ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17p09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474436.1| Oryza sativa (japonica cultivar-group), predic... 139 1e-29
2dbj|AK060617.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
3emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4,... 70 1e-08
4emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 70 1e-08
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
6emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 70 1e-08
7emb|AL596165.1| Listeria innocua Clip11262 complete genome, segm... 44 0.63
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.63
9dbj|AP003799.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.63
10dbj|AP004751.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.63
11gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.63
12ref|XM_755121.1| Ustilago maydis 521 hypothetical protein (UM040... 42 2.5
13gb|AC021076.5| Homo sapiens chromosome 5 clone CTB-166J1, comple... 42 2.5
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
15gb|AC011247.10| Homo sapiens BAC clone RP11-541E12 from 2, compl... 42 2.5
16dbj|AP005767.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
17dbj|AP005780.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
18gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 9.9
19ref|XM_959950.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.9
20ref|XM_327781.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.9
21gb|DQ226929.1| Boechera divaricarpa isolate SLW-E-G08 mRNA sequence 40 9.9
22gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.9
23emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete ch... 40 9.9
24emb|AL596342.3| Human DNA sequence from clone RP11-198A7 on chro... 40 9.9
25emb|AL450322.17| Human DNA sequence from clone RP11-184A2 on chr... 40 9.9
26emb|AL133264.10| Human DNA sequence from clone RP3-369A17 on chr... 40 9.9
27ref|XM_963896.1| PREDICTED: Tribolium castaneum similar to CG134... 40 9.9
28gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genom... 40 9.9
29gb|AY355337.1| Lilium longiflorum pollen-specific DnaJ-like prot... 40 9.9
30dbj|AP004253.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
31gb|AC174673.2| Mus musculus BAC clone RP24-435P4 from chromosome... 40 9.9
32gb|DQ268507.1| Xenopus laevis complement C2 mRNA, partial cds 40 9.9
33gb|AC026225.5| Homo sapiens chromosome 10 clone RP11-78C6, compl... 40 9.9
34gb|AC098850.2| Homo sapiens chromosome 17, clone RP11-92B11, com... 40 9.9
35emb|BX510360.8| Zebrafish DNA sequence from clone DKEY-265A7 in ... 40 9.9
36tpg|BK001589.1| TPA: TPA_exp: Homo sapiens chromosome 17 distal ... 40 9.9
37dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
40gb|AC139667.5| Homo sapiens 3 BAC RP11-88B8 (Roswell Park Cancer... 40 9.9
41gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complet... 40 9.9
42gb|AC126352.6| Homo sapiens chromosome 17, clone CTD-2509K7, com... 40 9.9
43gb|AC019195.10| Homo sapiens BAC clone RP11-355K7 from 2, comple... 40 9.9
44gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, compl... 40 9.9
45gb|AC022596.9|AC022596 Homo sapiens chromosome 17, clone RP11-21... 40 9.9
46gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, comple... 40 9.9
47gb|AC135600.3| Oryza sativa chromosome 3 BAC OSJNBb0047K21 genom... 40 9.9
48dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 9.9
49dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
50dbj|AP005566.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
51dbj|AP004647.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
52gb|AC165150.3| Mus musculus BAC clone RP24-105I10 from chromosom... 40 9.9
53gb|AC103623.13| Mus musculus chromosome 5, clone RP24-253A20, co... 40 9.9
54emb|AL445595.6|HS594J14 Homo sapiens chromosome 9 BAC RP11-594J1... 40 9.9
55gb|AC174672.2| Mus musculus BAC clone RP24-566B4 from chromosome... 40 9.9
56gb|AC140377.4| Mus musculus BAC clone RP24-84K14 from chromosome... 40 9.9
57gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.9
58emb|AL935068.5|CNS08CCK Oryza sativa chromosome 12, . Partial se... 40 9.9
59emb|AL645668.15| Mouse DNA sequence from clone RP23-32L21 on chr... 40 9.9 
>ref|XM_474436.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 825

 Score =  139 bits (70), Expect = 1e-29
 Identities = 117/133 (87%)
 Strand = Plus / Minus

                                                                       
Query: 340 ttgtatgcattgacgcanagcttgaacttctcctcggctaccgcctgtgaagagcccgga 399
           |||||||| ||||| || ||||| |||||||| ||||| || |||||||| ||||| || 
Sbjct: 794 ttgtatgcgttgacacaaagcttaaacttctcttcggccacggcctgtgatgagcctggg 735

                                                                       
Query: 400 tgcttgtcagggtgccacctcagagcagacgcgcggaaggctgttttgacatcatctagg 459
           ||||||||||||||||||||||||||||| || ||||| || ||||||||| ||||||| 
Sbjct: 734 tgcttgtcagggtgccacctcagagcagatgcccggaaagcagttttgacagcatctaga 675

                        
Query: 460 gttagtggaccac 472
           |||||||||||||
Sbjct: 674 gttagtggaccac 662



