>NUMM_HUMAN (O75380) NADH-ubiquinone oxidoreductase 13 kDa-A subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-13KD-A) (CI-13KD-A)
          Length = 124

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = -1

Query: 361 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPA-VCKYCGLRY 185
           ++ ++   ++LI E P  +VE R+ AC+G    ALGHP  YI LD E     C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 119

Query: 184 VQDHH 170
            Q HH
Sbjct: 120 RQHHH 124

>NUMM_MOUSE (P52503) NADH-ubiquinone oxidoreductase 13 kDa-A subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-13KD-A) (CI-13KD-A)
          Length = 116

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = -1

Query: 361 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPA-VCKYCGLRY 185
           ++ ++   ++LI + P  +VE RI AC+G    ALGHP  YI LD E     C YCGL++
Sbjct: 53  KEVNENFAIDLIAQQPVNEVEHRIIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 111

Query: 184 VQDHH 170
            Q HH
Sbjct: 112 KQHHH 116

>NUMM_RAT (P52504) NADH-ubiquinone oxidoreductase 13 kDa-A subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-13KD-A) (CI-13KD-A)
          Length = 116

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = -1

Query: 361 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPA-VCKYCGLRY 185
           ++ ++   ++LI + P  +V+ RI AC+G    ALGHP  YI LD E     C YCGL++
Sbjct: 53  KEVNENFAIDLIAQQPVNEVDRRIIACDGGGG-ALGHPKVYINLDKETKTGTCAYCGLQF 111

Query: 184 VQDHH 170
            Q HH
Sbjct: 112 KQQHH 116

>NUMM_BOVIN (P23934) NADH-ubiquinone oxidoreductase 13 kDa-A subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-13KD-A) (CI-13KD-A)
          Length = 124

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = -1

Query: 361 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPA-VCKYCGLRY 185
           ++ ++   ++LI E P  +V  R+ +C+G    ALGHP  YI LD E     C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSQVGSRVISCDGGGG-ALGHPRVYINLDKETKTGTCGYCGLQF 119

Query: 184 VQDHH 170
            Q HH
Sbjct: 120 RQQHH 124

>NUMM_MACFA (Q4R5X8) NADH-ubiquinone oxidoreductase 13 kDa-A subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-13KD-A) (CI-13KD-A)
          Length = 124

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = -1

Query: 361 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEA-PAVCKYCGLRY 185
           ++ ++   ++LI E P  +V+ R+ AC+G    ALGHP  YI LD E     C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVQTRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 119

Query: 184 VQDHH 170
            Q  H
Sbjct: 120 RQHPH 124

>NUMM_CAEEL (Q19724) Probable NADH-ubiquinone oxidoreductase 13 kDa-A subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-13KD-A) (CI-13KD-A)
          Length = 140

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
 Frame = -1

Query: 358 DTSKKS-----PMELINEVPPIKV-EGRIAACEGDKNPALGHPIEYICLDLEAPAVCKYC 197
           D SKKS      M LI++ PP    + R+  C+G  +PALGHP  YI LD      C YC
Sbjct: 60  DISKKSVNPNVAMHLIDQRPPEDCGDKRVVFCDGG-HPALGHPKVYINLDKPGVHACGYC 118

Query: 196 GLRYVQDH 173
           G R+   H
Sbjct: 119 GNRFYNSH 126

>LBSA_EMENI (Q5AUI1) Lactobacillus shifted protein|
          Length = 213

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 22/56 (39%), Positives = 32/56 (57%)
 Frame = -1

Query: 337 MELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPAVCKYCGLRYVQDHH 170
           +ELI++ P   V+ +I +C+G   P LGHP  +I  D      C YCGL +  +HH
Sbjct: 120 IELIHKQPVRWVKDKIVSCDGGGGP-LGHPRIFINTDKPEIVPCGYCGLPFAHEHH 174

>HSP23_ORYSA (Q84Q77) 17.4 kDa class I heat shock protein 3|
          Length = 161

 Score = 33.1 bits (74), Expect = 0.50
 Identities = 22/62 (35%), Positives = 26/62 (41%)
 Frame = +2

Query: 296 PFNLDRWHLIDQFHWRFLACVLHPFGGVASNDGRSADCLPRGEAPRRASVAGAG*GSKER 475
           PF+LD W   D F          PFG   S+ G      PRG +   A+ AGA    KE 
Sbjct: 12  PFSLDLWDPFDGF----------PFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKET 61

Query: 476 RE 481
            E
Sbjct: 62  PE 63

>HSP24_ORYSA (Q84Q72) 17.4 kDa class I heat shock protein 4|
          Length = 161

