ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18g03 |
|---|---|
| Clone Library Name | barley_pub |
>RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4| Length = 211 Score = 91.3 bits (225), Expect = 3e-18 Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 1/154 (0%) Frame = -2 Query: 668 DDIRRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSPI 489 D +RR R S ES ++GD G++ +A N+R Q R + + Sbjct: 68 DTVRRSREHMR-SREESELKQFGDAG---GSSNEAANKR-------QGRASQNNSYDNKS 116 Query: 488 ADRRGSAPTTPGRSKMRPTG-RGDETPERGSAVPKFGDWDEKDPSTGEGFTDIFEKVREE 312 + S T G+S+ +PT R DE+PE+ + VPKFGDWDE +PS+ +G+T IF KVREE Sbjct: 117 PLHKNSYDGT-GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREE 175 Query: 311 KQSGADTVGTSHAYTGRYNRGERYESSGCSCFSW 210 + SGA+ G+S T + +R +S C CF + Sbjct: 176 RSSGANVSGSSRTPTHQSSRNPN-NTSSCCCFGF 208
>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2| Length = 902 Score = 39.3 bits (90), Expect = 0.012 Identities = 37/117 (31%), Positives = 48/117 (41%), Gaps = 10/117 (8%) Frame = -2 Query: 689 ERRATREDDIR-RHEAAARKSHAESPNHRYGDQAN---DDGAARKAGNERSPIHPRQQAR 522 +RRA RE R EAA + AE HR+ D+A + A ++ G P + A Sbjct: 127 QRRAVREAAERAEREAAEARRKAEDERHRHEDEAKRKAETEAKKRFGEGEQPASAARPAT 186 Query: 521 LANKGGVSSP--IADRRGSAPTTPGRSKMRPTGRGDETP----ERGSAVPKFGDWDE 369 A P A R G+ T PG + RP + P RG AV D DE Sbjct: 187 AAPAAPAPRPGAPAARPGTTTTRPGTTTARPATTTAQRPGAPAGRGPAVAAEPDEDE 243
>CPD1_DROME (P22058) Chromosomal protein D1| Length = 355 Score = 37.4 bits (85), Expect = 0.044 Identities = 30/136 (22%), Positives = 52/136 (38%) Frame = -2 Query: 656 RHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSPIADRR 477 R A++ + E P + + DG+ + N SP + + R + GG S Sbjct: 54 RPPKASKIQNDEDPEDEGEEDGDGDGSGAELANNSSPSPTKGRGRPKSSGGAGS----GS 109 Query: 476 GSAPTTPGRSKMRPTGRGDETPERGSAVPKFGDWDEKDPSTGEGFTDIFEKVREEKQSGA 297 G + TPG +K R GR P++ + D+ + G + E + G Sbjct: 110 GDSVKTPGSAKKRKAGR----PKKHQPSDSENEDDQDEDDDGN------SSIEERRPVGR 159 Query: 296 DTVGTSHAYTGRYNRG 249 + G+ + R RG Sbjct: 160 PSAGSVNLNISRTGRG 175
>SRBS1_HUMAN (Q9BX66) Sorbin and SH3 domain-containing protein 1 (Ponsin)| (c-Cbl-associated protein) (CAP) (SH3 domain protein 5) (SH3P12) Length = 1292 Score = 36.2 bits (82), Expect = 0.098 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = -2 Query: 692 DERRATREDD-----IRRHEAAARKSHAESPNHRYGDQAN-DDGAARKAGNERSP 546 D+RR RE + RRH H N R+GD N DD A RK+G+E P Sbjct: 743 DQRRLKREQEEADIAARRHTGVIPTHHQFITNERFGDLLNIDDTAKRKSGSEMRP 797
>K0553_HUMAN (Q9UKJ3) Protein KIAA0553| Length = 1089 Score = 36.2 bits (82), Expect = 0.098 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 3/111 (2%) Frame = -2 Query: 674 REDDIRRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSS 495 +E + H +K H +S H+ +A+ + + KA + +++ R NK S+ Sbjct: 253 KERSGKSHRHKKKKEHKKSSKHKRKPKADTEEKSSKAESGEKSKKRKKRKRKKNKS--SA 310 Query: 494 PIADRRGSAPTTPGRSKMRP---TGRGDETPERGSAVPKFGDWDEKDPSTG 351 P RG P PG P R + +R