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                 
Query: 611 acgatgaatctctgaagtgaaaaccctcccatgatgcatgggaccaggtaaaac 664
           |||||||||||||||||  ||||| |||||| |||  |||||||||||||||||
Sbjct: 535 acgatgaatctctgaagctaaaactctcccacgatatatgggaccaggtaaaac 482
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>dbj|AK060617.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B11, full
            insert sequence
          Length = 1347

 Score =  139 bits (70), Expect = 1e-29
 Identities = 117/133 (87%)
 Strand = Plus / Minus

                                                                        
Query: 340  ttgtatgcattgacgcanagcttgaacttctcctcggctaccgcctgtgaagagcccgga 399
            |||||||| ||||| || ||||| |||||||| ||||| || |||||||| ||||| || 
Sbjct: 1021 ttgtatgcgttgacacaaagcttaaacttctcttcggccacggcctgtgatgagcctggg 962

                                                                        
Query: 400  tgcttgtcagggtgccacctcagagcagacgcgcggaaggctgttttgacatcatctagg 459
            ||||||||||||||||||||||||||||| || ||||| || ||||||||| ||||||| 
Sbjct: 961  tgcttgtcagggtgccacctcagagcagatgcccggaaagcagttttgacagcatctaga 902

                         
Query: 460  gttagtggaccac 472
            |||||||||||||
Sbjct: 901  gttagtggaccac 889



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                 
Query: 611 acgatgaatctctgaagtgaaaaccctcccatgatgcatgggaccaggtaaaac 664
           |||||||||||||||||  ||||| |||||| |||  |||||||||||||||||
Sbjct: 762 acgatgaatctctgaagctaaaactctcccacgatatatgggaccaggtaaaac 709
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>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12,
              complete sequence
          Length = 144670

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                     
Query: 383    cctgtgaagagcccggatgcttgtcagggtgccacctcagagcagacgcgcggaa 437
              ||||||| ||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct: 100872 cctgtgatgagcctgggtgcttgtcagggtgccacctcagagcagatgcccggaa 100926



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                    
Query: 611    acgatgaatctctgaagtgaaaaccctcccatgatgcatgggaccaggtaaaac 664
              |||||||||||||||||  ||||| |||||| |||  |||||||||||||||||
Sbjct: 101207 acgatgaatctctgaagctaaaactctcccacgatatatgggaccaggtaaaac 101260



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 442    gttttgacatcatctagggttagtggaccac 472
              ||||||||| ||||||| |||||||||||||
Sbjct: 101050 gttttgacagcatctagagttagtggaccac 101080
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>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                     
Query: 383    cctgtgaagagcccggatgcttgtcagggtgccacctcagagcagacgcgcggaa 437
              ||||||| ||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct: 123470 cctgtgatgagcctgggtgcttgtcagggtgccacctcagagcagatgcccggaa 123416



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                   
Query: 611    acgatgaatctctgaagtgaaaaccctcccatgatgcatgggaccaggtaaaa 663
              |||||||||||| ||||  ||||| |||||| |||  ||||||||||||||||
Sbjct: 123135 acgatgaatctccgaagctaaaactctcccacgatatatgggaccaggtaaaa 123083



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 442    gttttgacatcatctagggttagtggaccac 472
              ||||||||| ||||||| |||||||||||||
Sbjct: 123292 gttttgacagcatctagagttagtggaccac 123262
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                       
Query: 383      cctgtgaagagcccggatgcttgtcagggtgccacctcagagcagacgcgcggaa 437
                ||||||| ||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct: 35164360 cctgtgatgagcctgggtgcttgtcagggtgccacctcagagcagatgcccggaa 35164414



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                      
Query: 611      acgatgaatctctgaagtgaaaaccctcccatgatgcatgggaccaggtaaaac 664
                |||||||||||||||||  ||||| |||||| |||  |||||||||||||||||
Sbjct: 35164695 acgatgaatctctgaagctaaaactctcccacgatatatgggaccaggtaaaac 35164748



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 442      gttttgacatcatctagggttagtggaccac 472
                ||||||||| ||||||| |||||||||||||
Sbjct: 35164538 gttttgacagcatctagagttagtggaccac 35164568
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>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete
             sequence
          Length = 82895

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                    
Query: 383   cctgtgaagagcccggatgcttgtcagggtgccacctcagagcagacgcgcggaa 437
             ||||||| ||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct: 33576 cctgtgatgagcctgggtgcttgtcagggtgccacctcagagcagatgcccggaa 33630



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                  
Query: 611   acgatgaatctctgaagtgaaaaccctcccatgatgcatgggaccaggtaaaa 663
             |||||||||||| ||||  ||||| |||||| |||  ||||||||||||||||
Sbjct: 33911 acgatgaatctccgaagctaaaactctcccacgatatatgggaccaggtaaaa 33963



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 442   gttttgacatcatctagggttagtggaccac 472
             ||||||||| ||||||| |||||||||||||
Sbjct: 33754 gttttgacagcatctagagttagtggaccac 33784
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>emb|AL596165.1| Listeria innocua Clip11262 complete genome, segment 3/12
          Length = 249050

