ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK071684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 440 e-120
2gb|AY104299.1| Zea mays PCO075569 mRNA sequence 369 9e-99
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 161 4e-36
4dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 161 4e-36
5ref|XM_450198.1| Oryza sativa (japonica cultivar-group), mRNA 54 7e-04
6emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete ... 54 7e-04
7gb|AC022559.12| Homo sapiens chromosome 8, clone RP11-404E12, co... 42 2.5
8gb|AC090805.7| Homo sapiens chromosome 8, clone RP11-55A15, comp... 42 2.5
9emb|BX640424.1| Bordetella parapertussis strain 12822, complete ... 42 2.5
10gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 10.0
11gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 10.0
12gb|AY294226.1| Uncultured bacterium cosmid gbiox603r, complete s... 40 10.0
13emb|AL590244.5| Human DNA sequence from clone RP11-28H17 on chro... 40 10.0
14emb|AL079338.16|HSJ841K13 Human DNA sequence from clone RP5-841K... 40 10.0
15emb|AL021331.1|HS366N23 Human DNA sequence from clone RP3-366N23... 40 10.0
16gb|AC078958.30| Homo sapiens X BAC RP11-609C15 (Roswell Park Can... 40 10.0
17gb|AY129332.1| Mycobacteriophage Bxz2, complete genome 40 10.0
18gb|AC104685.2| Homo sapiens BAC clone RP11-58H15 from 4, complet... 40 10.0
19gb|AC099396.5| Homo sapiens BAC clone RP11-122I3 from 4, complet... 40 10.0
20gb|AC058785.8|AC058785 Arabidopsis thaliana chromosome 1 BAC F13... 40 10.0
21gb|AC006198.1|AC006198 Homo sapiens, clone hRPK.3_A_1, complete ... 40 10.0
22emb|BX255942.5| Zebrafish DNA sequence from clone DKEY-269K6 in ... 40 10.0
23emb|CT573090.2| RP43-052E01, complete sequence 40 10.0
24gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complet... 40 10.0
25gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cance... 40 10.0

>dbj|AK071684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B15, full
            insert sequence
          Length = 1256

 Score =  440 bits (222), Expect = e-120
 Identities = 529/631 (83%), Gaps = 3/631 (0%)
 Strand = Plus / Minus

                                                                        
Query: 96   gcacttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgc 155
            |||||||||||||||||||||||||||   |||||| ||| ||||| || ||||||||||
Sbjct: 1041 gcacttacaatgatgaggggatgtgtt---tgagcaacacatatccagaaagcacggcgc 985

                                                                        
Query: 156  ggtcgcgctctttcgccttggtctggtactgcaccctctggccatcgacccacatctcgg 215
            ||| ||| || ||  |||| || || ||  ||||||||||||| | || |||||| || |
Sbjct: 984  ggttgcgttccttgacctttgtttgataaagcaccctctggccttggagccacatttcag 925

                                                                        
Query: 216  tgaccagcgtttcgccggggtagacgtgcagcaggaaccggccaaatatgttctgcacag 275
            |||| |  ||||| || || ||||| ||||| || || |||||||| ||| | | ||| |
Sbjct: 924  tgactaaagtttctccaggatagacatgcagaagaaaacggccaaagatgcttttcactg 865

                                                                        
Query: 276  ccgctggatccccgttgcagaacgacttgatgaccgcacgggccgcgaaccccagggtgc 335
            | | |||||| || |||||||| || |||||||| || |||  |||||| || ||||  |
Sbjct: 864  ctgttggatctccattgcagaaagatttgatgacagcgcggatcgcgaatccaagggaac 805

                                                                        
Query: 336  agaggccgtgcagtatcggacgggcgaaccctgcaacctgtgcaaccatagggtctgaat 395
             ||| || |||||||| ||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 804  tgagaccatgcagtattggacgagtgaaccctgcaacctgcgcaaccatagggtctgaat 745

                                                                        
Query: 396  gcaagggattataatccccagataacctgtataagagtgcctgggattgttgtgtctggt 455
            |||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 744  gcaaaggattatagtccccagataacctgtacaatagtgcctgggattgttgtgtctggt 685

