ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110591.1| Zea mays CL28492_1 mRNA sequence 182 1e-42
2ref|XM_483165.1| Oryza sativa (japonica cultivar-group), mRNA 133 9e-28
3ref|XM_507280.1| PREDICTED Oryza sativa (japonica cultivar-group... 133 9e-28
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 133 9e-28
5dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic D... 133 9e-28
6dbj|AK121435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 9e-28
7dbj|AK112033.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 9e-28
8ref|XM_474099.1| Oryza sativa (japonica cultivar-group), predic... 125 2e-25
9emb|AL606445.2|OSJN00018 Oryza sativa genomic DNA, chromosome 4,... 125 2e-25
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
11dbj|AK100454.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
12emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 125 2e-25
13gb|BT016291.1| Zea mays clone Contig124 mRNA sequence 60 1e-05
14gb|BT023993.1| Zea mays clone EL01N0409G03 mRNA sequence 60 1e-05
15gb|AY106954.1| Zea mays PCO143990 mRNA sequence 60 1e-05
16gb|BT018990.1| Zea mays clone Contig475.F mRNA sequence 58 4e-05
17gb|BT024112.1| Zea mays clone EL01N0513F07 mRNA sequence 58 4e-05
18gb|AY108125.1| Zea mays PCO127778 mRNA sequence 58 4e-05
19ref|XM_467523.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.003
20ref|XM_506946.1| PREDICTED Oryza sativa (japonica cultivar-group... 52 0.003
21ref|XM_467524.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.003
22gb|AY596536.1| Saccharum officinarum clone SCJFRZ2007F05, comple... 52 0.003
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
24dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
25dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
26dbj|AK112042.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
27dbj|AK111973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
28dbj|AK111669.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
29dbj|AK111506.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
30dbj|AK098883.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
31ref|XM_686796.1| PREDICTED: Danio rerio similar to CG2488-PB, is... 44 0.62
32gb|BT017359.1| Zea mays clone EL01N0324C06.c mRNA sequence 42 2.5
33gb|AC150664.2| Bos taurus BAC CH240-244O10 (Children's Hospital... 42 2.5
34gb|AY107172.1| Zea mays PCO127780 mRNA sequence 42 2.5
35gb|AC115690.13| Mus musculus chromosome 12, clone RP24-537M9, co... 40 9.7
36gb|AC166654.1| Mus musculus BAC clone RP23-426B21 from chromosom... 40 9.7
37emb|CR382378.12| Zebrafish DNA sequence from clone DKEYP-40G12 i... 40 9.7
38emb|BX323855.5| Zebrafish DNA sequence from clone CH211-134O20 i... 40 9.7
39gb|AC098655.2| Homo sapiens chromosome 1 clone RP11-293P10, comp... 40 9.7
40gb|AC104320.2| Homo sapiens chromosome 8 clone CTD-2204N4 map 8p... 40 9.7
41gb|AC099672.2| Homo sapiens chromosome 1 clone RP11-286H10, comp... 40 9.7
42gb|AC090740.5| Homo sapiens chromosome 8, clone RP11-595O22, com... 40 9.7
43gb|AC159204.2| Mus musculus BAC clone RP23-229H13 from chromosom... 40 9.7
44gb|AC159198.2| Mus musculus BAC clone RP23-388C15 from chromosom... 40 9.7
45gb|AC154485.2| Mus musculus BAC clone RP24-117M9 from chromosome... 40 9.7
46gb|AC105279.3| Homo sapiens chromosome 1 clone RP5-1153M13, comp... 40 9.7
47gb|AC154310.2| Mus musculus BAC clone RP23-358E14 from chromosom... 40 9.7
48emb|AL954135.7| Mouse DNA sequence from clone RP23-231H10 on chr... 40 9.7
49emb|CT009728.8| Mouse DNA sequence from clone RP23-57I20 on chro... 40 9.7 
>gb|AY110591.1| Zea mays CL28492_1 mRNA sequence
          Length = 796

 Score =  182 bits (92), Expect = 1e-42
 Identities = 172/198 (86%), Gaps = 3/198 (1%)
 Strand = Plus / Plus

