ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18f13 |
|---|---|
| Clone Library Name | barley_pub |
>UBE4A_HUMAN (Q14139) Ubiquitin conjugation factor E4 A| Length = 1066 Score = 120 bits (301), Expect = 3e-27 Identities = 64/137 (46%), Positives = 80/137 (58%) Frame = -3 Query: 620 FPAAISKDGRSYSEQLFASASNILWKIGVDPQIIQEFMQLXXXXXXXXXXXXXXXAILGD 441 F A + KDGRSYS LFA +L KI +I F L D Sbjct: 928 FCATVPKDGRSYSPTLFAQTVRVLKKINKPGNMIMAFSNLAERIKSLADLQQQEEETYAD 987 Query: 440 IPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTDL 261 DEFLDPI TLM DPV+LPSSRVT+DR I RHLLSD TDPFNRS LT D + P+T+L Sbjct: 988 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTEL 1047 Query: 260 KLRIEEFVRSQQSRKRR 210 K +I+ ++ ++ +K + Sbjct: 1048 KEKIQRWLAERKQQKEQ 1064
>UBE4A_PONPY (Q5R9G3) Ubiquitin conjugation factor E4 A| Length = 1066 Score = 119 bits (299), Expect = 5e-27 Identities = 64/137 (46%), Positives = 80/137 (58%) Frame = -3 Query: 620 FPAAISKDGRSYSEQLFASASNILWKIGVDPQIIQEFMQLXXXXXXXXXXXXXXXAILGD 441 F A + KDGRSYS LFA +L KI +I F L D Sbjct: 928 FCATVPKDGRSYSPTLFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYAD 987 Query: 440 IPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTDL 261 DEFLDPI TLM DPV+LPSSRVT+DR I RHLLSD TDPFNRS LT D + P+T+L Sbjct: 988 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTEL 1047 Query: 260 KLRIEEFVRSQQSRKRR 210 K +I+ ++ ++ +K + Sbjct: 1048 KEKIQRWLAERKQQKEQ 1064
>UBE4A_RAT (Q6P7A2) Ubiquitin conjugation factor E4 A| Length = 1066 Score = 118 bits (295), Expect = 2e-26 Identities = 63/137 (45%), Positives = 79/137 (57%) Frame = -3 Query: 620 FPAAISKDGRSYSEQLFASASNILWKIGVDPQIIQEFMQLXXXXXXXXXXXXXXXAILGD 441 F A + KDGRSYS LFA +L KI +I F L D Sbjct: 928 FCATVPKDGRSYSPTLFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYAD 987 Query: 440 IPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTDL 261 DEFLDPI TLM DPV+LPSSRVT+D I RHLLSD TDPFNRS LT D + P+T+L Sbjct: 988 ACDEFLDPIMSTLMSDPVVLPSSRVTVDGSTIARHLLSDQTDPFNRSPLTMDQIRPNTEL 1047 Query: 260 KLRIEEFVRSQQSRKRR 210 K +I+ ++ ++ +K + Sbjct: 1048 KEKIQRWLAERKQQKEQ 1064
>UFD2_SCHPO (Q9HE05) Ubiquitin conjugation factor E4 (Ubiquitin fusion| degradation protein 2) (UB fusion protein 2) Length = 1010 Score = 109 bits (272), Expect = 7e-24 Identities = 58/141 (41%), Positives = 87/141 (61%), Gaps = 4/141 (2%) Frame = -3 Query: 620 FPAAISKDGRSYSEQLFASASNILWKIGV----DPQIIQEFMQLXXXXXXXXXXXXXXXA 453 F A++ DGRSYS+++F A++I+ K + D + I+EF+ Sbjct: 870 FVEAVAHDGRSYSKEIFERATSIMTKHNLKSSFDIEAIKEFVNRVEAFRLQEATEEED-- 927 Query: 452 ILGDIPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIP 273 +GDIPD FLDP+ +T+MKDPV+LP S ++IDR I HLLSD TDPFNR+ LT D + P Sbjct: 928 -MGDIPDYFLDPLMFTIMKDPVVLPRSGISIDRSTIKAHLLSDATDPFNRTPLTLDDVTP 986 Query: 272 DTDLKLRIEEFVRSQQSRKRR 210 + L+ I F++S++++ R Sbjct: 987 NDTLREEINTFLKSKRNKHSR 1007
>UFD2_YEAST (P54860) Ubiquitin conjugation factor E4 (Ubiquitin fusion| degradation protein 2) (UB fusion protein 2) Length = 961 Score = 103 bits (257), Expect = 4e-22 Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 2/138 (1%) Frame = -3 Query: 620 FPAAISKDGRSYSEQLFASASNILW-KIGV-DPQIIQEFMQLXXXXXXXXXXXXXXXAIL 447 F +A++KD RS++ LF A +IL K G+ P+ I++ + Sbjct: 819 FISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEY 878 Query: 446 GDIPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDT 267 GD+PDEFLDP+ YT+MKDPVILP+S++ IDR I HLLSD TDPFNR L + + P+ Sbjct: 879 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNE 938 Query: 266 DLKLRIEEFVRSQQSRKR 213 +L+ +I F + ++ + Sbjct: 939 ELRQKILCFKKQKKEEAK 956
>UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Ufd2a) Length = 1173 Score = 97.1 bits (240), Expect = 4e-20 Identities = 57/134 (42%), Positives = 77/134 (57%), Gaps = 1/134 (0%) Frame = -3 Query: 620 FPAAISKDGRSYSEQLFASASNILWKIGVDPQI-IQEFMQLXXXXXXXXXXXXXXXAILG 444 F AI+ D RSYS++LF + + K G+ I I++F L Sbjct: 1038 FAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYS 1097 Query: 443 DIPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTD 264 D PDEF DP+ TLM DPV LPS V +DR +I+RHLL+ TDPFNR LT+ ML P + Sbjct: 1098 DAPDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTESMLEPVPE 1156 Query: 263 LKLRIEEFVRSQQS 222 LK +I+ ++R +QS Sbjct: 1157 LKEQIQAWMREKQS 1170
>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Homozygously deleted in neuroblastoma 1) Length = 1302 Score = 95.1 bits (235), Expect = 1e-19 Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 1/134 (0%) Frame = -3 Query: 620 FPAAISKDGRSYSEQLFASASNILWKIGVDPQI-IQEFMQLXXXXXXXXXXXXXXXAILG 444 F AI+ D RSYS++LF + + K G+ I I++F L Sbjct: 1167 FAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYS 1226 Query: 443 DIPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTD 264 D PDEF DP+ TLM DPV LPS + +DR +I+RHLL+ TDPFNR LT+ ML P + Sbjct: 1227 DAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTESMLEPVPE 1285 Query: 263 LKLRIEEFVRSQQS 222 LK +I+ ++R +Q+ Sbjct: 1286 LKEQIQAWMREKQN 1299
>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4| Length = 980 Score = 79.7 bits (195), Expect = 6e-15 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 1/137 (0%) Frame = -3 Query: 620 FPAAISKDGRSYSEQLFASASNILWKIG-VDPQIIQEFMQLXXXXXXXXXXXXXXXAILG 444 F I+ D R+YS + F +A + K V ++ F L Sbjct: 845 FVKYIAYDERTYSPEFFHNAIECMRKNSIVGFSQLESFEHLAEDVKKEYEAKAELEEEYD 904 Query: 443 DIPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLIPDTD 264 D+P+EF DPI +M DPV LPS V +DR VI RHLLS +PFNR+ L+ + L PD++ Sbjct: 905 DVPEEFKDPIMDAIMVDPVKLPSGHV-MDRAVIERHLLSTPNNPFNRAPLSHNELSPDSE 963 Query: 263 LKLRIEEFVRSQQSRKR 213 LK +I+E++ +++ K+ Sbjct: 964 LKAKIQEWICQKRNSKK 980
>STUB1_CHICK (Q5ZHY5) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) Length = 314 Score = 53.5 bits (127), Expect = 5e-07 Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Frame = -3 Query: 443 DIPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGT-DPFNRSQLTQDMLIPDT 267 DIPD I + LM++P I PS +T DR I HL G DP RS LTQD LIP+ Sbjct: 237 DIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 295 Query: 266 DLKLRIEEFV 237 +K I+ F+ Sbjct: 296 AMKEVIDAFI 305
>STUB1_MOUSE (Q9WUD1) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) (Carboxy terminus of Hsp70-interacting protein) (E3 ubiquitin protein ligase CHIP) Length = 304 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Frame = -3 Query: 443 DIPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGT-DPFNRSQLTQDMLIPDT 267 DIPD I + LM++P I PS +T DR I HL G DP RS LTQ+ LIP+ Sbjct: 227 DIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNL 285 Query: 266 DLKLRIEEFV 237 +K I+ F+ Sbjct: 286 AMKEVIDAFI 295
>STUB1_HUMAN (Q9UNE7) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) (Carboxy terminus of Hsp70-interacting protein) (E3 ubiquitin protein ligase CHIP) (CLL-associated antigen KW-8) (Antigen NY-C Length = 303 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Frame = -3 Query: 443 DIPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGT-DPFNRSQLTQDMLIPDT 267 DIPD I + LM++P I PS +T DR I HL G DP RS LTQ+ LIP+ Sbjct: 226 DIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNL 284 Query: 266 DLKLRIEEFV 237 +K I+ F+ Sbjct: 285 AMKEVIDAFI 294