S + G +KD G Sbjct: 311 PADSERGPKPEPPGSGSPAPPRRRRRAQDDSQRRSLPAEEGSSGKKDEGGG 361 Score = 31.2 bits (69), Expect = 3.1 Identities = 42/166 (25%), Positives = 57/166 (34%), Gaps = 10/166 (6%) Frame = -2 Query: 695 RDERRATREDDIRRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLA 516 R R + R D + A+ K S H+Y +D + RS H R+++R Sbjct: 487 RSRRHSKRSHDSDDSDYASSKHR--SKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRSR 544 Query: 515 NKGGVSSPIADR--RGSAPTTP-----GRSKMRPTGRGDETPERGSAVPKFGDWDEKDPS 357 + SS R R S TT RS R R +P + S K W + P Sbjct: 545 GRSRSSSCSRSRSKRRSRSTTAHSWQRSRSYSRDRSRSTRSPSQRSGSRK-RSWGHESP- 602 Query: 356 TGEGFTDIFEKVREEKQSGADTVGTSHAYTGR---YNRGERYESSG 228 EE+ SG S Y + Y R R E G Sbjct: 603 -------------EERHSGRRDFIRSKIYRSQSPHYFRSGRGEGPG 635
>BCLF1_HUMAN (Q9NYF8) Bcl-2-associated transcription factor 1 (Btf)| Length = 920 Score = 35.8 bits (81), Expect = 0.13 Identities = 24/101 (23%), Positives = 46/101 (45%) Frame = -2 Query: 659 RRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSPIADR 480 RRH + R+ + S + + ++ +R + RS PR + ++ SP++ R Sbjct: 99 RRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKR 158 Query: 479 RGSAPTTPGRSKMRPTGRGDETPERGSAVPKFGDWDEKDPS 357 RGS +++ P +E+P + + + D E DPS Sbjct: 159 RGSQEKQTKKAEGEPQ---EESPLKSKSQEEPKDTFEHDPS 196 Score = 35.4 bits (80), Expect = 0.17 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = -2 Query: 629 HAESPNH---RYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSPIADRRGSAPTT 459 H+ S H R G + +G++R + ++ SPIH + ++ + IA + + Sbjct: 261 HSHSIQHSPERSGSGSVGNGSSRYSPSQNSPIH-----HIPSRRSPAKTIAPQNAPRDES 315 Query: 458 PGRSKMRPTGRGDETPERGSAVPKFGDWDEK 366 GRS P G ET + G + +F D + + Sbjct: 316 RGRSSFYPDGGDQETAKTGKFLKRFTDEESR 346
>BCLF1_MOUSE (Q8K019) Bcl-2-associated transcription factor 1 (Btf)| Length = 919 Score = 35.8 bits (81), Expect = 0.13 Identities = 24/101 (23%), Positives = 46/101 (45%) Frame = -2 Query: 659 RRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSPIADR 480 RRH + R+ + S + + ++ +R + RS PR + ++ SP++ R Sbjct: 99 RRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKR 158 Query: 479 RGSAPTTPGRSKMRPTGRGDETPERGSAVPKFGDWDEKDPS 357 RGS +++ P +E+P + + + D E DPS Sbjct: 159 RGSQEKQTKKAEGEPQ---EESPLKSKSQEEPKDTFEHDPS 196
>SRBS1_MOUSE (Q62417) Sorbin and SH3 domain-containing protein 1 (Ponsin)| (c-Cbl-associated protein) (CAP) (SH3 domain protein 5) (SH3P12) Length = 1290 Score = 34.7 bits (78), Expect = 0.28 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = -2 Query: 692 DERRATREDD-----IRRHEAAARKSHAESPNHRYGDQAN-DDGAARKAGNERSP 546 D+RR RE + RRH H N R+GD N DD A RK+G E P Sbjct: 999 DQRRLKREQEEADIAARRHTGVIPTHHQFITNERFGDLLNIDDTAKRKSGLEMRP 1053
