Clone Name | rbasd18g01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK071684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B15, full insert sequence Length = 1256 Score = 440 bits (222), Expect = e-120 Identities = 529/631 (83%), Gaps = 3/631 (0%) Strand = Plus / Minus Query: 96 gcacttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgc 155 ||||||||||||||||||||||||||| |||||| ||| ||||| || |||||||||| Sbjct: 1041 gcacttacaatgatgaggggatgtgtt---tgagcaacacatatccagaaagcacggcgc 985 Query: 156 ggtcgcgctctttcgccttggtctggtactgcaccctctggccatcgacccacatctcgg 215 ||| ||| || || |||| || || || ||||||||||||| | || |||||| || | Sbjct: 984 ggttgcgttccttgacctttgtttgataaagcaccctctggccttggagccacatttcag 925 Query: 216 tgaccagcgtttcgccggggtagacgtgcagcaggaaccggccaaatatgttctgcacag 275 |||| | ||||| || || ||||| ||||| || || |||||||| ||| | | ||| | Sbjct: 924 tgactaaagtttctccaggatagacatgcagaagaaaacggccaaagatgcttttcactg 865 Query: 276 ccgctggatccccgttgcagaacgacttgatgaccgcacgggccgcgaaccccagggtgc 335 | | |||||| || |||||||| || |||||||| || ||| |||||| || |||| | Sbjct: 864 ctgttggatctccattgcagaaagatttgatgacagcgcggatcgcgaatccaagggaac 805 Query: 336 agaggccgtgcagtatcggacgggcgaaccctgcaacctgtgcaaccatagggtctgaat 395 ||| || |||||||| ||||| | ||||||||||||||| ||||||||||||||||||| Sbjct: 804 tgagaccatgcagtattggacgagtgaaccctgcaacctgcgcaaccatagggtctgaat 745 Query: 396 gcaagggattataatccccagataacctgtataagagtgcctgggattgttgtgtctggt 455 |||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 744 gcaaaggattatagtccccagataacctgtacaatagtgcctgggattgttgtgtctggt 685 Query: 456 cttcatacactgcagaaggtgcggaatttggaatagaaatgcgagaaatctggttggcag 515 ||||||| ||||||||||| || ||||||||||||||||||||||||| |||||| | | Sbjct: 684 cttcatatactgcagaaggcgctgaatttggaatagaaatgcgagaaacctggttagtgg 625 Query: 516 gataagtcgtatacgagtatggccgggaagagtcagaaaaacctccagcaccacgcaaga 575 ||||| | | ||| |||||||| || |||| |||||||| |||||||||||||||| | Sbjct: 624 gataactagcataggagtatggtcgtgaaggatcagaaaagcctccagcaccacgcaggt 565 Query: 576 aaatagtactcctgttcatacataacacttcaccagaatccttgaggctggtcgtagttt 635 | ||||||||||||||||||||||| |||||||||||||| |||| ||| ||||| | Sbjct: 564 agatagtactcctgttcatacataaaacttcaccagaatctttgacatgggttgtagtct 505 Query: 636 cgatctcgagaatagttgctttccctttgtcgtgcaaaccagctaccttaaccttgttta 695 | ||||| ||||||||||||||||||||||| ||||| ||||||| ||| |||||||| Sbjct: 504 caatctcaagaatagttgctttccctttgtcatgcaagccagctatcttggtcttgttta 445 Query: 696 caacactggcacatgaanggattggcttgta 726 ||||| |||||| ||| | ||||||||||| Sbjct: 444 caacattggcacgcgaatgaattggcttgta 414
>gb|AY104299.1| Zea mays PCO075569 mRNA sequence Length = 2139 Score = 369 bits (186), Expect = 9e-99 Identities = 470/564 (83%), Gaps = 3/564 (0%) Strand = Plus / Minus Query: 98 acttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgcgg 157 ||||||||||| ||||||||||| || ||||| ||| ||||| ||||| || || ||| Sbjct: 1955 acttacaatgacgaggggatgtgctg---gagcaacacatatccagagaggacagctcgg 1899 Query: 158 tcgcgctctttcgccttggtctggtactgcaccctctggccatcgacccacatctcggtg 217 | ||||| || ||||| || ||||| |||||| ||||||| || | ||||||||| ||| Sbjct: 1898 ttccgctccttggccttcgtttggtagtgcaccttctggccgtcaagccacatctcagtg 1839 Query: 218 accagcgtttcgccggggtagacgtgcagcaggaaccggccaaatatgttctgcacagcc 277 || |||||| ||||||||||||||||| ||||| ||||| || ||| ||| ||| || Sbjct: 1838 gacaacgtttccccggggtagacgtgcagaaggaaacggccgaagatgctcttcaccgca 1779 Query: 278 gctggatccccgttgcagaacgacttgatgaccgcacgggccgcgaaccccagggtgcag 337 | || || ||||||||||| || || ||||| || || || ||||| || ||||||||| Sbjct: 1778 gtcggttcgccgttgcagaaagattttatgacggcgcgagcagcgaatcctagggtgcag 1719 Query: 338 aggccgtgcagtatcggacgggcgaaccctgcaacctgtgcaaccatagggtctgaatgc 397 ||||||||||| || ||||||| |||||| |||| |||||||| |||||||||||| Sbjct: 1718 