>RNF37_MOUSE (Q925F4) RING finger protein 37 (Ubiquitin-conjugating enzyme| 7-interacting protein 5) (UbcM4-interacting protein 5) (U-box domain-containing protein 5) Length = 539 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 7/76 (9%) Frame = -3 Query: 443 DIPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDG------TDPFNRSQLT-QD 285 D+P+EFLDPI +M P++LPS +V ID+ + + LS+ +DPF T Q Sbjct: 258 DVPEEFLDPITLEIMPCPMLLPSGKV-IDQSTLEKCNLSEAAWGRVPSDPFTGLAFTPQS 316 Query: 284 MLIPDTDLKLRIEEFV 237 +P LK RI+ F+ Sbjct: 317 QPLPHPSLKARIDRFL 332
>RNF37_HUMAN (O94941) RING finger protein 37 (Ubiquitin-conjugating enzyme| 7-interacting protein 5) (U-box domain-containing protein 5) Length = 541 Score = 46.2 bits (108), Expect = 8e-05 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 7/79 (8%) Frame = -3 Query: 452 ILGDIPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGT------DPFNRSQLT 291 I+ D+P+EFLDPI +M P++LPS +V ID+ + + S+ T DPF T Sbjct: 255 IIQDVPEEFLDPITLEIMPCPMLLPSGKV-IDQSTLEKCNRSEATWGRVPSDPFTGVAFT 313 Query: 290 -QDMLIPDTDLKLRIEEFV 237 +P LK RI+ F+ Sbjct: 314 PHSQPLPHPSLKARIDHFL 332
>PRP19_CAEEL (Q10051) PRP19/PSO4 homolog| Length = 492 Score = 38.1 bits (87), Expect = 0.021 Identities = 18/51 (35%), Positives = 30/51 (58%) Frame = -3 Query: 428 FLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLI 276 F+ I L +DPV+ S DR +IV+ + +GTDP + +L++D L+ Sbjct: 3 FVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLV 53
>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell| death-related protein SPL11) Length = 694 Score = 36.6 bits (83), Expect = 0.061 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = -3 Query: 440 IPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHLLS-DGTDPFNRSQLTQDMLIPDTD 264 IPDEF PI LMKDPVI+ S+ T +R I + + S T P + +++ L P+ Sbjct: 273 IPDEFRCPISLELMKDPVIV-STGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYV 331 Query: 263 LKLRIEEF 240 L+ I ++ Sbjct: 332 LRSLISQW 339
>PMYT1_CAEEL (O18209) Membrane-associated tyrosine- and threonine-specific| cdc2-inhibitory kinase (EC 2.7.11.1) (Myt1 kinase) (Lethal protein 37) Length = 677 Score = 32.3 bits (72), Expect = 1.2 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 8/51 (15%) Frame = -3 Query: 446 GDIPDEFLDPIQYTLMK--------DPVILPSSRVTIDRPVIVRHLLSDGT 318 G IPD F I L DP I P+SR +D PVI + L+ GT Sbjct: 314 GQIPDRFFAGISTDLRSLIALMLDSDPRIRPTSRDLLDHPVIKKKLMKRGT 364
>PRP19_RAT (Q9JMJ4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Neuronal| differentiation-related gene protein) Length = 504 Score = 32.3 bits (72), Expect = 1.2 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -3 Query: 392 PVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLI 276 P + P S +R +I +++ +GTDP N L+++ LI Sbjct: 15 PCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53
>PRP19_MOUSE (Q99KP6) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Nuclear| matrix protein 200) (Nuclear matrix protein SNEV) Length = 504 Score = 32.3 bits (72), Expect = 1.2 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -3 Query: 392 PVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLI 276 P + P S +R +I +++ +GTDP N L+++ LI Sbjct: 15 PCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53
>PRP19_HUMAN (Q9UMS4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Nuclear| matrix protein 200) (hPso4) Length = 504 Score = 32.3 bits (72), Expect = 1.2 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -3 Query: 392 PVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLI 276 P + P S +R +I +++ +GTDP N L+++ LI Sbjct: 15 PCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53
>PRP19_CHICK (Q5ZMA2) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog)| Length = 505 Score = 32.0 bits (71), Expect = 1.5 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -3 Query: 392 PVILPSSRVTIDRPVIVRHLLSDGTDPFNRSQLTQDMLI 276 P + P S +R +I +++ +GTDP N L+++ LI Sbjct: 15 PCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLI 53