>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1018 Score = 34.3 bits (77), Expect = 0.37 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 5/135 (3%) Frame = -2 Query: 695 RDERRATREDDIRRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLA 516 R+ R + R + KS SP+ + + + + + ERS R+++R Sbjct: 3 RESRHYRKRSSSRGRSGSLSKSR--SPDSKRSKKDDRTASRTHSRRERSRSRERRRSRER 60 Query: 515 NKGGVSSPIADRRGSAPTTPGRSKMRPTGRGDETPERGSAV---PKFGDWDEKDPSTGEG 345 + SS DRR S RSK R GR E PE G K + E++ + Sbjct: 61 KRQRRSS--RDRRRSRSRERRRSKSRSRGRSKEKPENGDQTADKKKIKEEKEEEKPEDQD 118 Query: 344 F--TDIFEKVREEKQ 306 F + E++R+ K+ Sbjct: 119 FDQNTLEEEMRKRKE 133
>Y737_DROME (P83475) Hypothetical protein CG31737 in chromosome 2| Length = 263 Score = 33.5 bits (75), Expect = 0.63 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 9/93 (9%) Frame = -2 Query: 638 RKSHAESPNHRYGDQANDDGAARKAGNERSPIH--------PRQQARLANKGGVSSPIAD 483 RK+ ++ NH Q+ + NER + P + A N+ GVSSP+ D Sbjct: 40 RKTDKDNNNHISTLQSVESVVTISDVNERHTTNHYKNHQSNPDEIAYTPNRSGVSSPVND 99 Query: 482 RRGSAPTTPGRSKMRPT-GRGDETPERGSAVPK 387 S+PT G + P G+G +P R +A P+ Sbjct: 100 -GASSPTQRGGTTPAPQGGKGGNSPSRVTAQPQ 131
>MBA2_ECOLI (P07112) Mobilization protein A| Length = 708 Score = 33.5 bits (75), Expect = 0.63 Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Frame = -2 Query: 692 DERRATREDDIRRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLAN 513 D R + ++I+RH+ + P H D G AG+E P R A Sbjct: 248 DHERNRQSEEIQRHQRVSGADRTAGPEH------GDTGRRSPAGHEPDPAGQRG----AG 297 Query: 512 KGGVSSPIADR--RGSAPTTPGRSKMRPTGRGDETPERGSAV 393 G SP DR G A R R E PER + V Sbjct: 298 GGVAESPAPDRGGMGGAGQRVAGGSRRGEQRRAERPERVAGV 339
>H6ST3_HUMAN (Q8IZP7) Heparan-sulfate 6-O-sulfotransferase 3 (EC 2.8.2.-)| (HS6ST-3) Length = 471 Score = 33.5 bits (75), Expect = 0.63 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 2/95 (2%) Frame = -2 Query: 533 QQARLANKGGVSSPIADRRGSAPTTPG--RSKMRPTGRGDETPERGSAVPKFGDWDEKDP 360 +Q R G + P RR AP R ++ P RG RG+A P+ D + DP Sbjct: 39 EQPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDP 98 Query: 359 STGEGFTDIFEKVREEKQSGADTVGTSHAYTGRYN 255 GE E+ +E A G+ + R+N Sbjct: 99 REGEE-----EEEEDEPDPEAPENGSLPRFVPRFN 128
>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 699 Score = 32.7 bits (73), Expect = 1.1 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Frame = -2 Query: 683 RATREDDIRRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKGG 504 R RE+D E +A H ++P+HR Q + G ++ + HP + ++ Sbjct: 421 RVPREED---EEVSAELGH-QAPSHRQSHQDEETGHGQRGSIKEMSHHPPGHTVVKDRSH 476 Query: 503 VSSPIADRRGSAPTTPGRSKMRPTGRGDETPERGSAVPKFG---DWDEKDPSTGEGFTDI 333 + ++ PG + DE+ E+G G DE+D G G + Sbjct: 477 LRKDDSEEEKEKEEDPGSHE-----EDDESSEQGEKGTHHGSRDQEDEEDEEEGHGLSLN 531 Query: 332 FEKVREE 312 E+ EE Sbjct: 532 QEEEEEE 538
>DNAK_METCA (Q607A5) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 641 Score = 32.0 bits (71), Expect = 1.8 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Frame = -2 Query: 671 EDDIRRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSP 492 E+D R HE + ++HA++ H + G + +G ER+ I GG + Sbjct: 524 EEDRRMHELVSARNHADAVVHATNKTLAELG-DKVSGEERAKIEAALNDLKDAMGGDNKD 582 Query: 491 IADRRGSAPT-TPGRSKMRPTGRGDETPERGSAVPKFGDWDEKDPSTGEGFTDI-FEKVR 318 + ++R SA T G+ R T + G+A + ++ S G+ D FE+VR Sbjct: 583 LIEQRTSALTELSGKLAERL-----YTQQGGTAGSETHSHEKAGGSGGDDVVDAEFEEVR 637 Query: 317 EEKQ 306 ++K+ Sbjct: 638 DDKR 641
