ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd18e17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478750.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3790 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 596 tcacgagttcctttatcggtagagttgtctgccccaaacaactcaagagtcccttt 651 |||||||| |||||||| | ||| |||||||||||||| || ||| |||||||||| Sbjct: 3235 tcacgagtccctttatcagcagatttgtctgccccaaaaaattcacgagtcccttt 3180 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 596 tcacgagttcctttatcggtagagttgtctgccccaaacaactcaagagtcccttt 651 |||||||| |||||||| | ||| |||||||||||||| || ||| |||||||||| Sbjct: 3193 tcacgagtccctttatcagcagatttgtctgccccaaaaaattcacgagtcccttt 3138 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 596 tcacgagttcctttatcggtagagttgtctgccccaaacaactcaagagtcc 647 |||||||| |||||||| | ||| ||||||||||||||||| ||| |||||| Sbjct: 3151 tcacgagtccctttatcagcagatttgtctgccccaaacaattcacgagtcc 3100 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 605 cctttatcggtagagttgtctgccccaaacaactcaagagtcccttt 651 |||||||| | ||| |||||||||||||| || ||| |||||||||| Sbjct: 3268 cctttatcagcagatttgtctgccccaaaaaattcacgagtcccttt 3222
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 596 tcacgagttcctttatcggtagagttgtctgccccaaacaactcaagagtcc 647 |||||||| |||||||| | ||| ||||||||||||||||| ||| |||||| Sbjct: 22779022 tcacgagtccctttatcagcagatttgtctgccccaaacaattcacgagtcc 22779073 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 596 tcacgagttcctttatcggtagagttgtctgccccaaacaactcaagagtcccttt 651 |||||||| |||||||| | ||| |||||||||||||| || ||| |||||||||| Sbjct: 22778980 tcacgagtccctttatcagcagatttgtctgccccaaaaaattcacgagtcccttt 22779035 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 596 tcacgagttcctttatcggtagagttgtctgccccaaacaactcaagagtcccttt 651 |||||||| |||||||| | ||| |||||||||||||| || ||| |||||||||| Sbjct: 22778938 tcacgagtccctttatcagcagatttgtctgccccaaaaaattcacgagtcccttt 22778993 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 605 cctttatcggtagagttgtctgccccaaacaactcaagagtcccttt 651 |||||||| | ||| |||||||||||||| || ||| |||||||||| Sbjct: 22778905 cctttatcagcagatttgtctgccccaaaaaattcacgagtcccttt 22778951
>dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1092_A07 Length = 137081 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 596 tcacgagttcctttatcggtagagttgtctgccccaaacaactcaagagtcc 647 |||||||| |||||||| | ||| ||||||||||||||||| ||| |||||| Sbjct: 98364 tcacgagtccctttatcagcagatttgtctgccccaaacaattcacgagtcc 98415 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 596 tcacgagttcctttatcggtagagttgtctgccccaaacaactcaagagtcccttt 651 |||||||| |||||||| | ||| |||||||||||||| || ||| |||||||||| Sbjct: 98322 tcacgagtccctttatcagcagatttgtctgccccaaaaaattcacgagtcccttt 98377 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 596 tcacgagttcctttatcggtagagttgtctgccccaaacaactcaagagtcccttt 651 |||||||| |||||||| | ||| |||||||||||||| || ||| |||||||||| Sbjct: 98280 tcacgagtccctttatcagcagatttgtctgccccaaaaaattcacgagtcccttt 98335 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 605 cctttatcggtagagttgtctgccccaaacaactcaagagtcccttt 651 |||||||| | ||| |||||||||||||| || ||| |||||||||| Sbjct: 98247 cctttatcagcagatttgtctgccccaaaaaattcacgagtcccttt 98293
>dbj|AK102232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088A08, full insert sequence Length = 3790 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 596 tcacgagttcctttatcggtagagttgtctgccccaaacaactcaagagtcccttt 651 |||||||| |||||||| | ||| |||||||||||||| || ||| |||||||||| Sbjct: 3235 tcacgagtccctttatcagcagatttgtctgccccaaaaaattcacgagtcccttt 3180 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 596 tcacgagttcctttatcggtagagttgtctgccccaaacaactcaagagtcccttt 651 |||||||| |||||||| | ||| |||||||||||||| || ||| |||||||||| Sbjct: 3193 tcacgagtccctttatcagcagatttgtctgccccaaaaaattcacgagtcccttt 3138 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 596 tcacgagttcctttatcggtagagttgtctgccccaaacaactcaagagtcc 647 |||||||| |||||||| | ||| ||||||||||||||||| ||| |||||| Sbjct: 3151 tcacgagtccctttatcagcagatttgtctgccccaaacaattcacgagtcc 3100 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 605 cctttatcggtagagttgtctgccccaaacaactcaagagtcccttt 651 |||||||| | ||| |||||||||||||| || ||| |||||||||| Sbjct: 3268 cctttatcagcagatttgtctgccccaaaaaattcacgagtcccttt 3222
