |||||||| ||||||||||||||| Sbjct: 140080 ggcgaccacatagctcgtcgccat 140057
>gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4, complete sequence Length = 160858 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 acaatgaaaaagtgaacacaaaca 137 |||||||||||| ||||||||||| Sbjct: 116717 acaatgaaaaagagaacacaaaca 116740
>ref|XM_625126.1| PREDICTED: Apis mellifera similar to CG8184-PB (LOC552751), mRNA Length = 3609 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 ttctgatttcactttgactg 551 |||||||||||||||||||| Sbjct: 2812 ttctgatttcactttgactg 2793
>gb|AC007805.5|AC007805 Drosophila melanogaster, chromosome 3R, region 86F-86F, BAC clone BACR11G22, complete sequence Length = 170324 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cttttcagcttcatcagtca 305 |||||||||||||||||||| Sbjct: 91025 cttttcagcttcatcagtca 91044
>emb|AL929407.16| Mouse DNA sequence from clone RP23-99C16 on chromosome 2, complete sequence Length = 144566 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 agtttttattgtatcactga 599 |||||||||||||||||||| Sbjct: 99624 agtttttattgtatcactga 99643
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 acattttccatcgcgctgga 67 |||||||||||||||||||| Sbjct: 361678 acattttccatcgcgctgga 361697
>gb|AC153868.3| Mus musculus BAC RP23-384D16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 211603 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 atcacgaactgtgcttgcac 163 |||||||||||||||||||| Sbjct: 92227 atcacgaactgtgcttgcac 92246
>gb|AC153578.4| Mus musculus 6 BAC RP23-218P2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228417 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 atcacgaactgtgcttgcac 163 |||||||||||||||||||| Sbjct: 13646 atcacgaactgtgcttgcac 13665
>gb|AE003692.3| Drosophila melanogaster chromosome 3R, section 30 of 118 of the complete sequence Length = 227847 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cttttcagcttcatcagtca 305 |||||||||||||||||||| Sbjct: 194305 cttttcagcttcatcagtca 194324
>gb|AY900230.1| Marmota monax interleukin 15 mRNA, complete cds Length = 1107 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 gacttcaaccagtaccacct 513 |||||||||||||||||||| Sbjct: 125 gacttcaaccagtaccacct 106
>emb|AL670236.9| Mouse DNA sequence from clone RP23-242K15 on chromosome 4, complete sequence Length = 232950 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 ttctgatttcactttgactg 551 |||||||||||||||||||| Sbjct: 145925 ttctgatttcactttgactg 145906
>emb|BX005482.9| Mouse DNA sequence from clone RP23-146O10 on chromosome X, complete sequence Length = 169991 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 atatatttgatagcttccat 378 |||||||||||||||||||| Sbjct: 103879 atatatttgatagcttccat 103860
>emb|AL833263.1|HSM804576 Homo sapiens mRNA; cDNA DKFZp451E2210 (from clone DKFZp451E2210) Length = 6255 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 tgatgctgccttttcagctt 296 |||||||||||||||||||| Sbjct: 5176 tgatgctgccttttcagctt 5195
>dbj|AB037774.1| Homo sapiens mRNA for KIAA1353 protein, partial cds Length = 3877 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 tgatgctgccttttcagctt 296 |||||||||||||||||||| Sbjct: 3629 tgatgctgccttttcagctt 3648
>emb|AL672127.9| Mouse DNA sequence from clone RP23-370O18 on chromosome X, complete sequence Length = 161908 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 tgttaattttgggatatatttgat 369 ||||||||||||||| |||||||| Sbjct: 15109 tgttaattttgggatttatttgat 15086 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,788,682 Number of Sequences: 3902068 Number of extensions: 6788682 Number of successful extensions: 132326 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 132123 Number of HSP's gapped (non-prelim): 202 length of query: 678 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 655 effective length of database: 17,143,297,704 effective search space: 11228859996120 effective search space used: 11228859996120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