>PTPRF_HUMAN (P10586) Receptor-type tyrosine-protein phosphatase F precursor (EC| 3.1.3.48) (LAR protein) (Leukocyte antigen related) Length = 1897 Score = 32.0 bits (71), Expect = 1.8 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -2 Query: 389 KFGDWDEKD-PSTGEGFTDIFEKVREEK-QSGADTVGTSHAYTG 264 +F DW E+ P TGEGF D +V + K Q G D T H G Sbjct: 1789 QFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAG 1832
>VENV_PRRSL (Q04565) Probable envelope protein (Membrane protein) (ORF6)| Length = 173 Score = 32.0 bits (71), Expect = 1.8 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Frame = +2 Query: 545 WVTSHCLLSSQRRRRWLG--HHIYG*ATRHAISGQRPRAYGCRLPG 676 ++TS C L RR L HH+ A H+IS RAY R PG Sbjct: 93 FITSRCRLCCLGRRYILAPAHHVESAAGLHSISASGNRAYAVRKPG 138
>ZCHC3_HUMAN (Q9NUD5) Zinc finger CCHC domain-containing protein 3| Length = 404 Score = 31.6 bits (70), Expect = 2.4 Identities = 27/96 (28%), Positives = 37/96 (38%) Frame = -2 Query: 692 DERRATREDDIRRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLAN 513 +ER+ R + AAR A+ + G A K G R P PR++ + Sbjct: 9 EERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEE-SG 67 Query: 512 KGGVSSPIADRRGSAPTTPGRSKMRPTGRGDETPER 405 GG S+ + G A P P GRGD R Sbjct: 68 GGGGSAGLGGPAGLA--APDLGDFPPAGRGDPKGRR 101
>RN126_HUMAN (Q9BV68) RING finger protein 126| Length = 326 Score = 31.6 bits (70), Expect = 2.4 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = +1 Query: 268 VYAWLVPTVSAPDCFSSLTFSNMSVKPSPVEG-SFSSQSPNFGTADPLSGVSSPRPVG 438 + WL S P C SLT N + P + G SFSS S + ++ P + ++ P+G Sbjct: 256 IVPWLEQHDSCPVCRKSLTGQNTATNPPGLTGVSFSSSSSSSSSSSPSNENATWSPLG 313
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 31.2 bits (69), Expect = 3.1 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 3/123 (2%) Frame = -2 Query: 659 RRHEAAARKSHAESPNH---RYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSPI 489 R E A + E P H R GD A + R HP + ++G + + Sbjct: 587 RSREGHAEEHQTEVPGHHQHRMGDTDTSAERGHPASSPRQQGHPPEDTVHHHRGSLKEEV 646 Query: 488 ADRRGSAPTTPGRSKMRPTGRGDETPERGSAVPKFGDWDEKDPSTGEGFTDIFEKVREEK 309 S+++ G +E ++G+ DE+D G G + E EE Sbjct: 647 GPESPGPAGVKDGSRVKRGGSEEEEEQKGTHHHSLE--DEEDEEEGHGRSLSQEDQEEED 704 Query: 308 QSG 300 + G Sbjct: 705 RRG 707
>MYSC_ACACA (P10569) Myosin IC heavy chain| Length = 1168 Score = 31.2 bits (69), Expect = 3.1 Identities = 19/51 (37%), Positives = 22/51 (43%) Frame = -2 Query: 533 QQARLANKGGVSSPIADRRGSAPTTPGRSKMRPTGRGDETPERGSAVPKFG 381 + R A GG P+ R G AP PGR P G G P G +P G Sbjct: 1055 KSGRAAPMGG-PGPMRGRGGPAPGGPGRGGAPPPGAGRAGPPGGRGMPAPG 1104
