>gb|AC147572.4| Pan troglodytes BAC clone CH251-412D24 from Y, complete sequence
          Length = 166356

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 121   gacacacacacagaaatctaaa 142
             ||||||||||||||||||||||
Sbjct: 94563 gacacacacacagaaatctaaa 94584

>gb|AC147608.1| Pan troglodytes BAC clone CH251-506P22 from Y, complete sequence
          Length = 195158

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 121   gacacacacacagaaatctaaa 142
             ||||||||||||||||||||||
Sbjct: 57910 gacacacacacagaaatctaaa 57889

>gb|AC146198.2| Pan troglodytes BAC clone CH251-475M5 from Y, complete sequence
          Length = 220557

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 121    gacacacacacagaaatctaaa 142
              ||||||||||||||||||||||
Sbjct: 215118 gacacacacacagaaatctaaa 215097

>gb|AC147361.1| Pan troglodytes BAC clone CH251-528H6 from Y, complete sequence
          Length = 169760

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 121  gacacacacacagaaatctaaa 142
            ||||||||||||||||||||||
Sbjct: 5429 gacacacacacagaaatctaaa 5450

>gb|AC147114.2| Pan troglodytes BAC clone CH251-548O14 from Y, complete sequence
          Length = 229006

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 121   gacacacacacagaaatctaaa 142
             ||||||||||||||||||||||
Sbjct: 30570 gacacacacacagaaatctaaa 30591

>gb|AC146515.2| Pan troglodytes BAC clone CH251-113M4 from Y, complete sequence
          Length = 183460

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 121    gacacacacacagaaatctaaa 142
              ||||||||||||||||||||||
Sbjct: 109619 gacacacacacagaaatctaaa 109598

>gb|AC142348.1| Pan troglodytes BAC clone RP43-5I10 from Y, complete sequence
          Length = 183293

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 121    gacacacacacagaaatctaaa 142
              ||||||||||||||||||||||
Sbjct: 137584 gacacacacacagaaatctaaa 137605

>dbj|BS000677.1| Pan troglodytes chromosome Y clone: PTB-391J06, complete sequence
          Length = 171013

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 121   gacacacacacagaaatctaaa 142
             ||||||||||||||||||||||
Sbjct: 99406 gacacacacacagaaatctaaa 99385

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 121      gacacacacacagaaatctaaa 142
                ||||||||||||||||||||||
Sbjct: 11527399 gacacacacacagaaatctaaa 11527378



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 121      gacacacacacagaaatctaaa 142
                ||||||||||||||||||||||
Sbjct: 10658047 gacacacacacagaaatctaaa 10658068



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 121     gacacacacacagaaatctaaa 142
               ||||||||||||||||||||||
Sbjct: 3628940 gacacacacacagaaatctaaa 3628919



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 121     gacacacacacagaaatctaaa 142
               ||||||||||||||||||||||
Sbjct: 2689281 gacacacacacagaaatctaaa 2689302

>gb|AC016637.7| Homo sapiens chromosome 5 clone RP11-34J15, complete sequence
          Length = 173317

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 122   acacacacacagaaatctaaac 143
             ||||||||||||||||||||||
Sbjct: 11869 acacacacacagaaatctaaac 11848

>gb|AC151800.2| Pan troglodytes BAC clone CH251-261E10 from chromosome y, complete
            sequence
          Length = 149719

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 121  gacacacacacagaaatctaaa 142
            ||||||||||||||||||||||
Sbjct: 7817 gacacacacacagaaatctaaa 7796

>gb|AC148933.3| Pan troglodytes BAC clone CH251-571K7 from chromosome y, complete
              sequence
          Length = 171231

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 121    gacacacacacagaaatctaaa 142
              ||||||||||||||||||||||
Sbjct: 138190 gacacacacacagaaatctaaa 138211

>gb|AC007359.3|AC007359 Homo sapiens BAC clone RP11-66M18 from Y, complete sequence
          Length = 100627

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 121  gacacacacacagaaatctaaa 142
            ||||||||||||||||||||||
Sbjct: 3616 gacacacacacagaaatctaaa 3595

>gb|AC016752.2|AC016752 Homo sapiens BAC clone RP11-506M9 from Y, complete sequence
          Length = 166436

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 121   gacacacacacagaaatctaaa 142
             ||||||||||||||||||||||
Sbjct: 42703 gacacacacacagaaatctaaa 42682

>gb|AC008175.2|AC008175 Homo sapiens BAC clone RP11-427G18 from Y, complete sequence
          Length = 205237

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 121    gacacacacacagaaatctaaa 142
              ||||||||||||||||||||||
Sbjct: 100702 gacacacacacagaaatctaaa 100723

>gb|AC007965.3|AC007965 Homo sapiens BAC clone RP11-245K4 from Y, complete sequence
          Length = 182083

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 121    gacacacacacagaaatctaaa 142
              ||||||||||||||||||||||
Sbjct: 137296 gacacacacacagaaatctaaa 137317

>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 121     gacacacacacagaaatctaaa 142
               ||||||||||||||||||||||
Sbjct: 4214191 gacacacacacagaaatctaaa 4214212



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 121     gacacacacacagaaatctaaa 142
               ||||||||||||||||||||||
Sbjct: 1834115 gacacacacacagaaatctaaa 1834094



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 121    gacacacacacagaaatctaaa 142
              ||||||||||||||||||||||
Sbjct: 739797 gacacacacacagaaatctaaa 739818



