ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 95 2e-19
2EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 88 3e-17
3APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 74 5e-13
4APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 60 7e-09
5GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX) ... 34 0.33
6DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-) 34 0.33
7RPC1_GIALA (P25202) DNA-directed RNA polymerase III largest subu... 32 2.1
8PHCA2_FREDI (P08040) C-phycocyanin-2 alpha chain 30 4.8
9MAOC_FLATR (P22178) NADP-dependent malic enzyme, chloroplast pre... 30 6.2
10NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytopl... 30 6.2

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
 Frame = -3

Query: 646 GAMYIVIPGVLPVGCFPIYLTLYQTSNAGDYDQYGCLKRFNALSSRHNSLLQSKVTSLQS 467
           G  Y  I    P+GC    +  +  + A D+D +GC+   N L+ + N  L+  V  L+S
Sbjct: 210 GGRYFWIHNTGPIGCLAYVIERFP-NKASDFDSHGCVSPLNHLAQQFNHALKQAVIELRS 268

Query: 466 KYPYAKIMYADFYSHVFDMVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSG----- 302
               A I Y D YS   ++      +GF  +L +CCG  GGKYNY  G  CGM       
Sbjct: 269 SLSEAAITYVDVYSLKHELFVHAQGHGFKGSLVSCCG-HGGKYNYNKGIGCGMKKIVKGK 327

Query: 301 ----ASACGNPSSSLSWDGIHLTEAAYKKIAD 218
                  C  P  ++ WDG+H T+AA K I D
Sbjct: 328 EVYIGKPCDEPDKAVVWDGVHFTQAANKFIFD 359



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
 Frame = -3

Query: 649 LGAMYIVIPGVLPVGCFPIYLTLYQTSNAGDYDQYGCLKRFNALSSRHNSLLQSKVTSLQ 470
           LGA    I    P+GC    LT +  +   + D  GC K +N ++   N  L+  V  L+
Sbjct: 213 LGARTFWIHNTGPIGCLSFILTYFPWA---EKDSAGCAKAYNEVAQHFNHKLKEIVAQLR 269

Query: 469 SKYPYAKIMYADFYSHVFDMVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSGAS-- 296
              P A  ++ D YS  + +   P  +GF   L  CCG  GGKYN+   A CG +  +  
Sbjct: 270 KDLPLATFVHVDIYSVKYSLFSEPEKHGFEFPLITCCGY-GGKYNFSVTAPCGDTVTADD 328

Query: 295 -------ACGNPSSSLSWDGIHLTEAAYKKIADGWVNGPYCHPAI 182
                  +C  PS  ++WDG H TEAA +   D    G +  P +
Sbjct: 329 GTKIVVGSCACPSVRVNWDGAHYTEAANEYFFDQISTGAFSDPPV 373



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 46/141 (32%), Positives = 63/141 (44%)
 Frame = -3

Query: 646 GAMYIVIPGVLPVGCFPIYLTLYQTSNAGDYDQYGCLKRFNALSSRHNSLLQSKVTSLQS 467
           GA  I + G  P+GC P      +           C +  N  S   NS L   +  L  
Sbjct: 393 GARRIGVIGTPPLGCVPSQRLKKKKI---------CNEELNYASQLFNSKLLLILGQLSK 443

Query: 466 KYPYAKIMYADFYSHVFDMVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSGASACG 287
             P +  +Y D Y+ +  M+++PA+YGF    + CC  G        GA C  S +  C 
Sbjct: 444 TLPNSTFVYMDIYTIISQMLETPAAYGFEETKKPCCKTG----LLSAGALCKKSTSKICP 499

Query: 286 NPSSSLSWDGIHLTEAAYKKI 224
           N SS L WDG+H T+ AYK I
Sbjct: 500 NTSSYLFWDGVHPTQRAYKTI 520



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 42/139 (30%), Positives = 57/139 (41%)
 Frame = -3

Query: 646 GAMYIVIPGVLPVGCFPIYLTLYQTSNAGDYDQYGCLKRFNALSSRHNSLLQSKVTSLQS 467
           GA  I + G  P+GC P      +           C +  N  +   NS L   +  L  
Sbjct: 310 GARRIGVIGTPPIGCTPSQRVKKKKI---------CNEDLNYAAQLFNSKLVIILGQLSK 360

Query: 466 KYPYAKIMYADFYSHVFDMVKSPASYGFSTNLRACCGAGGGKYNYQNGARCGMSGASACG 287
             P + I+Y D YS    M++SP  YGF    + CC  G  K     G  C         
Sbjct: 361 TLPNSTIVYGDIYSIFSKMLESPEDYGFEEIKKPCCKIGLTK----GGVFCKERTLKNMS 416