>KELC_ANOST (Q70JS2) Ring canal kelch homolog (Kelch-like protein 1) [Contains:| Kelch short protein] Length = 1499 Score = 31.2 bits (69), Expect = 3.1 Identities = 21/77 (27%), Positives = 33/77 (42%) Frame = +1 Query: 292 VSAPDCFSSLTFSNMSVKPSPVEGSFSSQSPNFGTADPLSGVSSPRPVGLILDLPGVVGA 471 V+ +S T S P S QS G +DP +G S+P+ L G G Sbjct: 1102 VNGTGASTSTTLGGKSTGAIPKISRKSKQSQQQGPSDPTAGTSAPQ------SLAGGNGL 1155 Query: 472 EPLRSAIGDETPPLFAS 522 P+ ++G P++A+ Sbjct: 1156 PPVDVSLGAPADPMYAN 1172
>PGBA_HELPJ (Q9ZLW8) Plasminogen-binding protein pgbA| Length = 450 Score = 31.2 bits (69), Expect = 3.1 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Frame = -2 Query: 695 RDERRATREDDIRRHEAAARKSHAESPNHRYGDQANDDGAA--RKA-----GNERSPIHP 537 ++ERR +R++ R+ A +K+ + D+ ++ RKA GNE+ ++ Sbjct: 299 KEERRRSRDE--RKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMDKGNEK--VNA 354 Query: 536 RQQARLANKGGVSSPIADRRGSAPTTPGRSKMRPTGRGDETPERGSAVPKFGDWDEKDPS 357 ++ R N+ + P ++ + T S ++ + E P+ S K +EK + Sbjct: 355 KENEREINQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKA 414 Query: 356 TGEGFTDIFEKVREEKQ 306 E FE+ E Q Sbjct: 415 KAEQRAREFEQRAREHQ 431
>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2| Length = 917 Score = 30.8 bits (68), Expect = 4.1 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Frame = -2 Query: 650 EAAARKSHAESPNHRYGDQANDDGAARKA--GNERSPIHPRQQA----RLANKGGVSSPI 489 + AAR+ A R +QA + AAR+A +P+ PR + +LA P+ Sbjct: 154 QQAAREQAAAEAAARAAEQAAAEAAAREAEEAARSAPLDPRSHSTGGVQLAAPVQRLRPL 213 Query: 488 ADR--RGSAPTTPGRSKMRPTGRGDETPERGSAVPKFGDWDEKDPS 357 A+R P P R R +ET S GD DE+ P+ Sbjct: 214 AERAIMPPRPVQPSRPAAAAPARNNETLHLRSGAAAGGD-DERRPA 258
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 30.8 bits (68), Expect = 4.1 Identities = 43/177 (24%), Positives = 66/177 (37%), Gaps = 17/177 (9%) Frame = -2 Query: 695 RDERRATREDDIRRHEAAARKSHAES-----------PNHRYGDQANDDGAA---RKAGN 558 +D +D RH +A ++H S P D+A+ +A R++G Sbjct: 299 QDRDSEGHSEDSERHSGSASRNHHGSAWEQSRDGSRHPRSHDEDRASHGHSADSSRQSGT 358 Query: 557 ERSPIHPRQQARLANKGGVSSPIADRRGSA-PTTPGRSKMRPTGRGDETPERGSAVPKFG 381 + R Q +++ SSP +R GS + S+ TGRG + SAV G Sbjct: 359 RHAETSSRGQTASSHEQARSSP-GERHGSGHQQSADSSRHSATGRG----QASSAVSDRG 413 Query: 380 DWDE--KDPSTGEGFTDIFEKVREEKQSGADTVGTSHAYTGRYNRGERYESSGCSCF 216 S EG ++ + A SH + R GER SG S + Sbjct: 414 HRGSSGSQASDSEGHSENSDTQSVSGHGKAGLRQQSHQESTRGRSGERSGRSGSSLY 470
>HRDB_STRCO (P18183) RNA polymerase principal sigma factor hrdB| Length = 511 Score = 30.4 bits (67), Expect = 5.4 Identities = 13/46 (28%), Positives = 20/46 (43%) Frame = -2 Query: 524 RLANKGGVSSPIADRRGSAPTTPGRSKMRPTGRGDETPERGSAVPK 387 R A K + P+ R+ +AP P P +E P + +A K Sbjct: 91 RTATKAVAAKPVTSRKATAPAAPAAPATEPAAVEEEAPAKKAAAKK 136
>C71A6_NEPRA (O04164) Cytochrome P450 71A6 (EC 1.14.-.-) (Fragment)| Length = 511 Score = 30.4 bits (67), Expect = 5.4 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Frame = +2 Query: 269 YMHGWCRQYLHRTASPPSPFQICQ*NLHQSKDPSHPSLQTLAQ---PILSLAFHRRGRLV 439 ++ W R Y +T P P NLHQ H SLQ+L++ P++ L F LV Sbjct: 14 FLKKWRRSYSGKTPPPSPPKLPVLGNLHQLGTFPHRSLQSLSRRYGPVMQLHFGSVPVLV 73 Query: 440 SS 445 +S Sbjct: 74 AS 75
