ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17p15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 40 1.6
2gb|AC146881.3| Otolemur garnettii clone CH256-571D18, complete s... 40 1.6
3gb|AC006836.7| Arabidopsis thaliana chromosome 2 clone F19B11 ma... 38 6.4
4dbj|AB013393.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 38 6.4

>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     tattgttcttcaccatctct 107
              ||||||||||||||||||||
Sbjct: 483183 tattgttcttcaccatctct 483202



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>gb|AC146881.3| Otolemur garnettii clone CH256-571D18, complete sequence
          Length = 240447

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     tattgttcttcaccatctct 107
              ||||||||||||||||||||
Sbjct: 159906 tattgttcttcaccatctct 159925



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>gb|AC006836.7| Arabidopsis thaliana chromosome 2 clone F19B11 map RNSI, complete
            sequence
          Length = 87543

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 90   ttgttcttcaccatctctt 108
            |||||||||||||||||||
Sbjct: 6518 ttgttcttcaccatctctt 6536



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>dbj|AB013393.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJE4
          Length = 63989

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 90    ttgttcttcaccatctctt 108
             |||||||||||||||||||
Sbjct: 25920 ttgttcttcaccatctctt 25938


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 458,269
Number of Sequences: 3902068
Number of extensions: 458269
Number of successful extensions: 24127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24122
Number of HSP's gapped (non-prelim): 5
length of query: 136
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 115
effective length of database: 17,151,101,840
effective search space: 1972376711600
effective search space used: 1972376711600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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