Query: 286 NPSSSLSWDGIHLTEAAYK 230
           N SS L WDG+H ++ AY+
Sbjct: 417 NASSYLFWDGLHPSQRAYE 435



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>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)|
           (Endo-1,4-beta-glucanase) (Cellulase) (Fragment)
          Length = 224

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -3

Query: 280 SSSLSWDGIHLTEAAYKKIADGW 212
           ++ +SWDG+HL+E  Y KIA+ W
Sbjct: 111 NTDISWDGLHLSEIGYTKIANIW 133



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>DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 630

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = -3

Query: 415 DMVKSPASYG---FSTNLRACCGAGGGKYNYQNGARCGMSG----ASACGNPSSSLSW 263
           D  K   SYG    S+N      +GGG  +  NG   G SG    +S+ GNPS+S SW
Sbjct: 572 DFRKQGGSYGGGASSSNWGGSSSSGGGWGSSNNGGYSGYSGRSNGSSSYGNPSASNSW 629



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>RPC1_GIALA (P25202) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)|
          Length = 1741

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 37/145 (25%), Positives = 51/145 (35%), Gaps = 11/145 (7%)
 Frame = -3

Query: 616  LPVGCFPIYLTLYQTS-------NAGDYDQYGCL-KRFNALSSRHNSLLQSKVTSLQSKY 461
            L  G FP+ L  Y+         N   Y Q  CL +R N  S    S+L    T+     
Sbjct: 1193 LAEGAFPVLLDRYKAEAELDVLLNKDFYGQEACLIERSNVTSYFQQSILPKLTTNTHIAT 1252

Query: 460  PYAKIMYADFYSHVFDMVKSPASYGFSTNLRACCGAGGGKY---NYQNGARCGMSGASAC 290
              A  + A F      + K      F   +R        KY   N + G+ CG   A + 
Sbjct: 1253 TVAPALAASFLQTT--LTKKDID-DFLRQVRR-------KYIRLNLEPGSPCGAVAAQSV 1302

Query: 289  GNPSSSLSWDGIHLTEAAYKKIADG 215
            G PS+ ++    H    A   I  G
Sbjct: 1303 GEPSTQMTLKSFHHAGLASMNITQG 1327



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>PHCA2_FREDI (P08040) C-phycocyanin-2 alpha chain|
          Length = 162

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -3

Query: 523 ALSSRHNSLLQSKVTSLQSKYPYAKIMYA-DFYSHVFDMVKSPASYGFSTNLRACCGAGG 347
           ALSS+ NSL Q  V ++  K+PY   M   +F S      K     G+   +   C   G
Sbjct: 43  ALSSKANSLAQGAVNAVYQKFPYTTQMQGKNFASDQRGKDKCARDIGYYIRIVTYCLVAG 102

Query: 346 G 344
           G
Sbjct: 103 G 103



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>MAOC_FLATR (P22178) NADP-dependent malic enzyme, chloroplast precursor (EC|
           1.1.1.40) (NADP-ME)
          Length = 648

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
 Frame = -3

Query: 643 AMYIVIPGVLPVGCFPIYLTLYQTSN---AGDYDQYGCLKRFNALSSRHNSLLQSKVTSL 473
           A+Y  + GV P  C PI + +  T+N     D + Y  LK+  A    +  L+   ++++
Sbjct: 268 ALYTALGGVRPSACLPITIDV-GTNNEKLLNDDEFYIGLKQKRAAGQEYAELMNEFMSAV 326

Query: 472 QSKY-PYAKIMYADFYSH-VFDMVK 404
           +  Y     I + DF +H  FD+++
Sbjct: 327 KQNYGENLLIQFEDFANHNAFDLLE 351



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>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc)
          Length = 943

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
 Frame = -3

Query: 556 YDQYGCLKRFNALSSRHNSLLQSKVTSLQSKY--PYAKIMYADFYSHVFDMVKSPASYGF 383
           Y    CL   ++LSSR      S+ +S +S Y  PYA    + + S       +    GF
Sbjct: 165 YRDPSCLSPASSLSSRS---CNSEASSYESNYSYPYASPQTSPWQSPCVSPKTTDPEEGF 221

Query: 382 STNLRACCGAGGGKYNYQNGARCGMSGASACGNPSS 275
              L AC   G  +++     R  ++  S  G  SS
Sbjct: 222 PRGLGACTLLGSPRHSPSTSPRASVTEESWLGARSS 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,064,127
Number of Sequences: 219361
Number of extensions: 1490077
Number of successful extensions: 4696
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4680
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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