ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483526.1| Oryza sativa (japonica cultivar-group), mRNA 125 1e-25
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
3dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
4dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
5dbj|AK121683.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
6gb|AY111264.1| Zea mays CL5926_1 mRNA sequence 100 8e-18
7gb|AF150084.1|AF150084 Malus domestica small zinc finger-like pr... 62 2e-06
8ref|NM_124459.2| Arabidopsis thaliana TIM8; protein translocase ... 54 4e-04
9emb|BX833846.1|CNS0A0HF Arabidopsis thaliana Full-length cDNA Co... 54 4e-04
10gb|BT004405.1| Arabidopsis thaliana clone U20415 putative small ... 54 4e-04
11gb|AY087301.1| Arabidopsis thaliana clone 33833 mRNA, complete s... 54 4e-04
12gb|BT002881.1| Arabidopsis thaliana clone RAFL14-80-H13 (R20415)... 54 4e-04
13dbj|AB025617.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 54 4e-04
14gb|AF150083.1|AF150083 Arabidopsis thaliana small zinc finger-li... 54 4e-04
15gb|AC146747.7| Medicago truncatula clone mth2-14h5, complete seq... 52 0.002
16gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.10
17dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
19dbj|AK120379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
20gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.10
21gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.10
22emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003... 46 0.10
23dbj|AP006392.1| Lotus japonicus genomic DNA, chromosome 4, clone... 46 0.10
24gb|BC078465.1| Xenopus laevis MGC85218 protein, mRNA (cDNA clone... 44 0.40
25ref|NM_001017099.2| Xenopus tropicalis translocase of inner mito... 44 0.40
26emb|CR761299.2| Xenopus tropicalis finished cDNA, clone TEgg013c16 44 0.40
27ref|XM_450653.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
28gb|AC104856.19| Mus musculus chromosome 5, clone RP23-53G23, com... 42 1.6
29gb|AC127296.4| Mus musculus BAC clone RP23-395A17 from chromosom... 42 1.6
30gb|AC143329.3| Mus musculus BAC clone RP23-347I6 from chromosome... 42 1.6
31dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
32gb|AC133477.2| Homo sapiens 3 BAC RP11-364M20 (Roswell Park Canc... 42 1.6
33dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
34gb|AF150085.1|AF150085 Brassica rapa small zinc finger-like prot... 42 1.6
35gb|AC124427.5| Mus musculus BAC clone RP24-232N5 from chromosome... 40 6.3
36gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromoso... 40 6.3
37gb|AC183385.3| Pan troglodytes BAC clone CH251-277F20 from chrom... 40 6.3
38gb|AC140316.3| Mus musculus BAC clone RP23-419L10 from chromosom... 40 6.3
39ref|XM_723354.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 6.3
40ref|XM_734594.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 6.3
41emb|CR626881.4| Zebrafish DNA sequence from clone CH211-77G19 in... 40 6.3
42emb|AL139423.25| Human DNA sequence from clone RP4-734G22 on chr... 40 6.3
43emb|AL593853.11| Mouse DNA sequence from clone RP23-199A2 on chr... 40 6.3
44ref|NM_080081.2| Drosophila melanogaster net CG11450-RA (net), mRNA 40 6.3
45gb|BT022752.1| Drosophila melanogaster IP14710 full insert cDNA 40 6.3
46gb|BT022740.1| Drosophila melanogaster IP14510 full insert cDNA 40 6.3
47gb|AC008318.7|AC008318 Drosophila melanogaster, chromosome 2L, r... 40 6.3
48gb|AF303350.1|AF303350 Drosophila melanogaster DNA-binding trans... 40 6.3
49gb|AC073289.12| Homo sapiens 3 BAC RP11-478O19 (Roswell Park Can... 40 6.3
50emb|AL929338.9| Zebrafish DNA sequence from clone CH211-139G18 i... 40 6.3
51gb|AE003590.3| Drosophila melanogaster chromosome 2L, section 1 ... 40 6.3
52gb|DQ068020.1| Catathelasma imperiale RNA polymerase II largest ... 40 6.3
53gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 6.3
54emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on ch... 40 6.3 
>ref|XM_483526.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 222