                                                                       
Query: 222 tcacagagctgaatcaaggtacccgtagaaccgtcgacgactgtactggaggaggctgct 281
           |||||| | |||||||||||||  |||||||||||| |||||| |||||||||||| || 
Sbjct: 330 tcacagtgttgaatcaaggtacgagtagaaccgtcgccgactgaactggaggaggcagca 389

                                                                       
Query: 282 at---agttgcgatcatgcacgctgacaaagagagcctcggtgtcaggactgaacgatat 338
            |   ||  |||||||||||| | |||||||||||| || ||||||||||||||||||||
Sbjct: 390 gttgaagaagcgatcatgcacaccgacaaagagagcttcagtgtcaggactgaacgatat 449

                                                                       
Query: 339 gccggcaatctcaccaaagaagtccagctcctgcttcctgtcgtacccgctcccgacgtc 398
           ||| || |||||||||||||||||||||||||||||||||  |||||| ||| | || ||
Sbjct: 450 gcctgcgatctcaccaaagaagtccagctcctgcttcctgctgtacccactctcaacatc 509

                             
Query: 399 gaagatgtggatgaagtc 416
           ||||||||||||||||||
Sbjct: 510 gaagatgtggatgaagtc 527
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>ref|XM_483165.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1716

 Score =  133 bits (67), Expect = 9e-28
 Identities = 169/203 (83%)
 Strand = Plus / Minus

                                                                        
Query: 232  gaatcaaggtacccgtagaaccgtcgacgactgtactggaggaggctgctatagttgcga 291
            |||||||||||   |||||||||| | ||  ||||||||||||||||||||||| | |||
Sbjct: 1478 gaatcaaggtatgagtagaaccgtagccggttgtactggaggaggctgctataggtccga 1419

                                                                        
Query: 292  tcatgcacgctgacaaagagagcctcggtgtcaggactgaacgatatgccggcaatctca 351
            ||||| || | ||  || |||||||||||||| ||||||||||| ||||| | |||||||
Sbjct: 1418 tcatgaacaccgatgaacagagcctcggtgtcgggactgaacgaaatgccagaaatctca 1359

                                                                        
Query: 352  ccaaagaagtccagctcctgcttcctgtcgtacccgctcccgacgtcgaagatgtggatg 411
            |||||||| |||| | ||||||||||   ||||||||| ||||||||||| || || | |
Sbjct: 1358 ccaaagaaatccaccacctgcttccttcggtacccgcttccgacgtcgaatatatgaacg 1299

                                   
Query: 412  aagtctgcagcttcggccattgc 434
            || ||||| | ||| ||||||||
Sbjct: 1298 aaatctgctggttccgccattgc 1276
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>ref|XM_507280.1| PREDICTED Oryza sativa (japonica cultivar-group), P0026F07.19 mRNA
          Length = 1924

 Score =  133 bits (67), Expect = 9e-28
 Identities = 169/203 (83%)
 Strand = Plus / Minus

                                                                        
Query: 232  gaatcaaggtacccgtagaaccgtcgacgactgtactggaggaggctgctatagttgcga 291
            |||||||||||   |||||||||| | ||  ||||||||||||||||||||||| | |||
Sbjct: 1489 gaatcaaggtatgagtagaaccgtagccggttgtactggaggaggctgctataggtccga 1430

                                                                        
Query: 292  tcatgcacgctgacaaagagagcctcggtgtcaggactgaacgatatgccggcaatctca 351
            ||||| || | ||  || |||||||||||||| ||||||||||| ||||| | |||||||
Sbjct: 1429 tcatgaacaccgatgaacagagcctcggtgtcgggactgaacgaaatgccagaaatctca 1370

                                                                        
Query: 352  ccaaagaagtccagctcctgcttcctgtcgtacccgctcccgacgtcgaagatgtggatg 411
            |||||||| |||| | ||||||||||   ||||||||| ||||||||||| || || | |
Sbjct: 1369 ccaaagaaatccaccacctgcttccttcggtacccgcttccgacgtcgaatatatgaacg 1310