>gb|AY106581.1| Zea mays PCO133576 mRNA sequence Length = 353 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 604 tcctttatcggtagagttgtctgccccaaacaa 636 ||||||||||||||| |||||||| |||||||| Sbjct: 84 tcctttatcggtagacttgtctgctccaaacaa 52
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome Length = 1267782 Score = 48.1 bits (24), Expect = 0.037 Identities = 27/28 (96%) Strand = Plus / Plus Query: 49 caaaattcagttatactatggttcttat 76 ||||||| |||||||||||||||||||| Sbjct: 1031902 caaaattaagttatactatggttcttat 1031929
>gb|AC117203.4| Mus musculus BAC clone RP23-251N4 from chromosome 10, complete sequence Length = 231532 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 482 aaattctcttaaccagcaacaa 503 |||||||||||||||||||||| Sbjct: 193840 aaattctcttaaccagcaacaa 193819
>gb|AC112633.6| Rattus norvegicus 11 BAC CH230-200K21 (Children's Hospital Oakland Research Institute) complete sequence Length = 230130 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 137 aaagagtacaagtataactcagcaga 162 |||||||||||||||||| ||||||| Sbjct: 49676 aaagagtacaagtataacccagcaga 49701
>ref|XM_724596.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01862) partial mRNA Length = 756 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 315 atcatatgtttttgacaagaat 336 |||||||||||||||||||||| Sbjct: 486 atcatatgtttttgacaagaat 465
>gb|AC158611.7| Mus musculus 10 BAC RP23-29D19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 214923 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 482 aaattctcttaaccagcaacaa 503 |||||||||||||||||||||| Sbjct: 154952 aaattctcttaaccagcaacaa 154973
>gb|AC127315.4| Mus musculus BAC clone RP23-218F21 from chromosome 8, complete sequence Length = 207577 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 aaaaatctccacaaataaaac 182 ||||||||||||||||||||| Sbjct: 107551 aaaaatctccacaaataaaac 107531
>emb|BX936436.13| Zebrafish DNA sequence from clone DKEY-16H19 in linkage group 6, complete sequence Length = 200434 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 629 ccaaacaactcaagagtccctttttcatt 657 ||||| ||||||||| ||||||||||||| Sbjct: 148969 ccaaaaaactcaagaatccctttttcatt 148941
>gb|AC124463.2| Mus musculus BAC clone RP24-152K14 from chromosome 1, complete sequence Length = 153199 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 243 ctttcttcctcttttcttcacttct 267 ||||||||||||||||||| ||||| Sbjct: 76447 ctttcttcctcttttcttctcttct 76471
>ref|XM_499924.1| Yarrowia lipolytica CLIB122, YALI0A09900g predicted mRNA Length = 1842 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 461 ctttctgaccacaagatcatg 481 ||||||||||||||||||||| Sbjct: 490 ctttctgaccacaagatcatg 510
>emb|AL137013.4| Human DNA sequence from clone RP11-311P8 on chromosome Xq13.1-13.3 Contains the 3' end of gene FLJ31812, a ribosomal protein L21 (RPL21) pseudogene, a telomeric repeat binding factor (NIMA-interacting) (TERF1) pseudogene and the 3' end of gene FLJ31792, complete sequence Length = 146259 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 gctttcttcctcttttcttca 262 ||||||||||||||||||||| Sbjct: 7727 gctttcttcctcttttcttca 7747
>ref|XM_963063.1| PREDICTED: Tribolium castaneum similar to CG9696-PD, isoform D (LOC656538), mRNA Length = 7839 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 cgctttcttcctcttttcttc 261 ||||||||||||||||||||| Sbjct: 1251 cgctttcttcctcttttcttc 1231
>emb|BX842607.1|OSJN00296 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1248C03, complete sequence Length = 141099 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 gctttcttcctcttttcttca 262 ||||||||||||||||||||| Sbjct: 76748 gctttcttcctcttttcttca 76728
>gb|AC092965.4| Homo sapiens 3 BAC RP11-440K22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187033 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 cataatacaggcaaaaagaaa 133 ||||||||||||||||||||| Sbjct: 93468 cataatacaggcaaaaagaaa 93448
>gb|AC019089.6| Homo sapiens BAC clone RP11-370L14 from 4, complete sequence Length = 177160 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 tcttcctcttttcttcacttc 266 ||||||||||||||||||||| Sbjct: 90533 tcttcctcttttcttcacttc 90513
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 gctttcttcctcttttcttca 262 ||||||||||||||||||||| Sbjct: 1639466 gctttcttcctcttttcttca 1639446