 Score =  125 bits (63), Expect = 1e-25
 Identities = 117/135 (86%)
 Strand = Plus / Minus

                                                                       
Query: 176 ctactgcatctgaaacctcttcgcaattatcatactcatgtccagatacctctgagcgca 235
           ||||||||||| |||||  || || || ||||  |||||||| ||  |||||||||||||
Sbjct: 222 ctactgcatctcaaaccgtttggcgatgatcacgctcatgtcaaggaacctctgagcgca 163

                                                                       
Query: 236 attggtcaggcaggtagtttcaccggagctgaacttgcttcctggggtgccggtgatgca 295
            ||||||||||| || ||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct: 162 gttggtcaggcaagtcgtttccccggagctgaacttgcttcctggagtgctggtgatgca 103

                          
Query: 296 tttgtcccagcacac 310
            ||||||||||||||
Sbjct: 102 cttgtcccagcacac 88
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  125 bits (63), Expect = 1e-25
 Identities = 117/135 (86%)
 Strand = Plus / Plus

                                                                            
Query: 176      ctactgcatctgaaacctcttcgcaattatcatactcatgtccagatacctctgagcgca 235
                ||||||||||| |||||  || || || ||||  |||||||| ||  |||||||||||||
Sbjct: 26742694 ctactgcatctcaaaccgtttggcgatgatcacgctcatgtcaaggaacctctgagcgca 26742753

                                                                            
Query: 236      attggtcaggcaggtagtttcaccggagctgaacttgcttcctggggtgccggtgatgca 295
                 ||||||||||| || ||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct: 26742754 gttggtcaggcaagtcgtttccccggagctgaacttgcttcctggagtgctggtgatgca 26742813

                               
Query: 296      tttgtcccagcacac 310
                 ||||||||||||||
Sbjct: 26742814 cttgtcccagcacac 26742828
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>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0033D24
          Length = 186132

 Score =  125 bits (63), Expect = 1e-25
 Identities = 117/135 (86%)
 Strand = Plus / Plus

                                                                         
Query: 176   ctactgcatctgaaacctcttcgcaattatcatactcatgtccagatacctctgagcgca 235
             ||||||||||| |||||  || || || ||||  |||||||| ||  |||||||||||||
Sbjct: 86036 ctactgcatctcaaaccgtttggcgatgatcacgctcatgtcaaggaacctctgagcgca 86095

                                                                         
Query: 236   attggtcaggcaggtagtttcaccggagctgaacttgcttcctggggtgccggtgatgca 295
              ||||||||||| || ||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct: 86096 gttggtcaggcaagtcgtttccccggagctgaacttgcttcctggagtgctggtgatgca 86155

                            
Query: 296   tttgtcccagcacac 310
              ||||||||||||||
Sbjct: 86156 cttgtcccagcacac 86170
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>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0665C04
          Length = 177054

 Score =  125 bits (63), Expect = 1e-25
 Identities = 117/135 (86%)
 Strand = Plus / Plus

                                                                        
Query: 176  ctactgcatctgaaacctcttcgcaattatcatactcatgtccagatacctctgagcgca 235
            ||||||||||| |||||  || || || ||||  |||||||| ||  |||||||||||||
Sbjct: 5484 ctactgcatctcaaaccgtttggcgatgatcacgctcatgtcaaggaacctctgagcgca 5543

                                                                        
Query: 236  attggtcaggcaggtagtttcaccggagctgaacttgcttcctggggtgccggtgatgca 295
             ||||||||||| || ||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct: 5544 gttggtcaggcaagtcgtttccccggagctgaacttgcttcctggagtgctggtgatgca 5603

                           
Query: 296  tttgtcccagcacac 310
             ||||||||||||||
Sbjct: 5604 cttgtcccagcacac 5618
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>dbj|AK121683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070B21, full
           insert sequence
          Length = 458

 Score =  125 bits (63), Expect = 1e-25
 Identities = 117/135 (86%)
 Strand = Plus / Minus