                                   
Query: 412  aagtctgcagcttcggccattgc 434
            || ||||| | ||| ||||||||
Sbjct: 1309 aaatctgctggttccgccattgc 1287
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  133 bits (67), Expect = 9e-28
 Identities = 169/203 (83%)
 Strand = Plus / Minus

                                                                            
Query: 232      gaatcaaggtacccgtagaaccgtcgacgactgtactggaggaggctgctatagttgcga 291
                |||||||||||   |||||||||| | ||  ||||||||||||||||||||||| | |||
Sbjct: 24571679 gaatcaaggtatgagtagaaccgtagccggttgtactggaggaggctgctataggtccga 24571620

                                                                            
Query: 292      tcatgcacgctgacaaagagagcctcggtgtcaggactgaacgatatgccggcaatctca 351
                ||||| || | ||  || |||||||||||||| ||||||||||| ||||| | |||||||
Sbjct: 24571619 tcatgaacaccgatgaacagagcctcggtgtcgggactgaacgaaatgccagaaatctca 24571560

                                                                            
Query: 352      ccaaagaagtccagctcctgcttcctgtcgtacccgctcccgacgtcgaagatgtggatg 411
                |||||||| |||| | ||||||||||   ||||||||| ||||||||||| || || | |
Sbjct: 24571559 ccaaagaaatccaccacctgcttccttcggtacccgcttccgacgtcgaatatatgaacg 24571500

                                       
Query: 412      aagtctgcagcttcggccattgc 434
                || ||||| | ||| ||||||||
Sbjct: 24571499 aaatctgctggttccgccattgc 24571477
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>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0026F07
          Length = 137354

 Score =  133 bits (67), Expect = 9e-28
 Identities = 169/203 (83%)
 Strand = Plus / Minus

                                                                         
Query: 232   gaatcaaggtacccgtagaaccgtcgacgactgtactggaggaggctgctatagttgcga 291
             |||||||||||   |||||||||| | ||  ||||||||||||||||||||||| | |||
Sbjct: 79939 gaatcaaggtatgagtagaaccgtagccggttgtactggaggaggctgctataggtccga 79880

                                                                         
Query: 292   tcatgcacgctgacaaagagagcctcggtgtcaggactgaacgatatgccggcaatctca 351
             ||||| || | ||  || |||||||||||||| ||||||||||| ||||| | |||||||
Sbjct: 79879 tcatgaacaccgatgaacagagcctcggtgtcgggactgaacgaaatgccagaaatctca 79820

                                                                         
Query: 352   ccaaagaagtccagctcctgcttcctgtcgtacccgctcccgacgtcgaagatgtggatg 411
             |||||||| |||| | ||||||||||   ||||||||| ||||||||||| || || | |
Sbjct: 79819 ccaaagaaatccaccacctgcttccttcggtacccgcttccgacgtcgaatatatgaacg 79760

                                    
Query: 412   aagtctgcagcttcggccattgc 434
             || ||||| | ||| ||||||||
Sbjct: 79759 aaatctgctggttccgccattgc 79737
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>dbj|AK121435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140A17, full
            insert sequence
          Length = 1924

 Score =  133 bits (67), Expect = 9e-28
 Identities = 169/203 (83%)
 Strand = Plus / Minus

                                                                        
Query: 232  gaatcaaggtacccgtagaaccgtcgacgactgtactggaggaggctgctatagttgcga 291
            |||||||||||   |||||||||| | ||  ||||||||||||||||||||||| | |||
Sbjct: 1489 gaatcaaggtatgagtagaaccgtagccggttgtactggaggaggctgctataggtccga 1430

                                                                        
Query: 292  tcatgcacgctgacaaagagagcctcggtgtcaggactgaacgatatgccggcaatctca 351
            ||||| || | ||  || |||||||||||||| ||||||||||| ||||| | |||||||
Sbjct: 1429 tcatgaacaccgatgaacagagcctcggtgtcgggactgaacgaaatgccagaaatctca 1370