>gb|AC115914.6| Mus musculus chromosome 8, clone RP24-487J5, complete sequence Length = 163170 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 aaaaatctccacaaataaaac 182 ||||||||||||||||||||| Sbjct: 146986 aaaaatctccacaaataaaac 146966
>gb|AY185094.1| Podarcis sicula strain PST cytochrome b (cytb) gene, complete cds; mitochondrial gene for mitochondrial product Length = 1143 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 307 ttatactatggttcttatatg 327
>gb|AY770892.1| Podarcis sicula haplotype 25 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770891.1| Podarcis sicula haplotype 24 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770890.1| Podarcis sicula haplotype 23 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770889.1| Podarcis sicula haplotype 22 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770888.1| Podarcis sicula haplotype 21 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770887.1| Podarcis sicula haplotype 20 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770886.1| Podarcis sicula haplotype 19 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770885.1| Podarcis sicula haplotype 18 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770884.1| Podarcis sicula haplotype 17 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770883.1| Podarcis sicula haplotype 16 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770882.1| Podarcis sicula haplotype 15 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770881.1| Podarcis sicula haplotype 14 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770880.1| Podarcis sicula haplotype 13 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770879.1| Podarcis sicula haplotype 12 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770878.1| Podarcis sicula haplotype 11 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770877.1| Podarcis sicula haplotype 10 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770875.1| Podarcis sicula haplotype 8 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770874.1| Podarcis sicula haplotype 7 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770873.1| Podarcis sicula haplotype 6 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770872.1| Podarcis sicula haplotype 5 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770871.1| Podarcis sicula haplotype 4 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770870.1| Podarcis sicula haplotype 3 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>gb|AY770869.1| Podarcis sicula haplotype 1 cytochrome b (cytb) gene, partial cds; mitochondrial Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatatg 79 ||||||||||||||||||||| Sbjct: 183 ttatactatggttcttatatg 203
>emb|CR407557.10| Zebrafish DNA sequence from clone DKEYP-66B8 in linkage group 6, complete sequence Length = 119597 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 629 ccaaacaactcaagagtccctttttcatt 657 ||||| ||||||||| ||||||||||||| Sbjct: 60872 ccaaaaaactcaagaatccctttttcatt 60900
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 461 ctttctgaccacaagatcatg 481 ||||||||||||||||||||| Sbjct: 999964 ctttctgaccacaagatcatg 999944
>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0028C22, complete sequence Length = 154228 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 caagacttcaaaattcagtt 60 |||||||||||||||||||| Sbjct: 83029 caagacttcaaaattcagtt 83048
>gb|AC145590.3| Mus musculus BAC clone RP24-175D4 from chromosome 19, complete sequence Length = 179063 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 aaaatctccacaaataaaac 182 |||||||||||||||||||| Sbjct: 89304 aaaatctccacaaataaaac 89285
>gb|AC104434.2| Homo sapiens chromosome 3 clone RP11-625B23, complete sequence Length = 192758 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 aaatccattctgtgaaggtt 521 |||||||||||||||||||| Sbjct: 8954 aaatccattctgtgaaggtt 8973
>gb|AC117198.3| Mus musculus BAC clone RP23-127K18 from 9, complete sequence Length = 193044 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ggacaaggcaagacttcaaa 52 |||||||||||||||||||| Sbjct: 137362 ggacaaggcaagacttcaaa 137381
>gb|AC138714.4| Mus musculus chromosome 18 clone RP23-406C12, complete sequence Length = 191928 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gctttcttcctcttttcttc 261 |||||||||||||||||||| Sbjct: 8365 gctttcttcctcttttcttc 8346
