>WDR1_XENLA (Q9W7F2) WD-repeat protein 1 (Actin-interacting protein 1) (XAIP1)|
          Length = 608

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -3

Query: 479 GAIRSIHYTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFGEIA---GISFSPDTE 315
           GA+  + Y+ DG FLA+ +A   + +F V  GY  K    ++G  A    +++SPD E
Sbjct: 490 GAVTDLAYSHDGAFLAVTDANKVVTVFSVADGYSEKN--SYYGHHAKALSVAWSPDNE 545

>WDR1_MOUSE (O88342) WD-repeat protein 1 (Actin-interacting protein 1) (AIP1)|
          Length = 605

 Score = 38.1 bits (87), Expect = 0.027
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -3

Query: 479 GAIRSIHYTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFG---EIAGISFSPDTE 315
           G +  + Y+ DG FLA+ +A+  + +F V  GY       F+G   +I  +++SPD E
Sbjct: 489 GPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNV--FYGHHAKIVCLAWSPDNE 544

>WDR1_HUMAN (O75083) WD-repeat protein 1 (Actin-interacting protein 1) (AIP1)|
           (NORI-1)
          Length = 605

 Score = 38.1 bits (87), Expect = 0.027
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -3

Query: 479 GAIRSIHYTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFG---EIAGISFSPDTE 315
           G +  + Y+ DG FLA+ +A+  + +F V  GY       F+G   +I  +++SPD E
Sbjct: 489 GPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNV--FYGHHAKIVCLAWSPDNE 544

>EMB30_CAEEL (P34441) Abnormal embryogenesis protein 30|
          Length = 1027

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
 Frame = -3

Query: 554 TCWKMVLLTLL--F*ALGSRVLPYIQMGAIRSIHYTSDGKFLAMAEAADFIHIFDVGSGY 381
           T WKM+  T +    A+G+         ++ ++H++ DG+FLA A +   IH+ DV +G 
Sbjct: 49  TSWKMIWKTNINMIQAVGTECK---LDSSVSALHFSPDGRFLAAATSKGIIHLLDVETGK 105

Query: 380 DRKQELDFFGEIAGISFSPDTEALFVS 300
            R        +IA + ++   E  F+S
Sbjct: 106 VRFSVKAASEKIAKLHWNCVREKPFIS 132

>WDR1_CHICK (O93277) WD-repeat protein 1 (Actin-interacting protein 1) (AIP1)|
          Length = 609

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -3

Query: 479 GAIRSIHYTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFG---EIAGISFSPDTE 315
           G +  + Y+ DG FLA+ +A   + +F V  GY   +   F+G   ++  I++SPD E
Sbjct: 492 GPVTDLAYSHDGAFLAVCDANKVVTVFSVPDGY--VEHNVFYGHHAKVVCIAWSPDNE 547

>Y2484_DEIRA (Q9RRK5) Hypothetical WD-repeat protein DR2484|
          Length = 267

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -3

Query: 482 MGAIRSIHYTSDGKFLA-MAEAADFIHIFDVGSGYDRKQELDFFGEIAGISFSPDTEALF 306
           + A+ +  ++ DG++L  +A+ + ++ ++D   G   K  L  +  I G  F+PD+E L 
Sbjct: 52  LNAVTASKFSPDGRWLLNIADGSGYVQLWDTAKGERVKTFLSVYFRIFGADFTPDSERLL 111

Query: 305 V 303
           +
Sbjct: 112 L 112

>WDR20_MOUSE (Q9D5R2) WD-repeat protein 20|
          Length = 567

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -3

Query: 479 GAIRSIHYTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFGEIAGISFSPDTEALFVS 300
           GA+    ++ DGKFLA      F+ +F+  S         +FG +  + +SPD + +   
Sbjct: 219 GALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTG 278

Query: 299 VHD 291
             D
Sbjct: 279 GED 281

>WDR20_HUMAN (Q8TBZ3) WD-repeat protein 20 (DMR protein)|
          Length = 569

 Score = 33.5 bits (75), Expect = 0.65
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -3

Query: 479 GAIRSIHYTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFGEIAGISFSPDTEALFVS 300
           GA+    ++ DGKFLA      F+ +F+  S         +FG +  + +SPD + +   
Sbjct: 221 GALNEFAFSPDGKFLACVSQDGFLRVFNFDSVELHGTMKSYFGGLLCVCWSPDGKYIVTG 280

Query: 299 VHD 291
             D
Sbjct: 281 GED 283

>TAF5_SCHPO (O13282) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 72 kDa subunit)
           (TAFII-72)
          Length = 643

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -3

Query: 473 IRSIHYTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFGEIAGISFSPDTEAL 309
           + ++    DG  +A A++   IH++D+G+G   K      G I  +SFS ++  L
Sbjct: 508 VTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSRESTVL 562