aggccgtgcaggattggacgggtgaacccagcaagctgtgcaatatctgggtctgaatgc 1659 Query: 398 aagggattataatccccagataacctgtataagagtgcctgggattgttgtgtctggtct 457 || ||||| ||||||||||||| ||||||||| | |||||||||||| | ||||||||| Sbjct: 1658 aaaggattgtaatccccagatagcctgtataacaatgcctgggattgctttgtctggtcg 1599 Query: 458 tcatacactgcagaaggtgcggaatttggaatagaaatgcgagaaatctggttggcagga 517 || | |||||||||||||| ||||||||||||||||||||||||| || || |||||| Sbjct: 1598 tcgcatactgcagaaggtgccgaatttggaatagaaatgcgagaaacttgattagcagga 1539 Query: 518 taagtcgtatacgagtatggccgggaagagtcagaaaaacctccagcaccacgcaagaaa 577 || || | ||| ||||||||||| |||||||| ||||| |||||||||||||||||| | Sbjct: 1538 taggtagcatatgagtatggccgtgaagagtctgaaaaccctccagcaccacgcaagtag 1479 Query: 578 atagtactcctgttcatacataacacttcaccagaatccttgaggctggtcgtagtttcg 637 ||||||||||||||||| ||||| | ||| || || || |||||||| || ||||||||| Sbjct: 1478 atagtactcctgttcatgcataaaatttcccctgactctttgaggcttgtggtagtttcg 1419 Query: 638 atctcgagaatagttgctttccct 661 | ||| |||||||||||||||||| Sbjct: 1418 agctcaagaatagttgctttccct 1395 Score = 81.8 bits (41), Expect = 3e-12 Identities = 55/60 (91%) Strand = Plus / Minus Query: 662 ttgtcgtgcaaaccagctaccttaaccttgtttacaacactggcacatgaanggattggc 721 |||||||||||||||||||| |||||| ||||||||||||||||| | ||| |||||||| Sbjct: 427 ttgtcgtgcaaaccagctactttaaccctgtttacaacactggcatacgaagggattggc 368
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 161 bits (81), Expect = 4e-36 Identities = 138/157 (87%) Strand = Plus / Plus Query: 433 tgcctgggattgttgtgtctggtcttcatacactgcagaaggtgcggaatttggaataga 492 |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 21238128 tgcctgggattgttgtgtctggtcttcatatactgcagaaggcgctgaatttggaataga 21238187 Query: 493 aatgcgagaaatctggttggcaggataagtcgtatacgagtatggccgggaagagtcaga 552 ||||||||||| |||||| | |||||| | | ||| |||||||| || |||| ||||| Sbjct: 21238188 aatgcgagaaacctggttagtgggataactagcataggagtatggtcgtgaaggatcaga 21238247 Query: 553 aaaacctccagcaccacgcaagaaaatagtactcctg 589 ||| |||||||||||||||| | | |||||||||||| Sbjct: 21238248 aaagcctccagcaccacgcaggtagatagtactcctg 21238284 Score = 113 bits (57), Expect = 8e-22 Identities = 72/77 (93%) Strand = Plus / Plus Query: 363 accctgcaacctgtgcaaccatagggtctgaatgcaagggattataatccccagataacc 422 ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 21237757 accctgcaacctgcgcaaccatagggtctgaatgcaaaggattatagtccccagataacc 21237816 Query: 423 tgtataagagtgcctgg 439 |||| || ||||||||| Sbjct: 21237817 tgtacaatagtgcctgg 21237833 Score = 71.9 bits (36), Expect = 3e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 586 cctgttcatacataacacttcaccagaatccttgaggctggtcgtagtttcgatctcgag 645 ||||||||||||||| |||||||||||||| |||| ||| ||||| || ||||| || Sbjct: 21238368 cctgttcatacataaaacttcaccagaatctttgacatgggttgtagtctcaatctcaag 21238427 Query: 646 aatagttgctttccct 661 |||||||||||||||| Sbjct: 21238428 aatagttgctttccct 21238443 Score = 65.9 bits (33), Expect = 2e-07 Identities = 56/63 (88%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 96 gcacttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgc 155 ||||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||| Sbjct: 21236823 gcacttacaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgc 21236879 Query: 156 ggt 158 ||| Sbjct: 21236880 ggt 21236882