                                                                       
Query: 176 ctactgcatctgaaacctcttcgcaattatcatactcatgtccagatacctctgagcgca 235
           ||||||||||| |||||  || || || ||||  |||||||| ||  |||||||||||||
Sbjct: 305 ctactgcatctcaaaccgtttggcgatgatcacgctcatgtcaaggaacctctgagcgca 246

                                                                       
Query: 236 attggtcaggcaggtagtttcaccggagctgaacttgcttcctggggtgccggtgatgca 295
            ||||||||||| || ||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct: 245 gttggtcaggcaagtcgtttccccggagctgaacttgcttcctggagtgctggtgatgca 186

                          
Query: 296 tttgtcccagcacac 310
            ||||||||||||||
Sbjct: 185 cttgtcccagcacac 171
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>gb|AY111264.1| Zea mays CL5926_1 mRNA sequence
          Length = 587

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                       
Query: 223 acctctgagcgcaattggtcaggcaggtagtttcaccggagctgaacttgcttcctgggg 282
           ||||||||||||| |||||||||||||| | ||| ||||||||||||||||| || || |
Sbjct: 298 acctctgagcgcagttggtcaggcaggttgattccccggagctgaacttgctcccgggag 239

                                     
Query: 283 tgccggtgatgcatttgtcccagcac 308
            || ||||||||||||||||||||||
Sbjct: 238 cgctggtgatgcatttgtcccagcac 213
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>gb|AF150084.1|AF150084 Malus domestica small zinc finger-like protein (TIM8) mRNA, partial
           cds
          Length = 279

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 264 ctgaacttgcttcctggggtgccggtgatgcatttgtcccagcacacattcgtcagctt 322
           ||||||||||| || ||||| || |||||||| |||||||| ||||||||||| |||||
Sbjct: 212 ctgaacttgctcccgggggtaccagtgatgcacttgtcccaacacacattcgtaagctt 154
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>ref|NM_124459.2| Arabidopsis thaliana TIM8; protein translocase AT5G50810 (TIM8)
           mRNA, complete cds
          Length = 560

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 261 gagctgaacttgcttcctggggtgccggtgatgcatttgtcccagcacaca 311
           ||||||||||| ||||| || | ||  ||||||||||||||||||||||||
Sbjct: 234 gagctgaacttacttcccggtgcgcttgtgatgcatttgtcccagcacaca 184
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>emb|BX833846.1|CNS0A0HF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL7ZC07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 489

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 261 gagctgaacttgcttcctggggtgccggtgatgcatttgtcccagcacaca 311
           ||||||||||| ||||| || | ||  ||||||||||||||||||||||||
Sbjct: 202 gagctgaacttacttcccggtgcgcttgtgatgcatttgtcccagcacaca 152
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>gb|BT004405.1| Arabidopsis thaliana clone U20415 putative small zinc finger
           protein (At5g50810) mRNA, complete cds
          Length = 265

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 261 gagctgaacttgcttcctggggtgccggtgatgcatttgtcccagcacaca 311
           ||||||||||| ||||| || | ||  ||||||||||||||||||||||||
Sbjct: 149 gagctgaacttacttcccggtgcgcttgtgatgcatttgtcccagcacaca 99
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>gb|AY087301.1| Arabidopsis thaliana clone 33833 mRNA, complete sequence
          Length = 489

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 261 gagctgaacttgcttcctggggtgccggtgatgcatttgtcccagcacaca 311
           ||||||||||| ||||| || | ||  ||||||||||||||||||||||||
Sbjct: 240 gagctgaacttacttcccggtgcgcttgtgatgcatttgtcccagcacaca 190
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>gb|BT002881.1| Arabidopsis thaliana clone RAFL14-80-H13 (R20415) putative small
           zinc finger protein (At5g50810) mRNA, complete cds
          Length = 576

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 261 gagctgaacttgcttcctggggtgccggtgatgcatttgtcccagcacaca 311
           ||||||||||| ||||| || | ||  ||||||||||||||||||||||||
Sbjct: 230 gagctgaacttacttcccggtgcgcttgtgatgcatttgtcccagcacaca 180
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>dbj|AB025617.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K7B16
          Length = 26721