                                                                        
Query: 456  cttcatacactgcagaaggtgcggaatttggaatagaaatgcgagaaatctggttggcag 515
            ||||||| ||||||||||| || ||||||||||||||||||||||||| |||||| |  |
Sbjct: 684  cttcatatactgcagaaggcgctgaatttggaatagaaatgcgagaaacctggttagtgg 625

                                                                        
Query: 516  gataagtcgtatacgagtatggccgggaagagtcagaaaaacctccagcaccacgcaaga 575
            ||||| | | ||| |||||||| || ||||  |||||||| |||||||||||||||| | 
Sbjct: 624  gataactagcataggagtatggtcgtgaaggatcagaaaagcctccagcaccacgcaggt 565

                                                                        
Query: 576  aaatagtactcctgttcatacataacacttcaccagaatccttgaggctggtcgtagttt 635
            | ||||||||||||||||||||||| |||||||||||||| ||||    ||| ||||| |
Sbjct: 564  agatagtactcctgttcatacataaaacttcaccagaatctttgacatgggttgtagtct 505

                                                                        
Query: 636  cgatctcgagaatagttgctttccctttgtcgtgcaaaccagctaccttaaccttgttta 695
            | ||||| ||||||||||||||||||||||| ||||| ||||||| |||   ||||||||
Sbjct: 504  caatctcaagaatagttgctttccctttgtcatgcaagccagctatcttggtcttgttta 445

                                           
Query: 696  caacactggcacatgaanggattggcttgta 726
            ||||| ||||||  ||| | |||||||||||
Sbjct: 444  caacattggcacgcgaatgaattggcttgta 414



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>gb|AY104299.1| Zea mays PCO075569 mRNA sequence
          Length = 2139

 Score =  369 bits (186), Expect = 9e-99
 Identities = 470/564 (83%), Gaps = 3/564 (0%)
 Strand = Plus / Minus

                                                                        
Query: 98   acttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgcgg 157
            ||||||||||| ||||||||||| ||   ||||| ||| ||||| ||||| || || |||
Sbjct: 1955 acttacaatgacgaggggatgtgctg---gagcaacacatatccagagaggacagctcgg 1899

                                                                        
Query: 158  tcgcgctctttcgccttggtctggtactgcaccctctggccatcgacccacatctcggtg 217
            |  ||||| || ||||| || ||||| |||||| ||||||| || | ||||||||| |||
Sbjct: 1898 ttccgctccttggccttcgtttggtagtgcaccttctggccgtcaagccacatctcagtg 1839

                                                                        
Query: 218  accagcgtttcgccggggtagacgtgcagcaggaaccggccaaatatgttctgcacagcc 277
              || |||||| ||||||||||||||||| ||||| ||||| || ||| ||| ||| || 
Sbjct: 1838 gacaacgtttccccggggtagacgtgcagaaggaaacggccgaagatgctcttcaccgca 1779

                                                                        
Query: 278  gctggatccccgttgcagaacgacttgatgaccgcacgggccgcgaaccccagggtgcag 337
            |  || || ||||||||||| || || ||||| || || || ||||| || |||||||||
Sbjct: 1778 gtcggttcgccgttgcagaaagattttatgacggcgcgagcagcgaatcctagggtgcag 1719

                                                                        
Query: 338  aggccgtgcagtatcggacgggcgaaccctgcaacctgtgcaaccatagggtctgaatgc 397
            ||||||||||| || ||||||| |||||| |||| ||||||||     ||||||||||||
Sbjct: 1718 aggccgtgcaggattggacgggtgaacccagcaagctgtgcaatatctgggtctgaatgc 1659

                                                                        
Query: 398  aagggattataatccccagataacctgtataagagtgcctgggattgttgtgtctggtct 457
            || ||||| ||||||||||||| ||||||||| | |||||||||||| | ||||||||| 
Sbjct: 1658 aaaggattgtaatccccagatagcctgtataacaatgcctgggattgctttgtctggtcg 1599

                                                                        
Query: 458  tcatacactgcagaaggtgcggaatttggaatagaaatgcgagaaatctggttggcagga 517
            ||  | |||||||||||||| |||||||||||||||||||||||||  || || ||||||
Sbjct: 1598 tcgcatactgcagaaggtgccgaatttggaatagaaatgcgagaaacttgattagcagga 1539