                                                                        
Query: 352  ccaaagaagtccagctcctgcttcctgtcgtacccgctcccgacgtcgaagatgtggatg 411
            |||||||| |||| | ||||||||||   ||||||||| ||||||||||| || || | |
Sbjct: 1369 ccaaagaaatccaccacctgcttccttcggtacccgcttccgacgtcgaatatatgaacg 1310

                                   
Query: 412  aagtctgcagcttcggccattgc 434
            || ||||| | ||| ||||||||
Sbjct: 1309 aaatctgctggttccgccattgc 1287
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>dbj|AK112033.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-C09, full
            insert sequence
          Length = 1716

 Score =  133 bits (67), Expect = 9e-28
 Identities = 169/203 (83%)
 Strand = Plus / Minus

                                                                        
Query: 232  gaatcaaggtacccgtagaaccgtcgacgactgtactggaggaggctgctatagttgcga 291
            |||||||||||   |||||||||| | ||  ||||||||||||||||||||||| | |||
Sbjct: 1478 gaatcaaggtatgagtagaaccgtagccggttgtactggaggaggctgctataggtccga 1419

                                                                        
Query: 292  tcatgcacgctgacaaagagagcctcggtgtcaggactgaacgatatgccggcaatctca 351
            ||||| || | ||  || |||||||||||||| ||||||||||| ||||| | |||||||
Sbjct: 1418 tcatgaacaccgatgaacagagcctcggtgtcgggactgaacgaaatgccagaaatctca 1359

                                                                        
Query: 352  ccaaagaagtccagctcctgcttcctgtcgtacccgctcccgacgtcgaagatgtggatg 411
            |||||||| |||| | ||||||||||   ||||||||| ||||||||||| || || | |
Sbjct: 1358 ccaaagaaatccaccacctgcttccttcggtacccgcttccgacgtcgaatatatgaacg 1299

                                   
Query: 412  aagtctgcagcttcggccattgc 434
            || ||||| | ||| ||||||||
Sbjct: 1298 aaatctgctggttccgccattgc 1276
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>ref|XM_474099.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 5163

 Score =  125 bits (63), Expect = 2e-25
 Identities = 102/115 (88%)
 Strand = Plus / Minus

                                                                        
Query: 592  agctgaccgaagtgcagattgactgctgggagtagagaccgtttatgggattcacgaaat 651
            ||||||| |||||||| |||||||||||||| |||||||| | |||||||| ||| || |
Sbjct: 5161 agctgacagaagtgcaaattgactgctgggaatagagaccatgtatgggatgcacaaagt 5102

                                                                   
Query: 652  gctgcttgctttttctgcgctttgaaaccactgtaaatccctctgtatccttctc 706
            ||||||||||| |||| || |||||||| ||||||||||| ||||||||||||||
Sbjct: 5101 gctgcttgcttcttctacgttttgaaactactgtaaatccttctgtatccttctc 5047
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>emb|AL606445.2|OSJN00018 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070O11,
             complete sequence
          Length = 134231

 Score =  125 bits (63), Expect = 2e-25
 Identities = 102/115 (88%)
 Strand = Plus / Minus

                                                                         
Query: 592   agctgaccgaagtgcagattgactgctgggagtagagaccgtttatgggattcacgaaat 651
             ||||||| |||||||| |||||||||||||| |||||||| | |||||||| ||| || |
Sbjct: 24839 agctgacagaagtgcaaattgactgctgggaatagagaccatgtatgggatgcacaaagt 24780

                                                                    
Query: 652   gctgcttgctttttctgcgctttgaaaccactgtaaatccctctgtatccttctc 706
             ||||||||||| |||| || |||||||| ||||||||||| ||||||||||||||
Sbjct: 24779 gctgcttgcttcttctacgttttgaaactactgtaaatccttctgtatccttctc 24725
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  125 bits (63), Expect = 2e-25
 Identities = 102/115 (88%)
 Strand = Plus / Minus

                                                                            
Query: 592      agctgaccgaagtgcagattgactgctgggagtagagaccgtttatgggattcacgaaat 651
                ||||||| |||||||| |||||||||||||| |||||||| | |||||||| ||| || |
Sbjct: 32881990 agctgacagaagtgcaaattgactgctgggaatagagaccatgtatgggatgcacaaagt 32881931