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 261   gagctgaacttgcttcctggggtgccggtgatgcatttgtcccagcacaca 311
             ||||||||||| ||||| || | ||  ||||||||||||||||||||||||
Sbjct: 14020 gagctgaacttacttcccggtgcgcttgtgatgcatttgtcccagcacaca 14070
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>gb|AF150083.1|AF150083 Arabidopsis thaliana small zinc finger-like protein (TIM8) mRNA,
           complete cds
          Length = 518

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 261 gagctgaacttgcttcctggggtgccggtgatgcatttgtcccagcacaca 311
           ||||||||||| ||||| || | ||  ||||||||||||||||||||||||
Sbjct: 220 gagctgaacttacttcccggtgcgcttgtgatgcatttgtcccagcacaca 170
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>gb|AC146747.7| Medicago truncatula clone mth2-14h5, complete sequence
          Length = 129204

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 250   tagtttcaccggagctgaacttgcttcctggggtgccggtgatgcatttgtcccagca 307
             |||| |||||||| ||||||||  | || || ||||| ||||||||||||||||||||
Sbjct: 54333 tagtctcaccggaactgaacttattccccggcgtgcctgtgatgcatttgtcccagca 54390
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>gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0035B18, complete sequence
          Length = 123425

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 288   gtgatgcatttgtcccagcacacattcgtcagctt 322
             |||||||||||||||||||| ||||  ||||||||
Sbjct: 63156 gtgatgcatttgtcccagcaaacatcagtcagctt 63190
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 288     gtgatgcatttgtcccagcacacattcgtcagctt 322
               |||||||||||||||||||| ||||  ||||||||
Sbjct: 1354355 gtgatgcatttgtcccagcaaacatcagtcagctt 1354389
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 288     gtgatgcatttgtcccagcacacattcgtcagctt 322
               |||||||||||||||||||| ||||  ||||||||
Sbjct: 1444361 gtgatgcatttgtcccagcaaacatcagtcagctt 1444395
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>dbj|AK120379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072B16, full
           insert sequence
          Length = 492

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 288 gtgatgcatttgtcccagcacacattcgtcagctt 322
           |||||||||||||||||||| ||||  ||||||||
Sbjct: 198 gtgatgcatttgtcccagcaaacatcagtcagctt 164
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 288     gtgatgcatttgtcccagcacacattcgtcagctt 322
               |||||||||||||||||||| ||||  ||||||||
Sbjct: 1442082 gtgatgcatttgtcccagcaaacatcagtcagctt 1442116
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 288     gtgatgcatttgtcccagcacacattcgtcagctt 322
               |||||||||||||||||||| ||||  ||||||||
Sbjct: 1354355 gtgatgcatttgtcccagcaaacatcagtcagctt 1354389
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>emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 157453

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 288   gtgatgcatttgtcccagcacacattcgtcagctt 322
             |||||||||||||||||||| ||||  ||||||||
Sbjct: 74814 gtgatgcatttgtcccagcaaacatcagtcagctt 74780
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>dbj|AP006392.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39E03, TM0266,
             complete sequence
          Length = 113459

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 249   gtagtttcaccggagctgaacttgcttcctggggtgccggtgatgcatttgtcccagca 307
             |||| |||||| || |||| ||| || || || ||||| ||||||||||||||||||||
Sbjct: 15508 gtagcttcaccagaactgagcttactcccaggtgtgccagtgatgcatttgtcccagca 15566
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>gb|BC078465.1| Xenopus laevis MGC85218 protein, mRNA (cDNA clone MGC:85218
           IMAGE:6871849), complete cds
          Length = 738

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 291 atgcatttgtcccagcacacat 312
           ||||||||||||||||||||||
Sbjct: 182 atgcatttgtcccagcacacat 161
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>ref|NM_001017099.2| Xenopus tropicalis translocase of inner mitochondrial membrane 8
           homolog B (yeast) (timm8b), mRNA
          Length = 502

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 291 atgcatttgtcccagcacacat 312
           ||||||||||||||||||||||
Sbjct: 159 atgcatttgtcccagcacacat 138
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>emb|CR761299.2| Xenopus tropicalis finished cDNA, clone TEgg013c16
          Length = 502

