ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18f07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 256 bits (129), Expect = 7e-65 Identities = 225/257 (87%) Strand = Plus / Minus Query: 231 ctttgatctttttgtttatccaaacctcaagcaacatccctgcaccaactccagcagcac 290 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct: 8656693 ctttgatctttttgtttatccaaacctcaagcagcatccctgcgccaactccagcagcac 8656634 Query: 291 aaacagcaccgtagattgccaatgcagacggcaaagatcgtcgaggcagaaagtaacact 350 | |||| || ||||||||||||||||| ||||||||||| ||||||||||| || || | Sbjct: 8656633 acgcagcgccatagattgccaatgcagaaggcaaagatcgccgaggcagaaaatagcatt 8656574 Query: 351 cagggacttgtctgattttcttcggaagacgcttcttgacaaccggctggcttgactcgg 410 |||| |||||||||||||||||||| |||||||| || ||||| || ||||||| |||| Sbjct: 8656573 caggaacttgtctgattttcttcgggagacgctttttaacaactggttggcttgggtcgg 8656514 Query: 411 taataacgggaccactcactgtcttccagtccgcattcttcagcatatctttagtgtctt 470 | | || | ||||| ||||| ||||||||| ||||||||||||||||||| ||||| | Sbjct: 8656513 tgctcaccgaaccaccaactgttttccagtccacattcttcagcatatcttttgtgtcct 8656454 Query: 471 cagtacccatcctgaaa 487 || | |||||||||||| Sbjct: 8656453 cactgcccatcctgaaa 8656437 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 atcatttgcccatctcccagacaa 218 ||||||||||||| |||||||||| Sbjct: 8657133 atcatttgcccatttcccagacaa 8657110
>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0462H08 Length = 139152 Score = 256 bits (129), Expect = 7e-65 Identities = 225/257 (87%) Strand = Plus / Minus Query: 231 ctttgatctttttgtttatccaaacctcaagcaacatccctgcaccaactccagcagcac 290 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct: 88888 ctttgatctttttgtttatccaaacctcaagcagcatccctgcgccaactccagcagcac 88829 Query: 291 aaacagcaccgtagattgccaatgcagacggcaaagatcgtcgaggcagaaagtaacact 350 | |||| || ||||||||||||||||| ||||||||||| ||||||||||| || || | Sbjct: 88828 acgcagcgccatagattgccaatgcagaaggcaaagatcgccgaggcagaaaatagcatt 88769 Query: 351 cagggacttgtctgattttcttcggaagacgcttcttgacaaccggctggcttgactcgg 410 |||| |||||||||||||||||||| |||||||| || ||||| || ||||||| |||| Sbjct: 88768 caggaacttgtctgattttcttcgggagacgctttttaacaactggttggcttgggtcgg 88709 Query: 411 taataacgggaccactcactgtcttccagtccgcattcttcagcatatctttagtgtctt 470 | | || | ||||| ||||| ||||||||| ||||||||||||||||||| ||||| | Sbjct: 88708 tgctcaccgaaccaccaactgttttccagtccacattcttcagcatatcttttgtgtcct 88649 Query: 471 cagtacccatcctgaaa 487 || | |||||||||||| Sbjct: 88648 cactgcccatcctgaaa 88632 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 atcatttgcccatctcccagacaa 218 ||||||||||||| |||||||||| Sbjct: 89328 atcatttgcccatttcccagacaa 89305
>dbj|AK064179.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-B04, full insert sequence Length = 665 Score = 228 bits (115), Expect = 2e-56 Identities = 231/269 (85%), Gaps = 3/269 (1%) Strand = Plus / Minus Query: 231 ctttgatctttttgtttatccaaacctcaagcaacatccctgcaccaactccagcagcac 290 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct: 507 ctttgatctttttgtttatccaaacctcaagcagcatccctgcgccaactccagcagcac 448 Query: 291 aaacagcaccgtagattgccaatgcagacggcaaagatcgtcgaggcagaaagtaacact 350 | ||||| || ||||||||||||||||| |||||| |||| ||||||||||| || || | Sbjct: 447 acacagcgccatagattgccaatgcagaaggcaaatatcgccgaggcagaaaatagcatt 388 Query: 351 cagggacttgtctgattttcttcggaagacgcttcttgacaaccggctggcttgactcgg 410 |||| |||||||| |||||||| || |||||||| || ||||| || ||||||| || | Sbjct: 387 caggaacttgtctaattttctttgggagacgctttttaacaactggttggcttgggtcag 328 Query: 411 taataacgg---gaccactcactgtcttccagtccgcattcttcagcatatctttagtgt 467 || | || | ||||| ||||| ||||||||| ||||||||||||||||||| |||| Sbjct: 327 tagtcactgaaccaccaccaactgttttccagtccacattcttcagcatatcttttgtgt 268 Query: 468 cttcagtacccatcctgaaactgcctgcg 496 | ||| | |||||||||||| |||||||| Sbjct: 267 cctcactgcccatcctgaaaatgcctgcg 239
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 222 bits (112), Expect = 1e-54 Identities = 228/266 (85%), Gaps = 3/266 (1%) Strand = Plus / Plus Query: 231 ctttgatctttttgtttatccaaacctcaagcaacatccctgcaccaactccagcagcac 290 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct: 4212225 ctttgatctttttgtttatccaaacctcaagcagcatccctgcgccaactccagcagcac 4212284 Query: 291 aaacagcaccgtagattgccaatgcagacggcaaagatcgtcgaggcagaaagtaacact 350 | ||||| || ||||||||||||||||| |||||| |||| ||||||||||| || || | Sbjct: 4212285 acacagcgccatagattgccaatgcagaaggcaaatatcgccgaggcagaaaatagcatt 4212344 Query: 351 cagggacttgtctgattttcttcggaagacgcttcttgacaaccggctggcttgactcgg 410 |||| |||||||| |||||||| || |||||||| || ||||| || ||||||| || | Sbjct: 4212345 caggaacttgtctaattttctttgggagacgctttttaacaactggttggcttgggtcag 4212404 Query: 411 taataacgg---gaccactcactgtcttccagtccgcattcttcagcatatctttagtgt 467 || | || | ||||| ||||| ||||||||| ||||||||||||||||||| |||| Sbjct: 4212405 tagtcactgaaccaccaccaactgttttccagtccacattcttcagcatatcttttgtgt 4212464 Query: 468 cttcagtacccatcctgaaactgcct 493 | ||| | |||||||||||| ||||| Sbjct: 4212465 cctcactgcccatcctgaaaatgcct 4212490 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 atcatttgcccatctcccagacaa 218 ||||||||||||| |||||||||| Sbjct: 4211986 atcatttgcccatttcccagacaa 4212009