>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0705E11 Length = 140729 Score = 161 bits (81), Expect = 4e-36 Identities = 138/157 (87%) Strand = Plus / Plus Query: 433 tgcctgggattgttgtgtctggtcttcatacactgcagaaggtgcggaatttggaataga 492 |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 108885 tgcctgggattgttgtgtctggtcttcatatactgcagaaggcgctgaatttggaataga 108944 Query: 493 aatgcgagaaatctggttggcaggataagtcgtatacgagtatggccgggaagagtcaga 552 ||||||||||| |||||| | |||||| | | ||| |||||||| || |||| ||||| Sbjct: 108945 aatgcgagaaacctggttagtgggataactagcataggagtatggtcgtgaaggatcaga 109004 Query: 553 aaaacctccagcaccacgcaagaaaatagtactcctg 589 ||| |||||||||||||||| | | |||||||||||| Sbjct: 109005 aaagcctccagcaccacgcaggtagatagtactcctg 109041 Score = 113 bits (57), Expect = 8e-22 Identities = 72/77 (93%) Strand = Plus / Plus Query: 363 accctgcaacctgtgcaaccatagggtctgaatgcaagggattataatccccagataacc 422 ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 108514 accctgcaacctgcgcaaccatagggtctgaatgcaaaggattatagtccccagataacc 108573 Query: 423 tgtataagagtgcctgg 439 |||| || ||||||||| Sbjct: 108574 tgtacaatagtgcctgg 108590 Score = 71.9 bits (36), Expect = 3e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 586 cctgttcatacataacacttcaccagaatccttgaggctggtcgtagtttcgatctcgag 645 ||||||||||||||| |||||||||||||| |||| ||| ||||| || ||||| || Sbjct: 109125 cctgttcatacataaaacttcaccagaatctttgacatgggttgtagtctcaatctcaag 109184 Query: 646 aatagttgctttccct 661 |||||||||||||||| Sbjct: 109185 aatagttgctttccct 109200 Score = 65.9 bits (33), Expect = 2e-07 Identities = 56/63 (88%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 96 gcacttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgc 155 ||||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||| Sbjct: 107580 gcacttacaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgc 107636 Query: 156 ggt 158 ||| Sbjct: 107637 ggt 107639
>ref|XM_450198.1| Oryza sativa (japonica cultivar-group), mRNA Length = 330 Score = 54.0 bits (27), Expect = 7e-04 Identities = 50/57 (87%), Gaps = 3/57 (5%) Strand = Plus / Minus Query: 102 acaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgcggt 158 ||||||||||||||||| |||||||||| ||| ||||| || ||||||||||||| Sbjct: 301 acaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgcggt 248
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 196 gccatcgacccacatctcggtgaccagcgtttcgccggg 234 |||||||||||||||||||||| |||||| |||||||| Sbjct: 297779 gccatcgacccacatctcggtgcgcagcgtatcgccggg 297741
>gb|AC022559.12| Homo sapiens chromosome 8, clone RP11-404E12, complete sequence Length = 151033 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 cgaaccccagggtgcagaggc 341 ||||||||||||||||||||| Sbjct: 140486 cgaaccccagggtgcagaggc 140466
>gb|AC090805.7| Homo sapiens chromosome 8, clone RP11-55A15, complete sequence Length = 97951 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 cgaaccccagggtgcagaggc 341 ||||||||||||||||||||| Sbjct: 70551 cgaaccccagggtgcagaggc 70531
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 42.1 bits (21), Expect = 2.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 202 gacccacatctcggtgaccagcgtttcgccggg 234 |||||||||||||||| |||||| |||||||| Sbjct: 295862 gacccacatctcggtgcgcagcgtatcgccggg 295830
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cgtgcagcaggaaccggcca 259 |||||||||||||||||||| Sbjct: 1551424 cgtgcagcaggaaccggcca 1551405
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 10.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 203 acccacatctcggtgaccagcgtttcgccggg 234 ||||||||||||||| |||||| |||||||| Sbjct: 930189 acccacatctcggtgcgcagcgtgtcgccggg 930158
>gb|AY294226.1| Uncultured bacterium cosmid gbiox603r, complete sequence Length = 40150 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gcacagccgctggatccccg 289 |||||||||||||||||||| Sbjct: 25027 gcacagccgctggatccccg 25008
>emb|AL590244.5| Human DNA sequence from clone RP11-28H17 on chromosome 6 Contains the 3' end of a novel gene, part of a novel gene, a novel gene, cytochrome P450 pseudogene and the 3' end of the RHAG gene for Rhesus blood group-associated glycoprotein (RH50A), complete sequence Length = 133579 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 tgatgaggggatgtgttgtttgag 129 ||||||||||||||| |||||||| Sbjct: 114491 tgatgaggggatgtgatgtttgag 114514