                                                                        
Query: 518  taagtcgtatacgagtatggccgggaagagtcagaaaaacctccagcaccacgcaagaaa 577
            || || | ||| ||||||||||| |||||||| ||||| |||||||||||||||||| | 
Sbjct: 1538 taggtagcatatgagtatggccgtgaagagtctgaaaaccctccagcaccacgcaagtag 1479

                                                                        
Query: 578  atagtactcctgttcatacataacacttcaccagaatccttgaggctggtcgtagtttcg 637
            ||||||||||||||||| ||||| | ||| || || || |||||||| || |||||||||
Sbjct: 1478 atagtactcctgttcatgcataaaatttcccctgactctttgaggcttgtggtagtttcg 1419

                                    
Query: 638  atctcgagaatagttgctttccct 661
            | ||| ||||||||||||||||||
Sbjct: 1418 agctcaagaatagttgctttccct 1395



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                       
Query: 662 ttgtcgtgcaaaccagctaccttaaccttgtttacaacactggcacatgaanggattggc 721
           |||||||||||||||||||| |||||| ||||||||||||||||| | ||| ||||||||
Sbjct: 427 ttgtcgtgcaaaccagctactttaaccctgtttacaacactggcatacgaagggattggc 368



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  161 bits (81), Expect = 4e-36
 Identities = 138/157 (87%)
 Strand = Plus / Plus

                                                                            
Query: 433      tgcctgggattgttgtgtctggtcttcatacactgcagaaggtgcggaatttggaataga 492
                |||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 21238128 tgcctgggattgttgtgtctggtcttcatatactgcagaaggcgctgaatttggaataga 21238187

                                                                            
Query: 493      aatgcgagaaatctggttggcaggataagtcgtatacgagtatggccgggaagagtcaga 552
                ||||||||||| |||||| |  |||||| | | ||| |||||||| || ||||  |||||
Sbjct: 21238188 aatgcgagaaacctggttagtgggataactagcataggagtatggtcgtgaaggatcaga 21238247

                                                     
Query: 553      aaaacctccagcaccacgcaagaaaatagtactcctg 589
                ||| |||||||||||||||| | | ||||||||||||
Sbjct: 21238248 aaagcctccagcaccacgcaggtagatagtactcctg 21238284



 Score =  113 bits (57), Expect = 8e-22
 Identities = 72/77 (93%)
 Strand = Plus / Plus

                                                                            
Query: 363      accctgcaacctgtgcaaccatagggtctgaatgcaagggattataatccccagataacc 422
                ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 21237757 accctgcaacctgcgcaaccatagggtctgaatgcaaaggattatagtccccagataacc 21237816

                                 
Query: 423      tgtataagagtgcctgg 439
                |||| || |||||||||
Sbjct: 21237817 tgtacaatagtgcctgg 21237833



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                            
Query: 586      cctgttcatacataacacttcaccagaatccttgaggctggtcgtagtttcgatctcgag 645
                ||||||||||||||| |||||||||||||| ||||    ||| ||||| || ||||| ||
Sbjct: 21238368 cctgttcatacataaaacttcaccagaatctttgacatgggttgtagtctcaatctcaag 21238427

                                
Query: 646      aatagttgctttccct 661
                ||||||||||||||||
Sbjct: 21238428 aatagttgctttccct 21238443



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 56/63 (88%), Gaps = 3/63 (4%)
 Strand = Plus / Plus

                                                                            
Query: 96       gcacttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgc 155
                |||||||||||||||||||||||   |||||||||| ||| ||||| || ||||||||||
Sbjct: 21236823 gcacttacaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgc 21236879

                   
Query: 156      ggt 158
                |||
Sbjct: 21236880 ggt 21236882



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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone: P0705E11
          Length = 140729

 Score =  161 bits (81), Expect = 4e-36
 Identities = 138/157 (87%)
 Strand = Plus / Plus

                                                                          
Query: 433    tgcctgggattgttgtgtctggtcttcatacactgcagaaggtgcggaatttggaataga 492
              |||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 108885 tgcctgggattgttgtgtctggtcttcatatactgcagaaggcgctgaatttggaataga 108944

