ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18f24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXTN3_ARATH (Q9FS16) Extensin-3 precursor (AtExt3) (AtExt5) 34 0.54
2ORK1_DROME (Q94526) Open rectifier potassium channel protein 1 (... 31 3.5
3YK13_CAEEL (P34337) Putative tyrosine-protein phosphatase C15H7.... 30 6.0
4AKT6_ARATH (Q8GXE6) Potassium channel AKT6 (Shaker pollen inward... 30 7.8

>EXTN3_ARATH (Q9FS16) Extensin-3 precursor (AtExt3) (AtExt5)|
          Length = 427

 Score = 33.9 bits (76), Expect = 0.54
 Identities = 25/91 (27%), Positives = 34/91 (37%)
 Frame = +3

Query: 387 YSPRNPKTLISHKVPAESYKQHPPIPGRHRLWLRLGRYLIVFEPPTFVLD**KHPWQMLS 566
           +SP  PK    +K P    K + P P  H        Y+    PP         P +  S
Sbjct: 331 HSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPP---------PVKHYS 381

Query: 567 QLFVFHKSKNFTSDYEIRMPPTVPINHYSDP 659
              V+H        Y  + PP  P++HYS P
Sbjct: 382 PPPVYHSPPPPKEKYVYKSPPPPPVHHYSPP 412



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>ORK1_DROME (Q94526) Open rectifier potassium channel protein 1 (Two pore|
           domain potassium channel Ork1)
          Length = 1001

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 441 RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPASS 334
           R PP P+E + SL SGG  +  +  +  DG  P S+
Sbjct: 599 RGPPPPFESNGSLASGGGGLTNMGFQMEDGATPPSA 634



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>YK13_CAEEL (P34337) Putative tyrosine-protein phosphatase C15H7.3 (EC|
           3.1.3.48)
          Length = 398

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 40  KLATSKSANDRLMNRERRSKRPRRLGAELMASW*TRR 150
           K  TSKS NDR +  ER+SK+ +  G +   S  TR+
Sbjct: 11  KKKTSKSGNDRSIRSERKSKQKKPAGEKSQKSRRTRK 47



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>AKT6_ARATH (Q8GXE6) Potassium channel AKT6 (Shaker pollen inward rectifier|
           K(+) channel) (Potassium channel SPIK)
          Length = 888

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -1

Query: 546 VFINQERKLGARRRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKSLGSGGSMV 382
           V ++Q+RKL   R S   ++S  N AD G      R+P  P       G GGSM+
Sbjct: 773 VVVSQKRKLNNFRNSLFGIISAANSADDGGE--VPRSPAVP-------GGGGSMI 818


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,042,224
Number of Sequences: 219361
Number of extensions: 2015932
Number of successful extensions: 4935
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4933
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7706249192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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