>emb|AL079338.16|HSJ841K13 Human DNA sequence from clone RP5-841K13 on chromosome 20 Contains part of the gene for a novel protein (LOC284776), complete sequence Length = 122466 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gaaccctgcaacctgtgcaa 380 |||||||||||||||||||| Sbjct: 103027 gaaccctgcaacctgtgcaa 103046
>emb|AL021331.1|HS366N23 Human DNA sequence from clone RP3-366N23 on chromosome 6q27 Contains the UNC93A gene for unc-93 homolog A (C. elegans), the gene for NYD-TSPG protein, a Mitotic Feedback Control Protein MADP2 Homolog LIKE pseudogene and the 3' end of the TCP10 gene for t-complex 10 (mouse), complete sequence Length = 98517 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 acggcacttacaatgatgagggga 116 |||||||||||||| ||||||||| Sbjct: 40880 acggcacttacaatcatgagggga 40903
>gb|AC078958.30| Homo sapiens X BAC RP11-609C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187547 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 ttcatacataacacttcacc 609 |||||||||||||||||||| Sbjct: 14708 ttcatacataacacttcacc 14689
>gb|AY129332.1| Mycobacteriophage Bxz2, complete genome Length = 50913 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 tgatgaccgcacgggccgcg 322 |||||||||||||||||||| Sbjct: 30630 tgatgaccgcacgggccgcg 30611
>gb|AC104685.2| Homo sapiens BAC clone RP11-58H15 from 4, complete sequence Length = 135766 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 aatccccagataacctgtat 427 |||||||||||||||||||| Sbjct: 134441 aatccccagataacctgtat 134460
>gb|AC099396.5| Homo sapiens BAC clone RP11-122I3 from 4, complete sequence Length = 18585 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 aatccccagataacctgtat 427 |||||||||||||||||||| Sbjct: 675 aatccccagataacctgtat 694
>gb|AC058785.8|AC058785 Arabidopsis thaliana chromosome 1 BAC F13N6 genomic sequence, complete sequence Length = 90698 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 caatagtacgtatgacacaa 93 |||||||||||||||||||| Sbjct: 18466 caatagtacgtatgacacaa 18485
>gb|AC006198.1|AC006198 Homo sapiens, clone hRPK.3_A_1, complete sequence Length = 163410 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gaaccctgcaacctgtgcaa 380 |||||||||||||||||||| Sbjct: 17624 gaaccctgcaacctgtgcaa 17605
>emb|BX255942.5| Zebrafish DNA sequence from clone DKEY-269K6 in linkage group 5, complete sequence Length = 203225 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 attgttgtgtctggtcttca 460 |||||||||||||||||||| Sbjct: 31648 attgttgtgtctggtcttca 31629
>emb|CT573090.2| RP43-052E01, complete sequence Length = 161118 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 ttcatacataacacttcacc 609 |||||||||||||||||||| Sbjct: 66769 ttcatacataacacttcacc 66788
>gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complete sequence Length = 173574 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 691 gtttacaacactggcacatg 710 |||||||||||||||||||| Sbjct: 69507 gtttacaacactggcacatg 69488
>gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 182517 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 691 gtttacaacactggcacatg 710 |||||||||||||||||||| Sbjct: 156147 gtttacaacactggcacatg 156128 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,446,949 Number of Sequences: 3902068 Number of extensions: 4446949 Number of successful extensions: 79659 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79548 Number of HSP's gapped (non-prelim): 100 length of query: 728 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 705 effective length of database: 17,143,297,704 effective search space: 12086024881320 effective search space used: 12086024881320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)