                                                                       
Query: 652      gctgcttgctttttctgcgctttgaaaccactgtaaatccctctgtatccttctc 706
                ||||||||||| |||| || |||||||| ||||||||||| ||||||||||||||
Sbjct: 32881930 gctgcttgcttcttctacgttttgaaactactgtaaatccttctgtatccttctc 32881876
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>dbj|AK100454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091D11, full
            insert sequence
          Length = 2669

 Score =  125 bits (63), Expect = 2e-25
 Identities = 102/115 (88%)
 Strand = Plus / Minus

                                                                        
Query: 592  agctgaccgaagtgcagattgactgctgggagtagagaccgtttatgggattcacgaaat 651
            ||||||| |||||||| |||||||||||||| |||||||| | |||||||| ||| || |
Sbjct: 2466 agctgacagaagtgcaaattgactgctgggaatagagaccatgtatgggatgcacaaagt 2407

                                                                   
Query: 652  gctgcttgctttttctgcgctttgaaaccactgtaaatccctctgtatccttctc 706
            ||||||||||| |||| || |||||||| ||||||||||| ||||||||||||||
Sbjct: 2406 gctgcttgcttcttctacgttttgaaactactgtaaatccttctgtatccttctc 2352
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>emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811D08, complete
            sequence
          Length = 123337

 Score =  125 bits (63), Expect = 2e-25
 Identities = 102/115 (88%)
 Strand = Plus / Minus

                                                                        
Query: 592  agctgaccgaagtgcagattgactgctgggagtagagaccgtttatgggattcacgaaat 651
            ||||||| |||||||| |||||||||||||| |||||||| | |||||||| ||| || |
Sbjct: 5081 agctgacagaagtgcaaattgactgctgggaatagagaccatgtatgggatgcacaaagt 5022

                                                                   
Query: 652  gctgcttgctttttctgcgctttgaaaccactgtaaatccctctgtatccttctc 706
            ||||||||||| |||| || |||||||| ||||||||||| ||||||||||||||
Sbjct: 5021 gctgcttgcttcttctacgttttgaaactactgtaaatccttctgtatccttctc 4967
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>gb|BT016291.1| Zea mays clone Contig124 mRNA sequence
          Length = 687

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                 
Query: 319 gtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgc 372
           ||||| || ||||||||| ||||||  ||||| |||||||||||||||||||||
Sbjct: 293 gtgtctgggctgaacgatgtgccggatatctcgccaaagaagtccagctcctgc 240
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>gb|BT023993.1| Zea mays clone EL01N0409G03 mRNA sequence
          Length = 1294

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 319  gtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgc 372
            ||||| || ||||||||| ||||||  ||||| |||||||||||||||||||||
Sbjct: 1046 gtgtctgggctgaacgatgtgccggatatctcgccaaagaagtccagctcctgc 993
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>gb|AY106954.1| Zea mays PCO143990 mRNA sequence
          Length = 1884

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 319  gtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgc 372
            ||||| || ||||||||| ||||||  ||||| |||||||||||||||||||||
Sbjct: 1437 gtgtctgggctgaacgatgtgccggatatctcgccaaagaagtccagctcctgc 1384
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>gb|BT018990.1| Zea mays clone Contig475.F mRNA sequence
          Length = 1162

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 672 tttgaaaccactgtaaatccctctgtatccttc 704
           |||||||| ||||||||||||||||||||||||
Sbjct: 859 tttgaaacgactgtaaatccctctgtatccttc 827
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>gb|BT024112.1| Zea mays clone EL01N0513F07 mRNA sequence
          Length = 1924

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 672  tttgaaaccactgtaaatccctctgtatccttc 704
            |||||||| ||||||||||||||||||||||||
Sbjct: 1623 tttgaaacgactgtaaatccctctgtatccttc 1591
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>gb|AY108125.1| Zea mays PCO127778 mRNA sequence
          Length = 666