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = +2

Query: 296 PFNLDRWHLIDQFHWRFLACVLHPFGGVASNDGRSADCLPRGEAPRRASVAGAG*GSKER 475
           PF+LD W   D F          PFG  + + G      PRG +   A+ AGA    KE 
Sbjct: 12  PFSLDLWDPFDGF----------PFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKET 61

Query: 476 RE 481
            E
Sbjct: 62  PE 63

>CAC1B_RAT (Q02294) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2336

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 434  GAGLRHGEGSRRCGRRWKPHRQMDAGHKQEISNGTDQ 324
            G+GL HGEGS  C R  K  R      +Q  S+ +++
Sbjct: 2085 GSGLPHGEGSTGCRRERKQERGRSQERRQPSSSSSEK 2121

>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -2

Query: 495 QRGGCSRRSLEP*PAPATLARRGASPRGRQSALRPSLEATPPNGCRT 355
           QRG   +   +P P PAT     +SPR   S   P     P +  RT
Sbjct: 569 QRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASPGRT 615

>SC11A_MOUSE (Q9R053) Sodium channel protein type 11 alpha subunit (Sodium|
           channel protein type XI alpha subunit) (Voltage-gated
           sodium channel alpha subunit Nav1.9) (Sensory neuron
           sodium channel 2) (NaN)
          Length = 1765

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 281 TCSNSPFNLDRWHLIDQFH 337
           TCS SP +L RWH+ D +H
Sbjct: 727 TCSTSPESLRRWHMGDFYH 745

>IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS)|
          Length = 1321

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +1

Query: 148 KVSCLISDGGLEHSEGRSICTQQVPP---DQGRCTQLDGQGQGFYPL 279
           KV+   + G L+HS   S+     PP     G  +   G G G YPL
Sbjct: 412 KVTLAPAGGALQHSRSNSMPVAHSPPAATSPGSLSSSSGHGSGSYPL 458

>IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)|
          Length = 1338

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +1

Query: 148 KVSCLISDGGLEHSEGRSICTQQVPP---DQGRCTQLDGQGQGFYP 276
           KV+ L + G L+HS   S+     PP     G  +   G G G YP
Sbjct: 415 KVALLPAGGALQHSRSMSMPVAHSPPAATSPGSLSSSSGHGSGSYP 460

>MTMRD_HUMAN (Q86WG5) Myotubularin-related protein 13 (SET-binding factor 2)|
          Length = 1849

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 14/58 (24%), Positives = 33/58 (56%)
 Frame = -3

Query: 203 ILRPSLCSRPPSLIRQDTLIYHSRIWSCCMLVGFTMYANVLCIALDGKMLSMTVILLP 30
           +++P+    P SL+    L Y+  I+  C+ + +T+Y + L ++L+  + ++   L+P
Sbjct: 109 LIQPAEVFAPKSLVLVSRL-YYPEIFRACLGLIYTVYVDSLNVSLESLIANLCACLVP 165

>CHO2_SCHPO (O74787) Phosphatidylethanolamine N-methyltransferase (EC 2.1.1.17)|
           (PEAMT)
          Length = 905

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 266 VFIPFTCSNSPFNLDRWHLIDQFHWRFLACVLHPF 370
           +FI    SNS ++   W +   F WRFL  ++H F
Sbjct: 393 IFIILLSSNSHYS-QFWAIFQAFVWRFLHSIIHAF 426

>FLGH_DESPS (Q6AJR8) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 231

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +1

Query: 331 VPLEISCLCPASIWRCGFQRRPQRRLPSPWR-----SPAPRQRG 447
           +PL +SCL   ++  C  +R P   +P P       SPA RQ G
Sbjct: 6   IPLYLSCLFLLALSGCNSKRPPLVEIPEPLEELQTMSPATRQAG 49

>NASA_BACSU (P42432) Nitrate transporter|
          Length = 421

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -3

Query: 422 RHGEGSRRCGRR 387
           RHG+G+RRCGRR
Sbjct: 332 RHGDGNRRCGRR 343

>CAC1B_MOUSE (O55017) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2327

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 434  GAGLRHGEGSRRCGRRWKPHRQMDAGHKQEISNGTDQ 324
            G GL HGEGS  C R  K  R      +Q  S+ +++
Sbjct: 2076 GPGLPHGEGSTACRRDRKQERGRSQERRQPSSSSSEK 2112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,483,554
Number of Sequences: 219361
Number of extensions: 1789730
Number of successful extensions: 5240
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5234
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)