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 121    gacacacacacagaaatctaaa 142
              ||||||||||||||||||||||
Sbjct: 224826 gacacacacacagaaatctaaa 224805

>gb|AC087101.2| Rattus norvegicus strain Brown Norway clone RP31-230B14, complete
            sequence
          Length = 27615

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 125  cacacacagaaatctaaacta 145
            |||||||||||||||||||||
Sbjct: 3487 cacacacagaaatctaaacta 3507

>gb|AC087042.2| Rattus norvegicus strain Brown Norway clone RP31-314L24, complete
              sequence
          Length = 110542

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 125    cacacacagaaatctaaacta 145
              |||||||||||||||||||||
Sbjct: 109979 cacacacagaaatctaaacta 109999

>gb|AC096070.7| Rattus norvegicus 4 BAC CH230-20J7 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 231332

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 125   cacacacagaaatctaaacta 145
             |||||||||||||||||||||
Sbjct: 77853 cacacacagaaatctaaacta 77833

>gb|AC097261.6| Homo sapiens X BAC RP11-109P4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 97628

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   acacacacacagaaatctaaa 142
             |||||||||||||||||||||
Sbjct: 87283 acacacacacagaaatctaaa 87263

>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 125    cacacacagaaatctaaacta 145
              |||||||||||||||||||||
Sbjct: 570553 cacacacagaaatctaaacta 570573

>emb|BX294378.5| Mouse DNA sequence from clone RP23-457B12 on chromosome 2, complete
            sequence
          Length = 10516

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 122  acacacacacagaaatctaaa 142
            |||||||||||||||||||||
Sbjct: 8603 acacacacacagaaatctaaa 8623

>emb|AL928926.9| Mouse DNA sequence from clone RP23-443G7 on chromosome 2, complete
           sequence
          Length = 211456

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 122 acacacacacagaaatctaaa 142
           |||||||||||||||||||||
Sbjct: 87  acacacacacagaaatctaaa 107

>gb|AC123647.9| Mus musculus chromosome 3, clone RP23-105J10, complete sequence
          Length = 202415

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    acacagaaatctaaactaca 147
              ||||||||||||||||||||
Sbjct: 199134 acacagaaatctaaactaca 199115

>ref|NG_004832.1| Homo sapiens chromosome Y inverted repeat IR2, centromeric (IR2@) on
              chromosome Y
          Length = 389013

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    gacacacacacagaaatcta 140
              ||||||||||||||||||||
Sbjct: 313491 gacacacacacagaaatcta 313510

>gb|AC125039.4| Mus musculus BAC clone RP23-335C3 from chromosome 6, complete
            sequence
          Length = 222535

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 122  acacacacacagaaatctaaacta 145
            ||||||||||| ||||||||||||
Sbjct: 2167 acacacacacacaaatctaaacta 2190

>gb|AC098616.2| Homo sapiens chromosome 3 clone RP11-279I18, complete sequence
          Length = 159629

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   acacacacacagaaatctaa 141
             ||||||||||||||||||||
Sbjct: 91114 acacacacacagaaatctaa 91133

>gb|AC092503.2| Homo sapiens chromosome 3 clone RP11-539L2, complete sequence
          Length = 195568

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   acacacacacagaaatctaa 141
             ||||||||||||||||||||
Sbjct: 34832 acacacacacagaaatctaa 34851

>emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 in linkage group 15,
             complete sequence
          Length = 205794

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   acacacacacagaaatctaa 141
             ||||||||||||||||||||
Sbjct: 23835 acacacacacagaaatctaa 23854

>gb|AC154002.8| Mus musculus 6 BAC RP24-239G21 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 188768

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 122    acacacacacagaaatctaaacta 145
              ||||||||||| ||||||||||||
Sbjct: 119070 acacacacacacaaatctaaacta 119093

>gb|AC021107.3|AC021107 Homo sapiens BAC clone RP11-178M5 from Y, complete sequence
          Length = 160601

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   gacacacacacagaaatcta 140
             ||||||||||||||||||||
Sbjct: 45210 gacacacacacagaaatcta 45229

>gb|AC009952.4|AC009952 Homo sapiens BAC clone RP11-175I4 from Y, complete sequence
          Length = 148058

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    gacacacacacagaaatcta 140
              ||||||||||||||||||||
Sbjct: 112316 gacacacacacagaaatcta 112297

>emb|CR388135.16| Zebrafish DNA sequence from clone CH211-152C12 in linkage group 19,
              complete sequence
          Length = 159848

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    acacacacacagaaatctaa 141
              ||||||||||||||||||||
Sbjct: 150950 acacacacacagaaatctaa 150969

>gb|AC115888.10| Mus musculus chromosome 3, clone RP24-399D16, complete sequence
          Length = 142265

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   acacagaaatctaaactaca 147
             ||||||||||||||||||||
Sbjct: 11272 acacagaaatctaaactaca 11253

>emb|AL805901.6| Mouse DNA sequence from clone RP23-24K4 on chromosome X, complete
              sequence
          Length = 243012

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    acacacacacagaaatctaa 141
              ||||||||||||||||||||
Sbjct: 134571 acacacacacagaaatctaa 134552


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,262,652
Number of Sequences: 3902068
Number of extensions: 11262652
Number of successful extensions: 244807
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 244354
Number of HSP's gapped (non-prelim): 453
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)