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 672 tttgaaaccactgtaaatccctctgtatccttc 704
           |||||||| ||||||||||||||||||||||||
Sbjct: 385 tttgaaacgactgtaaatccctctgtatccttc 353
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>ref|XM_467523.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1763

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 316  tcggtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgcttc 375
            |||||||| || ||||| || ||||| |  ||||||||||||||||||||||| ||| | 
Sbjct: 1517 tcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctcttgcctt 1458

                                              
Query: 376  ctgtcgtacccgctcccgacgtcgaagatgtgga 409
            |||  |||  | |||||||| ||||||| |||||
Sbjct: 1457 ctggtgtaatcactcccgacatcgaagacgtgga 1424
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>ref|XM_506946.1| PREDICTED Oryza sativa (japonica cultivar-group), P0654B04.16-1 mRNA
          Length = 1805

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 316  tcggtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgcttc 375
            |||||||| || ||||| || ||||| |  ||||||||||||||||||||||| ||| | 
Sbjct: 1559 tcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctcttgcctt 1500

                                              
Query: 376  ctgtcgtacccgctcccgacgtcgaagatgtgga 409
            |||  |||  | |||||||| ||||||| |||||
Sbjct: 1499 ctggtgtaatcactcccgacatcgaagacgtgga 1466
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>ref|XM_467524.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1983

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 316  tcggtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgcttc 375
            |||||||| || ||||| || ||||| |  ||||||||||||||||||||||| ||| | 
Sbjct: 1561 tcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctcttgcctt 1502

                                              
Query: 376  ctgtcgtacccgctcccgacgtcgaagatgtgga 409
            |||  |||  | |||||||| ||||||| |||||
Sbjct: 1501 ctggtgtaatcactcccgacatcgaagacgtgga 1468
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>gb|AY596536.1| Saccharum officinarum clone SCJFRZ2007F05, complete sequence
          Length = 1915

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 319  gtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgc 372
            ||||| || ||||||||  ||||||  ||||| |||||||||||||||||||||
Sbjct: 1434 gtgtctgggctgaacgacgtgccggatatctcgccaaagaagtccagctcctgc 1381
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                            
Query: 316      tcggtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgcttc 375
                |||||||| || ||||| || ||||| |  ||||||||||||||||||||||| ||| | 
Sbjct: 29953403 tcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctcttgcctt 29953462

                                                  
Query: 376      ctgtcgtacccgctcccgacgtcgaagatgtgga 409
                |||  |||  | |||||||| ||||||| |||||
Sbjct: 29953463 ctggtgtaatcactcccgacatcgaagacgtgga 29953496
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>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0654B04
          Length = 156907

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                         
Query: 316   tcggtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgcttc 375
             |||||||| || ||||| || ||||| |  ||||||||||||||||||||||| ||| | 
Sbjct: 53679 tcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctcttgcctt 53738

                                               
Query: 376   ctgtcgtacccgctcccgacgtcgaagatgtgga 409
             |||  |||  | |||||||| ||||||| |||||
Sbjct: 53739 ctggtgtaatcactcccgacatcgaagacgtgga 53772
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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1008_D06
          Length = 112768

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                          
Query: 316    tcggtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgcttc 375
              |||||||| || ||||| || ||||| |  ||||||||||||||||||||||| ||| | 
Sbjct: 110368 tcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctcttgcctt 110427

                                                
Query: 376    ctgtcgtacccgctcccgacgtcgaagatgtgga 409
              |||  |||  | |||||||| ||||||| |||||
Sbjct: 110428 ctggtgtaatcactcccgacatcgaagacgtgga 110461
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>dbj|AK112042.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D04, full
           insert sequence
          Length = 1262

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                       
Query: 316 tcggtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgcttc 375
           |||||||| || ||||| || ||||| |  ||||||||||||||||||||||| ||| | 
Sbjct: 822 tcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctcttgcctt 763

                                             
Query: 376 ctgtcgtacccgctcccgacgtcgaagatgtgga 409
           |||  |||  | |||||||| ||||||| |||||
Sbjct: 762 ctggtgtaatcactcccgacatcgaagacgtgga 729
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>dbj|AK111973.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A04, full
           insert sequence
          Length = 943