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 222 bits (112), Expect = 1e-54 Identities = 228/266 (85%), Gaps = 3/266 (1%) Strand = Plus / Plus Query: 231 ctttgatctttttgtttatccaaacctcaagcaacatccctgcaccaactccagcagcac 290 ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct: 57446 ctttgatctttttgtttatccaaacctcaagcagcatccctgcgccaactccagcagcac 57505 Query: 291 aaacagcaccgtagattgccaatgcagacggcaaagatcgtcgaggcagaaagtaacact 350 | ||||| || ||||||||||||||||| |||||| |||| ||||||||||| || || | Sbjct: 57506 acacagcgccatagattgccaatgcagaaggcaaatatcgccgaggcagaaaatagcatt 57565 Query: 351 cagggacttgtctgattttcttcggaagacgcttcttgacaaccggctggcttgactcgg 410 |||| |||||||| |||||||| || |||||||| || ||||| || ||||||| || | Sbjct: 57566 caggaacttgtctaattttctttgggagacgctttttaacaactggttggcttgggtcag 57625 Query: 411 taataacgg---gaccactcactgtcttccagtccgcattcttcagcatatctttagtgt 467 || | || | ||||| ||||| ||||||||| ||||||||||||||||||| |||| Sbjct: 57626 tagtcactgaaccaccaccaactgttttccagtccacattcttcagcatatcttttgtgt 57685 Query: 468 cttcagtacccatcctgaaactgcct 493 | ||| | |||||||||||| ||||| Sbjct: 57686 cctcactgcccatcctgaaaatgcct 57711 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 atcatttgcccatctcccagacaa 218 ||||||||||||| |||||||||| Sbjct: 57207 atcatttgcccatttcccagacaa 57230
>gb|AC174465.2| Medicago truncatula chromosome 2 BAC clone mth2-189f20, complete sequence Length = 90320 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 229 ctctttgatctttttgtttatccaa 253 ||||||||||||||||||||||||| Sbjct: 51451 ctctttgatctttttgtttatccaa 51427
>gb|AC114000.5| Mus musculus BAC clone RP23-161K1 from chromosome 14, complete sequence Length = 212322 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 150 gtgagtctgccaaaccagattgttaccaac 179 |||||||| ||||||||||||||| ||||| Sbjct: 4324 gtgagtcttccaaaccagattgtttccaac 4353
>gb|AC151835.4| Mus musculus BAC clone RP23-333J1 from chromosome 14, complete sequence Length = 215551 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 150 gtgagtctgccaaaccagattgttaccaac 179 |||||||| ||||||||||||||| ||||| Sbjct: 124225 gtgagtcttccaaaccagattgtttccaac 124254
>emb|AL592185.35| Mouse DNA sequence from clone RP23-341J22 on chromosome 11 Contains a novel gene, the Nos2 gene for inducible macrophage nitric oxide synthase 2 and the 3' end of the Lgals9 gene for soluble galactose binding lectin 9, complete sequence Length = 178443 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 410 gtaataacgggaccactcactgtctt 435 |||||| ||||||||||||||||||| Sbjct: 68428 gtaatagcgggaccactcactgtctt 68403
>gb|AC107082.3| Homo sapiens BAC clone RP11-807A15 from 2, complete sequence Length = 112944 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 225 catcctctttgatctttttgtttat 249 ||||||||||||||||||| ||||| Sbjct: 21480 catcctctttgatctttttatttat 21456
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 gacaacgccgccatcctctttgat 237 |||||||||||||||||| ||||| Sbjct: 2011363 gacaacgccgccatcctcattgat 2011386
>emb|AL513493.11| Human DNA sequence from clone RP11-433N2 on chromosome 1 Contains the 5' end of the PDE4B gene for phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), complete sequence Length = 165780 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ttccgtgatacagcttaagc 132 |||||||||||||||||||| Sbjct: 93176 ttccgtgatacagcttaagc 93157
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 ccagcagcacaaacagcacc 300 |||||||||||||||||||| Sbjct: 467213 ccagcagcacaaacagcacc 467194
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 495 cgctgcgtgcgccgtttgccggcg 518 ||||||| |||||||||||||||| Sbjct: 3018424 cgctgcgcgcgccgtttgccggcg 3018401
>gb|AC102268.11| Mus musculus chromosome 18, clone RP24-248J13, complete sequence Length = 164012 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ccactcactgtcttccagtc 441 |||||||||||||||||||| Sbjct: 96217 ccactcactgtcttccagtc 96236 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,545,385 Number of Sequences: 3902068 Number of extensions: 4545385 Number of successful extensions: 88701 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88530 Number of HSP's gapped (non-prelim): 169 length of query: 572 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 549 effective length of database: 17,143,297,704 effective search space: 9411670439496 effective search space used: 9411670439496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