>NFH_MOUSE (P19246) Neurofilament triplet H protein (200 kDa neurofilament| protein) (Neurofilament heavy polypeptide) (NF-H) Length = 1090 Score = 30.4 bits (67), Expect = 5.4 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 7/84 (8%) Frame = -2 Query: 674 REDDIRRHEAAARKSHAESPNH-------RYGDQANDDGAARKAGNERSPIHPRQQARLA 516 +E R E A A+SP + +A G A+ G +SP P+ A Sbjct: 511 KETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPK 570 Query: 515 NKGGVSSPIADRRGSAPTTPGRSK 444 + SP + + +PG +K Sbjct: 571 SPAEAKSPAEPKSPATVKSPGEAK 594
>HYPF2_RALEU (O07451) Carbamoyltransferase hypF2 (EC 2.1.3.-) (Carbamoyl| phosphate-converting enzyme hypF2) ([NiFe]-hydrogenase maturation factor hypF2) (Hydrogenase maturation protein hypF2) Length = 806 Score = 30.4 bits (67), Expect = 5.4 Identities = 21/66 (31%), Positives = 25/66 (37%) Frame = -2 Query: 602 GDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSPIADRRGSAPTTPGRSKMRPTGRG 423 GD G AG R + PR ARL GG DR P + + GRG Sbjct: 544 GDDGQAWGGETAAGGRRRLLAPRSLARLPLPGG------DRAAREPWRMAAAALHAMGRG 597 Query: 422 DETPER 405 +E R Sbjct: 598 EEIEGR 603
>IF2_SYMTH (Q67P86) Translation initiation factor IF-2| Length = 1044 Score = 30.4 bits (67), Expect = 5.4 Identities = 22/99 (22%), Positives = 40/99 (40%) Frame = -2 Query: 686 RRATREDDIRRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKG 507 R A + A A + A R ++A AA+ A E++ P Sbjct: 160 RPAAEAQPVAERRAPAEAAQAAQAERRPAEKAQPAAAAKAAPPEKAGAAP---------- 209 Query: 506 GVSSPIADRRGSAPTTPGRSKMRPTGRGDETPERGSAVP 390 V +A+++ +A TP ++ +P G+ ++T A P Sbjct: 210 -VPGAVAEQKQAA--TPAAAEQKPAGKAEQTAGAAQAKP 245
>LEAD7_GOSHI (P13939) Late embryogenesis abundant protein D-7 (LEA D-7)| Length = 136 Score = 30.0 bits (66), Expect = 7.0 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 3/109 (2%) Frame = -2 Query: 653 HEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSPIADRRG 474 HE + + AE H G+Q + + ++ + + A+ + RG Sbjct: 4 HEQSYKAGRAEGRAHEKGEQMKESMKEKAEAAKQKTMETAEAAKQKTMETAEAAKQKTRG 63 Query: 473 SAPTTPGRSKM---RPTGRGDETPERGSAVPKFGDWDEKDPSTGEGFTD 336 +A TT ++K G+ +ET E + EK + +G TD Sbjct: 64 AAETTNDKTKQTAGAARGKAEETKETSGGI--LQQAGEKVRNAAQGATD 110
>B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band 3-like| protein) (AE2 anion exchanger) (Solute carrier family 4 member 2) (B3RP) Length = 1237 Score = 30.0 bits (66), Expect = 7.0 Identities = 26/110 (23%), Positives = 42/110 (38%) Frame = -2 Query: 671 EDDIRRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSP 492 ED++R + + R G++ R G E H + + + P Sbjct: 35 EDELRTLGVERFEEILQEAGSRGGEEPG-----RSYGEEDFEYHRQSSHHIHHPLSTHLP 89 Query: 491 IADRRGSAPTTPGRSKMRPTGRGDETPERGSAVPKFGDWDEKDPSTGEGF 342 RR P PGR +P R +P + + G+ DE++ S EGF Sbjct: 90 PDARRRKTPQGPGR---KPRRRPGASPTGETPTIEEGEEDEEEASEAEGF 136