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                       
Query: 316 tcggtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgcttc 375
           |||||||| || ||||| || ||||| |  ||||||||||||||||||||||| ||| | 
Sbjct: 696 tcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctcttgcctt 637

                                             
Query: 376 ctgtcgtacccgctcccgacgtcgaagatgtgga 409
           |||  |||  | |||||||| ||||||| |||||
Sbjct: 636 ctggtgtaatcactcccgacatcgaagacgtgga 603
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>dbj|AK111669.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154D17, full
            insert sequence
          Length = 1983

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 316  tcggtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgcttc 375
            |||||||| || ||||| || ||||| |  ||||||||||||||||||||||| ||| | 
Sbjct: 1561 tcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctcttgcctt 1502

                                              
Query: 376  ctgtcgtacccgctcccgacgtcgaagatgtgga 409
            |||  |||  | |||||||| ||||||| |||||
Sbjct: 1501 ctggtgtaatcactcccgacatcgaagacgtgga 1468
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>dbj|AK111506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D05, full
            insert sequence
          Length = 1806

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 316  tcggtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgcttc 375
            |||||||| || ||||| || ||||| |  ||||||||||||||||||||||| ||| | 
Sbjct: 1559 tcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctcttgcctt 1500

                                              
Query: 376  ctgtcgtacccgctcccgacgtcgaagatgtgga 409
            |||  |||  | |||||||| ||||||| |||||
Sbjct: 1499 ctggtgtaatcactcccgacatcgaagacgtgga 1466
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>dbj|AK098883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H19, full
            insert sequence
          Length = 1764

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 316  tcggtgtcaggactgaacgatatgccggcaatctcaccaaagaagtccagctcctgcttc 375
            |||||||| || ||||| || ||||| |  ||||||||||||||||||||||| ||| | 
Sbjct: 1517 tcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctcttgcctt 1458

                                              
Query: 376  ctgtcgtacccgctcccgacgtcgaagatgtgga 409
            |||  |||  | |||||||| ||||||| |||||
Sbjct: 1457 ctggtgtaatcactcccgacatcgaagacgtgga 1424
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>ref|XM_686796.1| PREDICTED: Danio rerio similar to CG2488-PB, isoform B (LOC563436),
            partial mRNA
          Length = 1945

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 589  ctcagctgaccgaagtgcagat 610
            ||||||||||||||||||||||
Sbjct: 1346 ctcagctgaccgaagtgcagat 1325
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>gb|BT017359.1| Zea mays clone EL01N0324C06.c mRNA sequence
          Length = 973

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 672 tttgaaaccactgtaaatccctctgtatccttc 704
           |||||||| || || ||||||||||||||||||
Sbjct: 659 tttgaaacgacagtgaatccctctgtatccttc 627
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>gb|AC150664.2| Bos taurus  BAC CH240-244O10 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 158286

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   ctttgtagctttgctttggtt 135
             |||||||||||||||||||||
Sbjct: 36247 ctttgtagctttgctttggtt 36227
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>gb|AY107172.1| Zea mays PCO127780 mRNA sequence
          Length = 685

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 672 tttgaaaccactgtaaatccctctgtatccttc 704
           |||||||| || || ||||||||||||||||||
Sbjct: 309 tttgaaacgacagtgaatccctctgtatccttc 277
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>gb|AC115690.13| Mus musculus chromosome 12, clone RP24-537M9, complete sequence
          Length = 178140

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 583   agcaacctcagctgaccgaagtgc 606
             ||||| ||||||||||||||||||
Sbjct: 31286 agcaaactcagctgaccgaagtgc 31309
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>gb|AC166654.1| Mus musculus BAC clone RP23-426B21 from chromosome 17, complete sequence
          Length = 185609

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 363    cagctcctgcttcctgtcgt 382
              ||||||||||||||||||||
Sbjct: 120743 cagctcctgcttcctgtcgt 120724
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>emb|CR382378.12| Zebrafish DNA sequence from clone DKEYP-40G12 in linkage group 7,
              complete sequence
          Length = 198471