>Y2800_ANASP (Q8YTC2) Hypothetical WD-repeat protein alr2800|
          Length = 1258

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -3

Query: 479  GAIRSIHYTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFGEIAGISFSPDTEALFVS 300
            G +RS+ +++DG+ LA       I I++  +G   K  +     +  I++SPD++ L   
Sbjct: 811  GWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSG 870

Query: 299  VHDR 288
              DR
Sbjct: 871  SGDR 874

>Y2124_ANASP (Q8YV57) Hypothetical WD-repeat protein all2124|
          Length = 1683

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = -3

Query: 473  IRSIHYTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFGEIAGISFSPDTEALFVSVH 294
            +  ++++ DGK LA A   + + +++V  G  +K       E+  +SFSPD + +  +  
Sbjct: 1449 VNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSPDGKIIASASA 1508

Query: 293  DR 288
            D+
Sbjct: 1509 DK 1510

>TAF5L_MOUSE (Q91WQ5) TAF5-like RNA polymerase II p300/CBP-associated|
           factor-associated factor 65 kDa subunit 5L
           (PCAF-associated factor 65 beta) (PAF65-beta)
          Length = 589

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = -3

Query: 479 GAIRSIHYTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFGEIAGISFSPDT 318
           G + S+ ++ +GK+LA A     + ++D+ SG   K+       I  ++FSPD+
Sbjct: 469 GPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDS 522

>TAF5L_HUMAN (O75529) TAF5-like RNA polymerase II p300/CBP-associated|
           factor-associated factor 65 kDa subunit 5L
           (PCAF-associated factor 65 beta) (PAF65-beta)
          Length = 589

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = -3

Query: 479 GAIRSIHYTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFGEIAGISFSPDT 318
           G + S+ ++ +GK+LA A     + ++D+ SG   K+       I  ++FSPD+
Sbjct: 469 GPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDS 522

>TIPD_DICDI (O15736) Protein tipD|
          Length = 612

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -3

Query: 458 YTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFGEIAGISFSPDTEALFVSVHD---R 288
           + S G  LA       + ++DV SG  +   L     I  +SFSP+ E++  + +D   R
Sbjct: 332 FNSIGNLLATGGGDKCVKVWDVISGQQKSTLLGASQSIVSVSFSPNDESILGTSNDNSAR 391

Query: 287 NYSSLLQYSRRRFYGYL 237
            +++ L  SR    G++
Sbjct: 392 LWNTELGRSRHTLTGHI 408

>Y1725_DEIRA (O83030) Hypothetical WD-repeat protein DR1725 (Orf509d)|
          Length = 263

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -3

Query: 482 MGAIRSIHYTSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFGEIAGISFSPDTEALFV 303
           + A+ +  ++ DG++L       ++ ++DV  G   K  L  F  +    F+PD+  L +
Sbjct: 52  LSAVTASKFSPDGRWLVNLTDQGYVQLWDVHKGERVKTFLAPFARVLNADFTPDSTRLLL 111

Query: 302 SV-HDRNYSSLLQYSRRRFY 246
           +   D   ++  Q +R  F+
Sbjct: 112 NFWGDSTPTNFWQGTRSSFW 131

>SWD2_SCHPO (O60137) Set1 complex component swd2 (Set1C component swd2)|
           (COMPASS component swd2) (Complex proteins associated
           with set1 protein swd2)
          Length = 357

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
 Frame = -3

Query: 473 IRSIHYTSDGKFLAMAEAADFIHIFDVGSGYD---------RKQELDFFGEIAGISFSPD 321
           I ++ +++DGK+L +    DF ++ D  SG +          K +       A    SPD
Sbjct: 204 IANVEFSTDGKYLLLTTGNDFHYVIDAYSGSELLRVPSKVSTKTQDGNLTYYASACMSPD 263

Query: 320 TEALFVSVHDRNYSSLLQ 267
           ++ LF S +D  +  + Q
Sbjct: 264 SKFLFTS-YDNEHLCMYQ 280

>U3IP2_MOUSE (Q91WM3) U3 small nucleolar RNA-interacting protein 2 (U3 small|
           nucleolar ribonucleoproptein-associated 55-kDa protein)
           (U3 snoRNP-associated 55-kDa protein) (U3-55K)
          Length = 475

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -3

Query: 455 TSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFGEIAGISFSPDTEALFVSVHDRN 285
           +SDGK+LA  + +  I I++  S             ++G++F   T  L+ + HDR+
Sbjct: 208 SSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRKGTHQLYSTSHDRS 264

>U2AFM_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa|
           subunit related-protein 2 (U2(RNU2) small nuclear RNA
           auxillary factor 1-like 2)
          Length = 462

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 571 DLQAVQRV--GRWYCLLCSFRRLVAEFCPIFRWE 476
           D QA   V  GRWY    + R+L  EFCP+ RW+
Sbjct: 283 DCQAAFSVFNGRWY----AGRQLQCEFCPVTRWK 312

