ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17p10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WSC3_YEAST (Q12215) Cell wall integrity and stress response comp... 28 8.6

>WSC3_YEAST (Q12215) Cell wall integrity and stress response component 3|
           precursor
          Length = 556

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 63  TTXPFSVTXATXXVTYFSSRHTHRNLNYSCEHEXKVPV 176
           TT  FSVT ++  +T  SS HT  +   S      VPV
Sbjct: 255 TTSIFSVTSSSSSITLSSSEHTTVDSRTSSPSSTLVPV 292


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,626,192
Number of Sequences: 219361
Number of extensions: 255055
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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