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     aacaacaggctgtcagtttg 98
              ||||||||||||||||||||
Sbjct: 129163 aacaacaggctgtcagtttg 129144
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>emb|BX323855.5| Zebrafish DNA sequence from clone CH211-134O20 in linkage group 7,
              complete sequence
          Length = 124192

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 472    atggctcccatctgaatata 491
              ||||||||||||||||||||
Sbjct: 112330 atggctcccatctgaatata 112311
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>gb|AC098655.2| Homo sapiens chromosome 1 clone RP11-293P10, complete sequence
          Length = 191978

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ctggcttacaaaagagacat 37
             ||||||||||||||||||||
Sbjct: 44848 ctggcttacaaaagagacat 44829
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>gb|AC104320.2| Homo sapiens chromosome 8 clone CTD-2204N4 map 8p21-p11, complete
             sequence
          Length = 134133

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 676   aaaccactgtaaatccctct 695
             ||||||||||||||||||||
Sbjct: 64237 aaaccactgtaaatccctct 64256
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>gb|AC099672.2| Homo sapiens chromosome 1 clone RP11-286H10, complete sequence
          Length = 166441

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    ctggcttacaaaagagacat 37
             ||||||||||||||||||||
Sbjct: 62527 ctggcttacaaaagagacat 62546
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>gb|AC090740.5| Homo sapiens chromosome 8, clone RP11-595O22, complete sequence
          Length = 184838

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 676   aaaccactgtaaatccctct 695
             ||||||||||||||||||||
Sbjct: 21740 aaaccactgtaaatccctct 21759
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>gb|AC159204.2| Mus musculus BAC clone RP23-229H13 from chromosome 12, complete sequence
          Length = 211156

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 520    aagagcaaagtaagcaatac 539
              ||||||||||||||||||||
Sbjct: 174385 aagagcaaagtaagcaatac 174366
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>gb|AC159198.2| Mus musculus BAC clone RP23-388C15 from chromosome 12, complete
             sequence
          Length = 213311

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 583   agcaacctcagctgaccgaagtgc 606
             ||||| ||||||||||||||||||
Sbjct: 26472 agcaaactcagctgaccgaagtgc 26449
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>gb|AC154485.2| Mus musculus BAC clone RP24-117M9 from chromosome 12, complete sequence
          Length = 154864

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 520    aagagcaaagtaagcaatac 539
              ||||||||||||||||||||
Sbjct: 141384 aagagcaaagtaagcaatac 141403
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>gb|AC105279.3| Homo sapiens chromosome 1 clone RP5-1153M13, complete sequence
          Length = 104714

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    ctggcttacaaaagagacat 37
             ||||||||||||||||||||
Sbjct: 71213 ctggcttacaaaagagacat 71232
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>gb|AC154310.2| Mus musculus BAC clone RP23-358E14 from chromosome 13, complete
             sequence
          Length = 176209

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 108   accacacctttgtagctttgcttt 131
             ||||||||| ||||||||||||||
Sbjct: 31360 accacacctctgtagctttgcttt 31383
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>emb|AL954135.7| Mouse DNA sequence from clone RP23-231H10 on chromosome 4, complete
             sequence
          Length = 100102

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   cagatctcaggaagtgcagc 585
             ||||||||||||||||||||
Sbjct: 47410 cagatctcaggaagtgcagc 47429
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>emb|CT009728.8| Mouse DNA sequence from clone RP23-57I20 on chromosome 13, complete
             sequence
          Length = 202072

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 108   accacacctttgtagctttgcttt 131
             ||||||||| ||||||||||||||
Sbjct: 66544 accacacctctgtagctttgcttt 66521


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,427,486
Number of Sequences: 3902068
Number of extensions: 5427486
Number of successful extensions: 109006
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108845
Number of HSP's gapped (non-prelim): 161
length of query: 709
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 686
effective length of database: 17,143,297,704
effective search space: 11760302224944
effective search space used: 11760302224944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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