>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1840 Score = 30.0 bits (66), Expect = 7.0 Identities = 20/67 (29%), Positives = 23/67 (34%) Frame = -2 Query: 551 SPIHPRQQARLANKGGVSSPIADRRGSAPTTPGRSKMRPTGRGDETPERGSAVPKFGDWD 372 SP P G S + G +PT PG S P+ G TP G K G D Sbjct: 1775 SPSSPTYSPSSPYSSGASPDYSPSAGYSPTLPGYS---PSSTGQYTPHEGDKKDKTGKKD 1831 Query: 371 EKDPSTG 351 G Sbjct: 1832 ASKDDKG 1838
>BUR1_YARLI (Q6C842) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC| 2.7.11.23) Length = 706 Score = 30.0 bits (66), Expect = 7.0 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%) Frame = -2 Query: 653 HEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSPIADRRG 474 HE +S E NH+ +Q ++ + E+ P P ++ R ++ S P +R Sbjct: 349 HELPKWQSSHELDNHKRREQEKNESKVQPPPREKQP--PVREPRDRDRSRDSRPPRER-- 404 Query: 473 SAPTTPGRSKMRPTGRGD--ETPERGSAVPKFGDWD 372 R + P GR D E PER P+ G D Sbjct: 405 -----DSRDRRPPRGRYDSFERPERRPEGPRDGPRD 435
>PRP40_MOUSE (Q9R1C7) Pre-mRNA-processing factor 40 homolog A (Formin-binding| protein 3) (Formin-binding protein 11) (FBP 11) Length = 953 Score = 30.0 bits (66), Expect = 7.0 Identities = 22/99 (22%), Positives = 39/99 (39%) Frame = -2 Query: 659 RRHEAAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSPIADR 480 ++H ++K H + R G +++DD + K +RS H + SS Sbjct: 808 KKHSKKSKKHHRKRSRSRSGSESDDDDSHSKKKRQRSESHSASER--------SSSAESE 859 Query: 479 RGSAPTTPGRSKMRPTGRGDETPERGSAVPKFGDWDEKD 363 R + + K + ++PE + K D EKD Sbjct: 860 RSYKKSKKHKKKSKKRRHKSDSPESDTEREK--DKKEKD 896
>SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.21.-)| (Cucumisin-like serine protease) Length = 757 Score = 30.0 bits (66), Expect = 7.0 Identities = 22/68 (32%), Positives = 30/68 (44%) Frame = +1 Query: 283 VPTVSAPDCFSSLTFSNMSVKPSPVEGSFSSQSPNFGTADPLSGVSSPRPVGLILDLPGV 462 V T P S+ + + VKPSPV +FSS+ PN T + L V ++ G Sbjct: 461 VTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGA 520 Query: 463 VGAEPLRS 486 G L S Sbjct: 521 AGPTGLAS 528
>MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC LH)| [Contains: Micronuclear linker histone-alpha; Micronuclear linker histone-beta; Micronuclear linker histone-delta; Micronuclear linker histone-gamma] Length = 633 Score = 29.6 bits (65), Expect = 9.1 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = -2 Query: 671 EDDIRRHEAAARKSHAE------SPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANK 510 + +++ +E A +K +A+ N +YG A RK +S + +K Sbjct: 139 QKEVKVYEDAYQKEYAQYLVEFKKWNEKYGQAAQKKQTKRKNSTSKSRRSSSKGKSSVSK 198 Query: 509 GGVSSPIADRRGSAPTTPGRSKMRPTGR 426 G S + RR + + GRS+ + R Sbjct: 199 GRTKSTSSKRRADSSASQGRSQSSSSNR 226
>ZN516_HUMAN (Q92618) Zinc finger protein 516| Length = 1163 Score = 29.6 bits (65), Expect = 9.1 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = -3 Query: 688 KGVPPGKTTSVGTRPLPGNRMPSRLTIDMVTKPTTTA-LRGKQAMRGHPSILGS 530 +G PP K G PLP PS+ ++ T T A RG A++ P + G+ Sbjct: 983 QGPPPAKGEG-GAPPLPPREPPSKAAQELRTLATCAAGSRGDAALQAQPGVAGA 1035