                                                                          
Query: 493    aatgcgagaaatctggttggcaggataagtcgtatacgagtatggccgggaagagtcaga 552
              ||||||||||| |||||| |  |||||| | | ||| |||||||| || ||||  |||||
Sbjct: 108945 aatgcgagaaacctggttagtgggataactagcataggagtatggtcgtgaaggatcaga 109004

                                                   
Query: 553    aaaacctccagcaccacgcaagaaaatagtactcctg 589
              ||| |||||||||||||||| | | ||||||||||||
Sbjct: 109005 aaagcctccagcaccacgcaggtagatagtactcctg 109041



 Score =  113 bits (57), Expect = 8e-22
 Identities = 72/77 (93%)
 Strand = Plus / Plus

                                                                          
Query: 363    accctgcaacctgtgcaaccatagggtctgaatgcaagggattataatccccagataacc 422
              ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 108514 accctgcaacctgcgcaaccatagggtctgaatgcaaaggattatagtccccagataacc 108573

                               
Query: 423    tgtataagagtgcctgg 439
              |||| || |||||||||
Sbjct: 108574 tgtacaatagtgcctgg 108590



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                          
Query: 586    cctgttcatacataacacttcaccagaatccttgaggctggtcgtagtttcgatctcgag 645
              ||||||||||||||| |||||||||||||| ||||    ||| ||||| || ||||| ||
Sbjct: 109125 cctgttcatacataaaacttcaccagaatctttgacatgggttgtagtctcaatctcaag 109184

                              
Query: 646    aatagttgctttccct 661
              ||||||||||||||||
Sbjct: 109185 aatagttgctttccct 109200



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 56/63 (88%), Gaps = 3/63 (4%)
 Strand = Plus / Plus

                                                                          
Query: 96     gcacttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgc 155
              |||||||||||||||||||||||   |||||||||| ||| ||||| || ||||||||||
Sbjct: 107580 gcacttacaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgc 107636

                 
Query: 156    ggt 158
              |||
Sbjct: 107637 ggt 107639



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>ref|XM_450198.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 330

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 50/57 (87%), Gaps = 3/57 (5%)
 Strand = Plus / Minus

                                                                    
Query: 102 acaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgcggt 158
           |||||||||||||||||   |||||||||| ||| ||||| || |||||||||||||
Sbjct: 301 acaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgcggt 248



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>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16
          Length = 347786

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                     
Query: 196    gccatcgacccacatctcggtgaccagcgtttcgccggg 234
              ||||||||||||||||||||||  |||||| ||||||||
Sbjct: 297779 gccatcgacccacatctcggtgcgcagcgtatcgccggg 297741



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>gb|AC022559.12| Homo sapiens chromosome 8, clone RP11-404E12, complete sequence
          Length = 151033

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 321    cgaaccccagggtgcagaggc 341
              |||||||||||||||||||||
Sbjct: 140486 cgaaccccagggtgcagaggc 140466



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>gb|AC090805.7| Homo sapiens chromosome 8, clone RP11-55A15, complete sequence
          Length = 97951

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 321   cgaaccccagggtgcagaggc 341
             |||||||||||||||||||||
Sbjct: 70551 cgaaccccagggtgcagaggc 70531



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>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 202    gacccacatctcggtgaccagcgtttcgccggg 234
              ||||||||||||||||  |||||| ||||||||
Sbjct: 295862 gacccacatctcggtgcgcagcgtatcgccggg 295830



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 240     cgtgcagcaggaaccggcca 259
               ||||||||||||||||||||
Sbjct: 1551424 cgtgcagcaggaaccggcca 1551405



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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 203    acccacatctcggtgaccagcgtttcgccggg 234
              |||||||||||||||  |||||| ||||||||
Sbjct: 930189 acccacatctcggtgcgcagcgtgtcgccggg 930158



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>gb|AY294226.1| Uncultured bacterium cosmid gbiox603r, complete sequence
          Length = 40150

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   gcacagccgctggatccccg 289
             ||||||||||||||||||||
Sbjct: 25027 gcacagccgctggatccccg 25008