>gb|AC133904.9| Mus musculus chromosome 19, clone RP24-143J12, complete sequence Length = 163882 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 aaaatctccacaaataaaac 182 |||||||||||||||||||| Sbjct: 139907 aaaatctccacaaataaaac 139926
>ref|XM_674716.1| Plasmodium berghei strain ANKA hypothetical protein (PB000731.02.0) partial mRNA Length = 2994 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 acaggcaaaaagaaaggtaa 138 |||||||||||||||||||| Sbjct: 2898 acaggcaaaaagaaaggtaa 2917
>emb|AL590807.13| Human DNA sequence from clone RP11-325L2 on chromosome 13 Contains an ADP-ribosylation factor pseudogene, complete sequence Length = 178914 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aaaaagaaaggtaaagagta 144 |||||||||||||||||||| Sbjct: 36995 aaaaagaaaggtaaagagta 36976
>emb|AL589863.11| Human DNA sequence from clone RP11-310J24 on chromosome 10, complete sequence Length = 168231 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 gctttcttcctcttttcttc 261 |||||||||||||||||||| Sbjct: 88565 gctttcttcctcttttcttc 88584
>emb|AL513209.16| Human DNA sequence from clone RP11-177F15 on chromosome 1 Contains part of a novel gene (FLJ33910), complete sequence Length = 140169 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 416 caacccaaaacagaaatttgacag 439 ||||| |||||||||||||||||| Sbjct: 42583 caaccaaaaacagaaatttgacag 42606
>ref|XM_795085.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC582408 (LOC582408), mRNA Length = 1245 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ctgttctgcattctcctttt 23 |||||||||||||||||||| Sbjct: 1023 ctgttctgcattctcctttt 1004
>emb|AL356794.10| Human DNA sequence from clone RP11-551A11 on chromosome 6 Contains a ribosomal protein S3A (40S ribosomal protein S3a, v-fos transformation effector protein 1) (RPS3A)(FTE1) pseudogene, complete sequence Length = 164439 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ttcctcttttcttcacttct 267 |||||||||||||||||||| Sbjct: 65721 ttcctcttttcttcacttct 65740
>emb|AL139420.13| Human DNA sequence from clone RP4-712E4 on chromosome 1p11.1-13.2 Contains the 5' end of the TBX15 gene for T-box 15, a novel gene, the 3' end of the WARS2 gene for tryptophanyl tRNA synthetase 2 (mitochondrial), the 3' end of a novel gene and a CpG island, complete sequence Length = 122122 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ttcacttctggtatcaaaag 278 |||||||||||||||||||| Sbjct: 41862 ttcacttctggtatcaaaag 41881
>gb|AC063948.44| Homo sapiens 12 BAC RP11-321F8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 146502 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 tttcttcctcttttcttcacttct 267 |||||||||||||||||| ||||| Sbjct: 56760 tttcttcctcttttcttcccttct 56783
>gb|AC025669.19| Mus musculus chromosome 14, clone RP23-5O16, complete sequence Length = 203826 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 acaaataaaaccaagtaaaggctt 195 |||||| ||||||||||||||||| Sbjct: 9557 acaaatgaaaccaagtaaaggctt 9580
>gb|AF457461.1| Mustela nivalis cytochrome b (cytb) mRNA, complete cds; mitochondrial gene for mitochondrial product Length = 1140 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatat 78 |||||||||||||||||||| Sbjct: 304 ttatactatggttcttatat 323
>gb|AC104184.2| Homo sapiens chromosome 3 clone RP11-188P20, complete sequence Length = 143034 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 aaatccattctgtgaaggtt 521 |||||||||||||||||||| Sbjct: 26269 aaatccattctgtgaaggtt 26250
>gb|AC018884.6| Homo sapiens BAC clone RP11-369I16 from 4, complete sequence Length = 166300 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 ccaaaacagaaatttgacag 439 |||||||||||||||||||| Sbjct: 113183 ccaaaacagaaatttgacag 113164
>dbj|AK156946.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830109E11 product:unclassifiable, full insert sequence Length = 4673 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 acaaataaaaccaagtaaaggctt 195 |||||| ||||||||||||||||| Sbjct: 2835 acaaatgaaaccaagtaaaggctt 2812
>gb|AC153145.4| Mus musculus BAC clone RP23-222C3 from chromosome 18, complete sequence Length = 193382 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gctttcttcctcttttcttc 261 |||||||||||||||||||| Sbjct: 8365 gctttcttcctcttttcttc 8346