>RNF12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain-interacting RING finger| protein) (RING finger LIM domain-binding protein) (R-LIM) Length = 600 Score = 29.6 bits (65), Expect = 9.1 Identities = 23/73 (31%), Positives = 31/73 (42%) Frame = -2 Query: 647 AAARKSHAESPNHRYGDQANDDGAARKAGNERSPIHPRQQARLANKGGVSSPIADRRGSA 468 A+AR S AE + + A R+A RSP H R +AR P ++ A Sbjct: 183 ASARPSRAERNSTEAVTEVPTTRAQRRA-RSRSPEHRRTRARAERSMSPLQPTSEIPRRA 241 Query: 467 PTTPGRSKMRPTG 429 PT S+ P G Sbjct: 242 PTLEQSSENEPEG 254
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2158 Score = 29.6 bits (65), Expect = 9.1 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Frame = -2 Query: 557 ERSPIHPRQQARLANKGGVSSPIADRRGSAPTTPGRSKMRPTGRG----DETPERGSAVP 390 E SP+ P+ L +K G P PTTP KM P G G + P +G P Sbjct: 584 EASPVEPQ----LPSKEGPEPP---EEVPPPTTPPAPKMEPKGDGVGSTRQPPSQGLGYP 636 Query: 389 KF 384 K+ Sbjct: 637 KY 638
>SYG_SCHPO (Q10179) Putative glycyl-tRNA synthetase (EC 6.1.1.14)| (Glycine--tRNA ligase) (GlyRS) Length = 652 Score = 29.6 bits (65), Expect = 9.1 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = -2 Query: 395 VPKFGDWDEKDPSTGEGF--TDIFEKVREEKQSG 300 V KF DW KDP+TGE F + E+V E + G Sbjct: 86 VDKFADWMCKDPATGEIFRADHLVEEVLEARLKG 119
>MELPH_MOUSE (Q91V27) Melanophilin (Exophilin-3) (Leaden protein)| (Synaptotagmin-like protein 2a) (Slac2-a) (Slp homolog lacking C2 domains a) Length = 590 Score = 29.6 bits (65), Expect = 9.1 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Frame = -3 Query: 673 GKTTSVGTRPLPGNRMPSRLTIDMVTK-------PTTTALRGKQAMRGHPSILGSRQGLR 515 G T GT + G +PS+ D+ T P + K+ R P R Sbjct: 287 GTTAMPGTDDVRGKHLPSQYLADVDTSDEDSIQGPRAASQHSKRRARTVPETQILELNKR 346 Query: 514 TKVGFHLLLRIAGALLPPHLEGP 446 HLL+ + +LPP + P Sbjct: 347 MSAVEHLLVHLENTVLPPSAQEP 369
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 29.6 bits (65), Expect = 9.1 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%) Frame = -2 Query: 692 DERRATREDDIRRHEAAARKSHAESPNHRYGDQAND--DGAARKAG-NERSPIHPRQQAR 522 + R +R RR + + + SP R +D D +R A +RS R +++ Sbjct: 184 ETRDRSRSRSPRRRSRSRSPTRSRSPPARRRSPGSDRSDRKSRSASPKKRSDKRARSESK 243 Query: 521 LANKGGVSSPIADRRGSAPTTPGRSKMRPTGRGDETPERGSAVP 390 ++ G RR + + P RS R + +P GSA P Sbjct: 244 SRSRSG------GRRSRSNSPPNRSPSPKKRRDNSSPRSGSASP 281
>IF5_SCHPO (Q09689) Probable eukaryotic translation initiation factor 5| (eIF-5) Length = 395 Score = 29.6 bits (65), Expect = 9.1 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -2 Query: 428 RGDETPERGSAVPKFGDWDEKDPSTGEGFTDIFEKVREE 312 RGDE S +FG+W E D G +I++K++EE Sbjct: 224 RGDEEEAESSRYDQFGEWLE-DNYPGVSDVEIYKKMKEE 261 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,756,264 Number of Sequences: 219361 Number of extensions: 2490676 Number of successful extensions: 8629 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 7782 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8535 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