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>emb|AL590244.5| Human DNA sequence from clone RP11-28H17 on chromosome 6 Contains  the 3'
              end of a novel gene, part of a novel gene,  a novel gene,
              cytochrome P450 pseudogene and the 3' end of the RHAG gene
              for Rhesus blood group-associated glycoprotein (RH50A),
              complete sequence
          Length = 133579

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 106    tgatgaggggatgtgttgtttgag 129
              ||||||||||||||| ||||||||
Sbjct: 114491 tgatgaggggatgtgatgtttgag 114514



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>emb|AL079338.16|HSJ841K13 Human DNA sequence from clone RP5-841K13 on chromosome 20 Contains part
              of the gene for a novel protein (LOC284776), complete
              sequence
          Length = 122466

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    gaaccctgcaacctgtgcaa 380
              ||||||||||||||||||||
Sbjct: 103027 gaaccctgcaacctgtgcaa 103046



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>emb|AL021331.1|HS366N23 Human DNA sequence from clone RP3-366N23 on chromosome 6q27 Contains
             the UNC93A gene for unc-93 homolog A (C. elegans), the
             gene for NYD-TSPG protein,  a Mitotic Feedback Control
             Protein MADP2 Homolog LIKE pseudogene and the 3' end  of
             the TCP10 gene for t-complex 10 (mouse), complete sequence
          Length = 98517

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 93    acggcacttacaatgatgagggga 116
             |||||||||||||| |||||||||
Sbjct: 40880 acggcacttacaatcatgagggga 40903



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>gb|AC078958.30| Homo sapiens X BAC RP11-609C15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 187547

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 590   ttcatacataacacttcacc 609
             ||||||||||||||||||||
Sbjct: 14708 ttcatacataacacttcacc 14689



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>gb|AY129332.1| Mycobacteriophage Bxz2, complete genome
          Length = 50913

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   tgatgaccgcacgggccgcg 322
             ||||||||||||||||||||
Sbjct: 30630 tgatgaccgcacgggccgcg 30611



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>gb|AC104685.2| Homo sapiens BAC clone RP11-58H15 from 4, complete sequence
          Length = 135766

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 408    aatccccagataacctgtat 427
              ||||||||||||||||||||
Sbjct: 134441 aatccccagataacctgtat 134460



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>gb|AC099396.5| Homo sapiens BAC clone RP11-122I3 from 4, complete sequence
          Length = 18585

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 aatccccagataacctgtat 427
           ||||||||||||||||||||
Sbjct: 675 aatccccagataacctgtat 694



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>gb|AC058785.8|AC058785 Arabidopsis thaliana chromosome 1 BAC F13N6 genomic sequence, complete
             sequence
          Length = 90698

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    caatagtacgtatgacacaa 93
             ||||||||||||||||||||
Sbjct: 18466 caatagtacgtatgacacaa 18485



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>gb|AC006198.1|AC006198 Homo sapiens, clone hRPK.3_A_1, complete sequence
          Length = 163410

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   gaaccctgcaacctgtgcaa 380
             ||||||||||||||||||||
Sbjct: 17624 gaaccctgcaacctgtgcaa 17605



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>emb|BX255942.5| Zebrafish DNA sequence from clone DKEY-269K6 in linkage group 5,
             complete sequence
          Length = 203225

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 441   attgttgtgtctggtcttca 460
             ||||||||||||||||||||
Sbjct: 31648 attgttgtgtctggtcttca 31629



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>emb|CT573090.2| RP43-052E01, complete sequence
          Length = 161118

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 590   ttcatacataacacttcacc 609
             ||||||||||||||||||||
Sbjct: 66769 ttcatacataacacttcacc 66788



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>gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complete sequence
          Length = 173574

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 691   gtttacaacactggcacatg 710
             ||||||||||||||||||||
Sbjct: 69507 gtttacaacactggcacatg 69488



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>gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 182517

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 691    gtttacaacactggcacatg 710
              ||||||||||||||||||||
Sbjct: 156147 gtttacaacactggcacatg 156128


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,446,949
Number of Sequences: 3902068
Number of extensions: 4446949
Number of successful extensions: 79659
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79548
Number of HSP's gapped (non-prelim): 100
length of query: 728
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 705
effective length of database: 17,143,297,704
effective search space: 12086024881320
effective search space used: 12086024881320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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