>dbj|AK036080.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630033B02 product:unclassifiable, full insert sequence Length = 3843 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gctttcttcctcttttcttc 261 |||||||||||||||||||| Sbjct: 531 gctttcttcctcttttcttc 512
>gb|AC068561.2|AC068561 Mus musculus strain C57BL6/J chromosome 6 clone RP23-86H7, complete sequence Length = 230839 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 taaaaccaagtaaaggcttc 196 |||||||||||||||||||| Sbjct: 221774 taaaaccaagtaaaggcttc 221793
>gb|AF162137.2|AF162137 Mus musculus WNT-2 gene, partial cds; putative ankyrin-related protein and cystic fibrosis transmembrane conductance regulator (CFTR) genes, complete cds; and unknown gene Length = 357856 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 taaaaccaagtaaaggcttc 196 |||||||||||||||||||| Sbjct: 53438 taaaaccaagtaaaggcttc 53457
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 caagacttcaaaattcagtt 60 |||||||||||||||||||| Sbjct: 19755762 caagacttcaaaattcagtt 19755781
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 acaccattacgcaattttct 102 |||||||||||||||||||| Sbjct: 31122531 acaccattacgcaattttct 31122550
>gb|AC117832.6| Homo sapiens chromosome 15, clone RP11-963M5, complete sequence Length = 171462 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ttcctcttttcttcacttct 267 |||||||||||||||||||| Sbjct: 129626 ttcctcttttcttcacttct 129607
>gb|AC097482.2| Homo sapiens BAC clone RP11-131L11 from 4, complete sequence Length = 160763 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 ccacataatacaggcaaaaa 129 |||||||||||||||||||| Sbjct: 63721 ccacataatacaggcaaaaa 63740
>gb|AC009432.7|AC009432 Homo sapiens chromosome 15, clone RP11-57P19, complete sequence Length = 199609 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ttcctcttttcttcacttct 267 |||||||||||||||||||| Sbjct: 66215 ttcctcttttcttcacttct 66196
>gb|AC153556.5| Mus musculus 10 BAC RP23-395M5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 184751 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 635 aactcaagagtccctttttc 654 |||||||||||||||||||| Sbjct: 148462 aactcaagagtccctttttc 148443
>gb|AC154745.3| Mus musculus BAC clone RP24-395F6 from chromosome 13, complete sequence Length = 144172 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 tcttttgctttctgaccacaagat 477 ||||| |||||||||||||||||| Sbjct: 1373 tctttggctttctgaccacaagat 1396
>gb|AC017088.8| Homo sapiens BAC clone RP11-496P1 from 2, complete sequence Length = 200440 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 gcagcaaacatccatcacat 303 |||||||||||||||||||| Sbjct: 48390 gcagcaaacatccatcacat 48409
>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0014K08 Length = 177263 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 acaccattacgcaattttct 102 |||||||||||||||||||| Sbjct: 48876 acaccattacgcaattttct 48895
>gb|AY188794.1| Mustela nivalis haplotype Ru2 cytochrome b (cytb) gene, partial cds; mitochondrial gene for mitochondrial product Length = 337 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatat 78 |||||||||||||||||||| Sbjct: 266 ttatactatggttcttatat 285
>gb|AY188793.1| Mustela nivalis haplotype Est cytochrome b (cytb) gene, partial cds; mitochondrial gene for mitochondrial product Length = 337 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatat 78 |||||||||||||||||||| Sbjct: 266 ttatactatggttcttatat 285
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 caagacttcaaaattcagtt 60 |||||||||||||||||||| Sbjct: 101448 caagacttcaaaattcagtt 101467
>gb|AC158647.2| Mus musculus 6 BAC RP23-275N13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208007 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 taaaaccaagtaaaggcttc 196 |||||||||||||||||||| Sbjct: 148312 taaaaccaagtaaaggcttc 148331
>emb|AL445594.3|CNS07ED4 Human chromosome 14 DNA sequence BAC R-74H1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171409 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 caaaacagaaatttgacagattgg 444 |||||| ||||||||||||||||| Sbjct: 40679 caaaactgaaatttgacagattgg 40656
>emb|AL355097.5|CNS05TCG Human chromosome 14 DNA sequence BAC R-204N11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 164686 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 caaaacagaaatttgacagattgg 444 |||||| ||||||||||||||||| Sbjct: 17990 caaaactgaaatttgacagattgg 18013