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 291 atgcatttgtcccagcacacat 312
           ||||||||||||||||||||||
Sbjct: 159 atgcatttgtcccagcacacat 138
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>ref|XM_450653.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 678

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 337 tcatcatcatcctttgcttct 357
           |||||||||||||||||||||
Sbjct: 35  tcatcatcatcctttgcttct 55
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>gb|AC104856.19| Mus musculus chromosome 5, clone RP23-53G23, complete sequence
          Length = 169800

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    ttgttggcatgtgaaaaggaa 122
              |||||||||||||||||||||
Sbjct: 104340 ttgttggcatgtgaaaaggaa 104360
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>gb|AC127296.4| Mus musculus BAC clone RP23-395A17 from chromosome 7, complete sequence
          Length = 205162

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    ttgttggcatgtgaaaaggaa 122
              |||||||||||||||||||||
Sbjct: 159630 ttgttggcatgtgaaaaggaa 159610
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>gb|AC143329.3| Mus musculus BAC clone RP23-347I6 from chromosome 7, complete sequence
          Length = 201979

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   ttgttggcatgtgaaaaggaa 122
             |||||||||||||||||||||
Sbjct: 87399 ttgttggcatgtgaaaaggaa 87419
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 337      tcatcatcatcctttgcttct 357
                |||||||||||||||||||||
Sbjct: 12040125 tcatcatcatcctttgcttct 12040105
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>gb|AC133477.2| Homo sapiens 3 BAC RP11-364M20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 101061

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 77    atattttcactgttaaaactc 97
             |||||||||||||||||||||
Sbjct: 55910 atattttcactgttaaaactc 55930
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>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0441A12
          Length = 185437

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 337    tcatcatcatcctttgcttct 357
              |||||||||||||||||||||
Sbjct: 144605 tcatcatcatcctttgcttct 144585
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>gb|AF150085.1|AF150085 Brassica rapa small zinc finger-like protein (TIM8) mRNA, partial
           cds
          Length = 235

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 260 ggagctgaacttgcttcctgg 280
           |||||||||||||||||||||
Sbjct: 209 ggagctgaacttgcttcctgg 189
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>gb|AC124427.5| Mus musculus BAC clone RP24-232N5 from chromosome 8, complete sequence
          Length = 205525

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    acagatacaactactaacca 54
             ||||||||||||||||||||
Sbjct: 91688 acagatacaactactaacca 91707
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>gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromosome 7, complete
            sequence
          Length = 168126

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 335  actcatcatcatcctttgct 354
            ||||||||||||||||||||
Sbjct: 3916 actcatcatcatcctttgct 3935
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>gb|AC183385.3| Pan troglodytes BAC clone CH251-277F20 from chromosome 7, complete
              sequence
          Length = 148939

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    actcatcatcatcctttgct 354
              ||||||||||||||||||||
Sbjct: 131274 actcatcatcatcctttgct 131293
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>gb|AC140316.3| Mus musculus BAC clone RP23-419L10 from chromosome 18, complete sequence
          Length = 195911

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      cacaagaaagctaaccaagg 28
              ||||||||||||||||||||
Sbjct: 135960 cacaagaaagctaaccaagg 135979
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>ref|XM_723354.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00094)
           partial mRNA
          Length = 9000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 67  acaagattaaatattttcac 86
           ||||||||||||||||||||
Sbjct: 136 acaagattaaatattttcac 155
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>ref|XM_734594.1| Plasmodium chabaudi chabaudi hypothetical protein (PC001121.02.0)
           partial mRNA
          Length = 1029

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 67  acaagattaaatattttcac 86
           ||||||||||||||||||||
Sbjct: 136 acaagattaaatattttcac 155
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>emb|CR626881.4| Zebrafish DNA sequence from clone CH211-77G19 in linkage group 17,
            complete sequence
          Length = 25803

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 292  tgcatttgtcccagcacaca 311
            ||||||||||||||||||||
Sbjct: 8787 tgcatttgtcccagcacaca 8768
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>emb|AL139423.25| Human DNA sequence from clone RP4-734G22 on chromosome 1 Contains the
             3' end of the PEX14 gene for peroxisomal biogenesis factor
             14, the 3' end of the gene for a novel protein (FLJ34970,
             FLJ20321, FLJ12223) and two CpG islands, complete sequence
          Length = 143285