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 244    caagagatggaacgattttctt 265
              ||||||||||||||||||||||
Sbjct: 229924 caagagatggaacgattttctt 229945
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 169     tgctgaagaaaggaacaaacaa 190
               ||||||||||||||||||||||
Sbjct: 7586688 tgctgaagaaaggaacaaacaa 7586667



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 534      gtcgtcgtcgtcgctttcgtcttc 557
                ||||||||||||||| ||||||||
Sbjct: 17352752 gtcgtcgtcgtcgctctcgtcttc 17352775
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>dbj|AP003799.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1006_H01
          Length = 113769

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 169    tgctgaagaaaggaacaaacaa 190
              ||||||||||||||||||||||
Sbjct: 113769 tgctgaagaaaggaacaaacaa 113748
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>dbj|AP004751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0494D11
          Length = 149198

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 169   tgctgaagaaaggaacaaacaa 190
             ||||||||||||||||||||||
Sbjct: 11883 tgctgaagaaaggaacaaacaa 11862
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 536     cgtcgtcgtcgctttcgtcttc 557
               ||||||||||||||||||||||
Sbjct: 2500797 cgtcgtcgtcgctttcgtcttc 2500818
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>ref|XM_755121.1| Ustilago maydis 521 hypothetical protein (UM04067.1) partial mRNA
          Length = 1854

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 536  cgtcgtcgtcgctttcgtctt 556
            |||||||||||||||||||||
Sbjct: 1267 cgtcgtcgtcgctttcgtctt 1247
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>gb|AC021076.5| Homo sapiens chromosome 5 clone CTB-166J1, complete sequence
          Length = 92068

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    tacaacacaatctccttccat 113
             |||||||||||||||||||||
Sbjct: 51090 tacaacacaatctccttccat 51070
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 533     tgtcgtcgtcgtcgctttcgtcttc 557
               |||||||||||||||| ||||||||
Sbjct: 9074246 tgtcgtcgtcgtcgctctcgtcttc 9074270



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 534      gtcgtcgtcgtcgctttcgtcttc 557
                ||||||||||||||| ||||||||
Sbjct: 10191891 gtcgtcgtcgtcgctctcgtcttc 10191868
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>gb|AC011247.10| Homo sapiens BAC clone RP11-541E12 from 2, complete sequence
          Length = 208655

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 682   aaagatggtctcaaaaacttt 702
             |||||||||||||||||||||
Sbjct: 98750 aaagatggtctcaaaaacttt 98730
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>dbj|AP005767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0035G04
          Length = 155636

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 533   tgtcgtcgtcgtcgctttcgtcttc 557
             |||||||||||||||| ||||||||
Sbjct: 45031 tgtcgtcgtcgtcgctctcgtcttc 45055
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>dbj|AP005780.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0051H02
          Length = 136520

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 533    tgtcgtcgtcgtcgctttcgtcttc 557
              |||||||||||||||| ||||||||
Sbjct: 117842 tgtcgtcgtcgtcgctctcgtcttc 117866
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   tcgtcgtcgctttcgtcttc 557
             ||||||||||||||||||||
Sbjct: 34630 tcgtcgtcgctttcgtcttc 34611
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>ref|XM_959950.1| Neurospora crassa OR74A hypothetical protein (NCU07496.1) partial
            mRNA
          Length = 6423

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 531  ggtgtcgtcgtcgtcgctttcgtcttcgctctcgctttca 570
            |||||||||||||||| | ||||| |||  ||||||||||
Sbjct: 5877 ggtgtcgtcgtcgtcgttgtcgtcgtcgtcctcgctttca 5838
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>ref|XM_327781.1| Neurospora crassa OR74A hypothetical protein (NCU07496.1) partial
            mRNA
          Length = 6423

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 531  ggtgtcgtcgtcgtcgctttcgtcttcgctctcgctttca 570
            |||||||||||||||| | ||||| |||  ||||||||||
Sbjct: 5877 ggtgtcgtcgtcgtcgttgtcgtcgtcgtcctcgctttca 5838
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>gb|DQ226929.1| Boechera divaricarpa isolate SLW-E-G08 mRNA sequence
          Length = 645

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 656 aggtaaaaccctgggtgatg 675
           ||||||||||||||||||||
Sbjct: 35  aggtaaaaccctgggtgatg 54
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 534      gtcgtcgtcgtcgctttcgtcttc 557
                ||||||||||||||| ||||||||
Sbjct: 25442637 gtcgtcgtcgtcgctctcgtcttc 25442614
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>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12
          Length = 299350

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 539    cgtcgtcgctttcgtcttcg 558
              ||||||||||||||||||||
Sbjct: 184208 cgtcgtcgctttcgtcttcg 184189
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>emb|AL596342.3| Human DNA sequence from clone RP11-198A7 on chromosome 1 Contains the 5'
              end of the RGS18 gene for regulator of G-protein signalling
              18, complete sequence
          Length = 154968

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     tgaaataaccatctggattt 39
              ||||||||||||||||||||
Sbjct: 103768 tgaaataaccatctggattt 103749
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>emb|AL450322.17| