Clone Name | rbasd18g05 |
---|---|
Clone Library Name | barley_pub |
>emb|AL365223.19| Human DNA sequence from clone RP11-55K22 on chromosome 6 Contains the 3' end of the PEX7 gene for peroxisomal biogenesis factor 7 (PTS2R, RCDP1), a ribosomal protein L7a (RPL7A) pseudogene, a novel gene, the gene for a novel protein similar to 60s ribosomal protein L35a (RPL35A) (possible pseudogene), the 3' end of a novel gene and a CpG island, complete sequence Length = 116855 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 47 ctgaagaaaattaacaaaataaacat 72 |||||||||| ||||||||||||||| Sbjct: 5311 ctgaagaaaaataacaaaataaacat 5286
>emb|AL353651.11| Human DNA sequence from clone RP4-726F1 on chromosome 1p31.1-31.3 Contains a novel gene, complete sequence Length = 92141 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 48 tgaagaaaattaacaaaataaa 69 |||||||||||||||||||||| Sbjct: 1410 tgaagaaaattaacaaaataaa 1431
>gb|AC139037.10| Mus musculus chromosome 5, clone RP23-310J14, complete sequence Length = 194093 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 286 ttcattagagacagcttgacctgaa 310 |||| |||||||||||||||||||| Sbjct: 185499 ttcactagagacagcttgacctgaa 185523
>emb|CT030198.1| Platypus DNA sequence from clone XX-300J13, complete sequence Length = 149672 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 attaacaaaataaacatggta 76 ||||||||||||||||||||| Sbjct: 49895 attaacaaaataaacatggta 49875
>gb|AC122867.4| Mus musculus BAC clone RP23-146P6 from 8, complete sequence Length = 180742 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 agaaaattaacaaaataaaca 71 ||||||||||||||||||||| Sbjct: 37883 agaaaattaacaaaataaaca 37903
>gb|AC115631.4| Mus musculus BAC clone RP24-128K6 from 18, complete sequence Length = 179355 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 ctgaagaaaattaacaaaata 67 ||||||||||||||||||||| Sbjct: 94725 ctgaagaaaattaacaaaata 94705
>emb|CR660045.2|CNS0F89F Tetraodon nigroviridis full-length cDNA Length = 1368 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 gaagaaaattaacaaaataaa 69 ||||||||||||||||||||| Sbjct: 1273 gaagaaaattaacaaaataaa 1293
>gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's Hospital Oakland Research Institute) complete sequence Length = 241078 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 aaattaacaaaataaacatgg 74 ||||||||||||||||||||| Sbjct: 16761 aaattaacaaaataaacatgg 16781
>gb|AC027740.11| Mus musculus, clone RP23-57M1, complete sequence Length = 261093 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 ctgaagaaaattaacaaaata 67 ||||||||||||||||||||| Sbjct: 84124 ctgaagaaaattaacaaaata 84104
>gb|AC153725.3| Medicago truncatula clone mth2-78c5, complete sequence Length = 137377 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 attaacaaaataaacatggta 76 ||||||||||||||||||||| Sbjct: 23789 attaacaaaataaacatggta 23769
>gb|AC007233.7| Arabidopsis thaliana chromosome 2 clone T25M19 map ve013, complete sequence Length = 39858 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 gaagaaaattaacaaaataaa 69 ||||||||||||||||||||| Sbjct: 38770 gaagaaaattaacaaaataaa 38790
>gb|AC007170.6| Arabidopsis thaliana chromosome 2 clone T3P4 map mi310, complete sequence Length = 78568 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 gaagaaaattaacaaaataaa 69 ||||||||||||||||||||| Sbjct: 6513 gaagaaaattaacaaaataaa 6533
>emb|BX546494.9| Zebrafish DNA sequence from clone DKEYP-118A3 in linkage group 1, complete sequence Length = 174501 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 agaaaattaacaaaataaaca 71 ||||||||||||||||||||| Sbjct: 46457 agaaaattaacaaaataaaca 46437
>gb|AC087795.5|AC087795 Genomic Sequence for Mus musculus, clone RP23-181H5, complete sequence Length = 220811 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 ctgaagaaaattaacaaaata 67 ||||||||||||||||||||| Sbjct: 83496 ctgaagaaaattaacaaaata 83476
>gb|AC158152.4| Mus musculus chromosome 5, clone RP23-102E11, complete sequence Length = 220102 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 286 ttcattagagacagcttgacctgaa 310 |||| |||||||||||||||||||| Sbjct: 67249 ttcactagagacagcttgacctgaa 67273
>emb|AL772149.4| Mouse DNA sequence from clone RP23-108H7 on chromosome 2, complete sequence Length = 196676 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 agaaaattaacaaaataaaca 71 ||||||||||||||||||||| Sbjct: 187394 agaaaattaacaaaataaaca 187414
>gb|AC110510.6| Mus musculus chromosome 1, clone RP24-503F14, complete sequence Length = 198372 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 agcttgatctgaagacacag 425 |||||||||||||||||||| Sbjct: 162113 agcttgatctgaagacacag 162132 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 agcttgatctgaagacacag 209 |||||||||||||||||||| Sbjct: 162113 agcttgatctgaagacacag 162132
>ref|XM_001004077.1| PREDICTED: Mus musculus hypothetical protein LOC672498, transcript variant 2 (LOC672498), mRNA Length = 900 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 acctgaagacacaggtgcgtgaac 327 ||||||||||||||||| |||||| Sbjct: 49 acctgaagacacaggtgagtgaac 26