>MCL1_SCHPO (Q9C107) Minichromosome loss protein 1|
          Length = 815

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 509 GSRVLP-YIQMGAIRSIHYTSDGKFLAMAEAADFIHIFDVGS 387
           G+R++P Y     +  + YT DGKFL    +   I  F VGS
Sbjct: 3   GNRLVPRYAHTDGLTRLAYTRDGKFLLTVGSNQVIRKFQVGS 44

>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III|
          Length = 902

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 24/93 (25%), Positives = 43/93 (46%)
 Frame = -3

Query: 572 RSASSATCWKMVLLTLLF*ALGSRVLPYIQMGAIRSIHYTSDGKFLAMAEAADFIHIFDV 393
           ++ SSA  W     TL     G  VLP     ++RS+  +  G F  +  +   + ++++
Sbjct: 419 KNDSSARTWNWKSKTL-----GQHVLPTSDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNM 473

Query: 392 GSGYDRKQELDFFGEIAGISFSPDTEALFVSVH 294
            SG  RK     FG+ + +S  P T  +  +V+
Sbjct: 474 QSGIKRKS----FGQ-SSLSGKPVTAVMLDNVN 501

>U3IP2_HUMAN (O43818) U3 small nucleolar RNA-interacting protein 2 (U3 small|
           nucleolar ribonucleoproptein-associated 55-kDa protein)
           (U3 snoRNP-associated 55-kDa protein) (U3-55K)
          Length = 475

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -3

Query: 455 TSDGKFLAMAEAADFIHIFDVGSGYDRKQELDFFGEIAGISFSPDTEALFVSVHDRN 285
           +SDGK+LA  + +  I I++  S             ++G++F   T  L+ + HDR+
Sbjct: 208 SSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRS 264

>U2AFL_HUMAN (Q15695) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa|
           subunit-related protein 1 (U2(RNU2) small nuclear RNA
           auxillary factor 1-like 1)
          Length = 479

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 547 GRWYCLLCSFRRLVAEFCPIFRWE 476
           GRWY    + R+L  EFCP+ RW+
Sbjct: 294 GRWY----AGRQLQCEFCPVTRWK 313

>U2AFL_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa|
           subunit-related protein 1 (U2(RNU2) small nuclear RNA
           auxillary factor 1-like 1) (SP2)
          Length = 428

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 547 GRWYCLLCSFRRLVAEFCPIFRWE 476
           GRWY    + R+L  EFCP+ RW+
Sbjct: 280 GRWY----AGRQLQCEFCPVTRWK 299

>WDR1_DROME (Q9VU68) Putative actin-interacting protein 1 (AIP1)|
          Length = 608

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 467 SIHYTSDGKFLAMAEAADFIHIFDVGSGY-DRKQELDFFGEIAGISFSPDTEAL 309
           SI   +D   +A+      +HI+ +  G  + K ELD  G +  +S+SPD + L
Sbjct: 451 SIAVNADTSDVAVGGDDQKLHIYTLKGGVLEPKVELDHLGAVTDVSYSPDLKYL 504

>U2AFM_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa|
           subunit related-protein 2 (U2(RNU2) small nuclear RNA
           auxillary factor 1-like 2) (NY-REN-20 antigen)
          Length = 482

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 547 GRWYCLLCSFRRLVAEFCPIFRWE 476
           GRWY    + R+L  EFCP+ RW+
Sbjct: 289 GRWY----AGRQLQCEFCPVTRWK 308

>PON1_HUMAN (P27169) Serum paraoxonase/arylesterase 1 (EC 3.1.1.2) (EC 3.1.8.1)|
           (PON 1) (Serum aryldialkylphosphatase 1) (A-esterase 1)
           (Aromatic esterase 1) (K-45)
          Length = 354

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = -3

Query: 464 IHYTSDGKFLAMAEA-ADFIHIFDVGSGYDRK--QELDFFGEIAGISFSPDTEALFVSVH 294
           I+ + DGK++ +AE  A  IH+++  + +     + LDF   +  IS  P+T  L+V  H
Sbjct: 225 INISPDGKYVYIAELLAHKIHVYEKHANWTLTPLKSLDFNTLVDNISVDPETGDLWVGCH 284

>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein|
           5.4) (Ultrahigh sulfur keratin-associated protein 5.4)
          Length = 288

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -1

Query: 193 KIACCRKDVHISWCGCALTKPKQSYKGVVALNKLTACCYK*CHHPYISQNSC 38
           K  CC      S C  +  KP  S  G  +     +CC   C  PY  Q+SC
Sbjct: 203 KPCCCSSGCGSSCCQSSCCKPCCSSSGCGS-----SCCQSSCCKPYCCQSSC 249


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,809,238
Number of Sequences: 219361
Number of extensions: 1731958
Number of successful extensions: 5054
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5052
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)