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 204   atcatactcatgtccagatacctctgag 231
             |||||||||||||||||||  |||||||
Sbjct: 10708 atcatactcatgtccagatcgctctgag 10735
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>emb|AL593853.11| Mouse DNA sequence from clone RP23-199A2 on chromosome 11 Contains the 5'
              end of a novel gene, the Sfrs1 gene for
              arginine/serine-rich splicing factor 1 (ASF/SF2), the Vezf1
              gene for vascular endothelial zinc finger 1, a novel gene
              (2210416O15Rik), the gene for the likely ortholog of H.
              sapiens CUE domain containing 1 CUEDC1 (C330016O16Rik), the
              Mrps23 gene for mitochondrial ribosomal protein S23 and two
              CpG islands, complete sequence
          Length = 223276

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 118    aggaagctcagagtttggaaagtt 141
              |||||||| |||||||||||||||
Sbjct: 145678 aggaagctgagagtttggaaagtt 145701
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>ref|NM_080081.2| Drosophila melanogaster net CG11450-RA (net), mRNA
          Length = 2185

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  agagtttggaaagtttttga 146
            ||||||||||||||||||||
Sbjct: 1212 agagtttggaaagtttttga 1193
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>gb|BT022752.1| Drosophila melanogaster IP14710 full insert cDNA
          Length = 1664

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  agagtttggaaagtttttga 146
            ||||||||||||||||||||
Sbjct: 1189 agagtttggaaagtttttga 1170
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>gb|BT022740.1| Drosophila melanogaster IP14510 full insert cDNA
          Length = 1572

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  agagtttggaaagtttttga 146
            ||||||||||||||||||||
Sbjct: 1187 agagtttggaaagtttttga 1168
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>gb|AC008318.7|AC008318 Drosophila melanogaster, chromosome 2L, region 21A-21A, BAC clone
             BACR09J20, complete sequence
          Length = 166626

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   agagtttggaaagtttttga 146
             ||||||||||||||||||||
Sbjct: 74071 agagtttggaaagtttttga 74090
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>gb|AF303350.1|AF303350 Drosophila melanogaster DNA-binding transcription factor NET (net)
            mRNA, complete cds
          Length = 2185

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  agagtttggaaagtttttga 146
            ||||||||||||||||||||
Sbjct: 1211 agagtttggaaagtttttga 1192
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>gb|AC073289.12| Homo sapiens 3 BAC RP11-478O19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 130251

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 434    taaaccccttctggtttttgcttg 457
              ||||||||||||||| ||||||||
Sbjct: 109121 taaaccccttctggtctttgcttg 109098
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>emb|AL929338.9| Zebrafish DNA sequence from clone CH211-139G18 in linkage group 17,
             complete sequence
          Length = 179399

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   tgcatttgtcccagcacaca 311
             ||||||||||||||||||||
Sbjct: 38163 tgcatttgtcccagcacaca 38144
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>gb|AE003590.3| Drosophila melanogaster chromosome 2L, section 1 of 83 of the complete
             sequence
          Length = 305900

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   agagtttggaaagtttttga 146
             ||||||||||||||||||||
Sbjct: 83429 agagtttggaaagtttttga 83448
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>gb|DQ068020.1| Catathelasma imperiale RNA polymerase II largest subunit (RPB1)
           gene, partial sequence
          Length = 895

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 ctcatcatcatcctttgctt 355
           ||||||||||||||||||||
Sbjct: 429 ctcatcatcatcctttgctt 410
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 82      ttcactgttaaaactcgcca 101
               ||||||||||||||||||||
Sbjct: 3760616 ttcactgttaaaactcgcca 3760597
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>emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on chromosome 2, complete
              sequence
          Length = 196078

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    tctcttgctccaggaactgg 374
              ||||||||||||||||||||
Sbjct: 105482 tctcttgctccaggaactgg 105463


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,392,192
Number of Sequences: 3902068
Number of extensions: 4392192
Number of successful extensions: 90248
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89982
Number of HSP's gapped (non-prelim): 266
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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