>LOLD2_RHOBA (Q7UPK3) Lipoprotein-releasing system ATP-binding protein lolD 2| Length = 255 Score = 31.6 bits (70), Expect = 2.0 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Frame = +3 Query: 153 SSLHHISSTIRLP--------GLRVDSPPLPRLLGPDKFFNAQLEICIRYQHVLSELGAV 308 S+L H+ +T+ P G R+D+ R D++ N+Q+ I ++ H+L EL A+ Sbjct: 52 STLMHLLATLDQPDSGEVWFDGTRIDNQSRARR---DQYRNSQIGIIFQFYHLLPELSAI 108 Query: 309 EWISA 323 E + A Sbjct: 109 ENVLA 113
>APPA_BACSU (P42061) Oligopeptide-binding protein appA precursor| Length = 543 Score = 30.4 bits (67), Expect = 4.4 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 12/72 (16%) Frame = +3 Query: 261 EICIRYQHVLSELGA------VEWISAITEQMPNNNWSIYCDPRRW*Y------HRIFHQ 404 +I + Q L ++G VEW SA+ EQM NW W + IFH Sbjct: 398 DIAVVVQEQLKKIGIEVKTQIVEW-SALVEQMNPPNWDFDAMVMGWSLSTFPDQYDIFHS 456 Query: 405 SILNRIKKFVWY 440 S + + +VWY Sbjct: 457 SQIKKGLNYVWY 468
>YR034_MIMIV (Q5UPB0) Hypothetical protein R34| Length = 409 Score = 29.6 bits (65), Expect = 7.5 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%) Frame = +3 Query: 249 NAQLEICIRYQHVLSELGAV---EWISAITEQMPNNNWSIYCDPRRW*YH---RIFHQSI 410 N ++ C R V+ L + I I + NN ++I C W Y+ +IF S Sbjct: 85 NVHMDKCKRSAFVIDYLDHITKNNTIKHIKYYLGNNYYNITC----WNYYLQSKIFRYSD 140 Query: 411 LNRIKKFVWYVPEDSLSIHGLSC 479 L+ I+ + Y+P D +S + + C Sbjct: 141 LSSIRSCLKYLPVDRISGYLVDC 163
>DPO3E_BUCBP (Q89AN3) DNA polymerase III epsilon subunit (EC 2.7.7.7)| Length = 245 Score = 29.6 bits (65), Expect = 7.5 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 12/79 (15%) Frame = +3 Query: 267 CIRYQHVLSELGAVEWISAITEQMPNNNWSIYCDPRR------W*YHRIFHQSILNRIK- 425 C H + E+GAVE I+ + NN+ Y P R + H I +L++ K Sbjct: 22 CFYKNHKIIEIGAVEMINNV---FTGNNFHSYIQPNRLIDKQSFKIHGITDNFLLDKPKF 78 Query: 426 -----KFVWYVPEDSLSIH 467 KF+ Y+ L IH Sbjct: 79 HEISVKFLEYITNSDLIIH 97
>HLDE_PSEPK (Q88D93) Bifunctional protein hldE [Includes: D-beta-D-heptose| 7-phosphate kinase (EC 2.7.1.-) (D-beta-D-heptose 7-phosphotransferase); D-beta-D-heptose 1-phosphate adenosyltransferase (EC 2.7.7.-)] Length = 473 Score = 29.3 bits (64), Expect = 9.8 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +3 Query: 204 DSPPLPRLLGPDKFFNAQLEICIRYQHVLSELGAVEWISAITEQMPNN 347 D + RL GP + N+ R VL+ LGAV+W+ + E P N Sbjct: 375 DDASVSRLKGPGRPINS----VDRRMAVLAGLGAVDWVISFPEGTPEN 418
>HLDE_PSESM (Q87VF4) Bifunctional protein hldE [Includes: D-beta-D-heptose| 7-phosphate kinase (EC 2.7.1.-) (D-beta-D-heptose 7-phosphotransferase); D-beta-D-heptose 1-phosphate adenosyltransferase (EC 2.7.7.-)] Length = 474 Score = 29.3 bits (64), Expect = 9.8 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +3 Query: 204 DSPPLPRLLGPDKFFNAQLEICIRYQHVLSELGAVEWISAITEQMPNN 347 D + RL GP + N+ R VL+ LGAV+W+ + E P N Sbjct: 375 DDASVSRLKGPGRPINS----VDRRMAVLAGLGAVDWVISFPEGTPEN 418
>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box| domain protein 14) Length = 632 Score = 29.3 bits (64), Expect = 9.8 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = -3 Query: 440 IPDEFLDPIQYTLMKDPVILPSSRVTIDRPVIVRHL-LSDGTDPFNRSQLTQDMLIPDTD 264 IP+ F PI LMKDPVI+ S+ T +R I + L T P ++ L L P+ Sbjct: 248 IPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 306 Query: 263 LK 258 LK Sbjct: 307 LK 308 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,842,666 Number of Sequences: 219361 Number of extensions: 1701898 Number of successful extensions: 4526 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4416 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4518 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