>dbj|AP002006.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-723C19, complete sequence Length = 167355 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 actcagcagaaaaatctcca 172 |||||||||||||||||||| Sbjct: 143718 actcagcagaaaaatctcca 143699
>dbj|AP001981.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-361A21, complete sequence Length = 183481 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 actcagcagaaaaatctcca 172 |||||||||||||||||||| Sbjct: 85016 actcagcagaaaaatctcca 84997
>gb|AC115945.9| Mus musculus chromosome 3, clone RP24-555P13, complete sequence Length = 172240 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ttcctcttttcttcacttct 267 |||||||||||||||||||| Sbjct: 124815 ttcctcttttcttcacttct 124796
>gb|AC004477.1|AC004477 Homo sapiens chromosome 17, clone HRPC890E16, complete sequence Length = 135505 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cccaacccaaaacagaaatt 433 |||||||||||||||||||| Sbjct: 100870 cccaacccaaaacagaaatt 100851
>emb|AL672162.6| Mouse DNA sequence from clone RP23-100C4 on chromosome 2, complete sequence Length = 136483 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 tttcttcctcttttcttcac 263 |||||||||||||||||||| Sbjct: 48398 tttcttcctcttttcttcac 48379
>gb|AC139294.4| Mus musculus BAC clone RP24-239E14 from 14, complete sequence Length = 183363 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 acaaataaaaccaagtaaaggctt 195 |||||| ||||||||||||||||| Sbjct: 137428 acaaatgaaaccaagtaaaggctt 137451
>gb|AC147989.4| Mus musculus BAC clone RP24-468I14 from 18, complete sequence Length = 204168 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 gctttcttcctcttttcttc 261 |||||||||||||||||||| Sbjct: 82479 gctttcttcctcttttcttc 82498
>emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chromosome 13, complete sequence Length = 196737 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 tcttttgctttctgaccacaagat 477 ||||| |||||||||||||||||| Sbjct: 11222 tctttggctttctgaccacaagat 11245
>emb|CT009609.1| Desulfococcus multivorans vrl island Length = 89210 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 acccaaaacagaaatttgac 437 |||||||||||||||||||| Sbjct: 40996 acccaaaacagaaatttgac 41015
>emb|CT025660.9| Mouse DNA sequence from clone RP24-79I19 on chromosome 9, complete sequence Length = 219226 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ggacaaggcaagacttcaaa 52 |||||||||||||||||||| Sbjct: 128302 ggacaaggcaagacttcaaa 128283
>emb|X84060.1|HSTCF11A H.sapiens TCF11 gene, exon 3-6 Length = 5544 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cccaacccaaaacagaaatt 433 |||||||||||||||||||| Sbjct: 655 cccaacccaaaacagaaatt 636
>dbj|AB051270.1| Mustela nivalis mitochondrial cytb gene for cytochrome b, partial cds, isolate:HS928 Length = 402 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatat 78 |||||||||||||||||||| Sbjct: 304 ttatactatggttcttatat 323
>dbj|AB051269.1| Mustela nivalis mitochondrial cytb gene for cytochrome b, partial cds, isolate:HS1171 Length = 402 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatat 78 |||||||||||||||||||| Sbjct: 304 ttatactatggttcttatat 323
>dbj|AB051268.1| Mustela nivalis mitochondrial cytb gene for cytochrome b, partial cds, isolate:HS1119 Length = 402 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatat 78 |||||||||||||||||||| Sbjct: 304 ttatactatggttcttatat 323
>dbj|AB051259.1| Mustela erminea mitochondrial cytb gene for cytochrome b, partial cds, isolate:HEG305HS1759 Length = 402 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ttatactatggttcttatat 78 |||||||||||||||||||| Sbjct: 304 ttatactatggttcttatat 323 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,539,190 Number of Sequences: 3902068 Number of extensions: 7539190 Number of successful extensions: 154682 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 154185 Number of HSP's gapped (non-prelim): 497 length of query: 658 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 635 effective length of database: 17,143,297,704 effective search space: 10885994042040 effective search space used: 10885994042040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