>gb|AC004879.2| Homo sapiens PAC clone RP4-755G17 from 7, complete sequence Length = 134904 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 aagaaaattaacaaaataaa 69 |||||||||||||||||||| Sbjct: 58067 aagaaaattaacaaaataaa 58048
>gb|AC110918.9| Mus musculus chromosome 5, clone RP23-189P23, complete sequence Length = 267946 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 aagaaaattaacaaaataaa 69 |||||||||||||||||||| Sbjct: 164951 aagaaaattaacaaaataaa 164932
>gb|AY935269.1| Antirrhinum majus plena (PLE) gene, complete sequence Length = 85060 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 aaaattaacaaaataaacat 72 |||||||||||||||||||| Sbjct: 10451 aaaattaacaaaataaacat 10432
>gb|AC110557.10| Mus musculus chromosome 5, clone RP23-250P16, complete sequence Length = 221232 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 aagaaaattaacaaaataaa 69 |||||||||||||||||||| Sbjct: 220864 aagaaaattaacaaaataaa 220845
>gb|AC128736.4| Mus musculus chromosome 15 clone RP24-331C19, complete sequence Length = 161710 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 tgaagaaaattaacaaaataaaca 71 |||||||||||| ||||||||||| Sbjct: 98935 tgaagaaaattaccaaaataaaca 98912
>gb|AC108460.5| Homo sapiens chromosome 11, clone CTD-2302A16, complete sequence Length = 149148 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gaaaattaacaaaataaaca 71 |||||||||||||||||||| Sbjct: 116614 gaaaattaacaaaataaaca 116595
>gb|AC093885.3| Homo sapiens BAC clone RP11-660P22 from 4, complete sequence Length = 173960 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tgaagaaaattaacaaaata 67 |||||||||||||||||||| Sbjct: 121264 tgaagaaaattaacaaaata 121245
>gb|AC114648.25| Mus musculus chromosome 8, clone RP24-144H17, complete sequence Length = 171191 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 304 acctgaagacacaggtgcgtgaac 327 ||||||||||||||||| |||||| Sbjct: 86386 acctgaagacacaggtgagtgaac 86409
>gb|AC021436.8| Homo sapiens chromosome , clone RP11-121C18, complete sequence Length = 180765 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gaaaattaacaaaataaaca 71 |||||||||||||||||||| Sbjct: 177003 gaaaattaacaaaataaaca 176984
>gb|AC091067.6| Homo sapiens chromosome 18, clone RP11-702M18, complete sequence Length = 172192 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 aaaattaacaaaataaacat 72 |||||||||||||||||||| Sbjct: 9320 aaaattaacaaaataaacat 9301
>gb|AC015861.7|AC015861 Homo sapiens, clone RP11-45A1, complete sequence Length = 151308 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 aaaattaacaaaataaacat 72 |||||||||||||||||||| Sbjct: 84783 aaaattaacaaaataaacat 84802
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 tgcctgaagaaaattaacaaaata 67 |||||||||| ||||||||||||| Sbjct: 30312494 tgcctgaagagaattaacaaaata 30312517
>gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete sequence Length = 263876 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 aggttgcctgaagaaaatta 59 |||||||||||||||||||| Sbjct: 153992 aggttgcctgaagaaaatta 154011
>gb|AC136365.5| Homo sapiens chromosome 8, clone RP11-97P4, complete sequence Length = 143756 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 tgaagaaaattaacaaaata 67 |||||||||||||||||||| Sbjct: 21405 tgaagaaaattaacaaaata 21424
>dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1121A12 Length = 138796 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 tgcctgaagaaaattaacaaaata 67 |||||||||| ||||||||||||| Sbjct: 113411 tgcctgaagagaattaacaaaata 113434
>gb|AC109199.10| Mus musculus chromosome 1, clone RP23-29D20, complete sequence Length = 194339 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 agcttgatctgaagacacag 425 |||||||||||||||||||| Sbjct: 422 agcttgatctgaagacacag 441 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 agcttgatctgaagacacag 209 |||||||||||||||||||| Sbjct: 422 agcttgatctgaagacacag 441
>dbj|AP005902.2| Homo sapiens genomic DNA, chromosome 8p11.21, clone: KB1582A10, complete sequence Length = 149577 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tgaagaaaattaacaaaata 67 |||||||||||||||||||| Sbjct: 74697 tgaagaaaattaacaaaata 74678
>emb|AL831778.8| Mouse DNA sequence from clone RP23-261L23 on chromosome 4, complete sequence Length = 213495 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gagacagcttgacctgaaga 312 |||||||||||||||||||| Sbjct: 160762 gagacagcttgacctgaaga 160743 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,239,287 Number of Sequences: 3902068 Number of extensions: 4239287 Number of successful extensions: 83474 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83336 Number of HSP's gapped (non-prelim): 138 length of query: 487 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 465 effective length of database: 17,147,199,772 effective search space: 7973447893980 effective search space used: 7973447893980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)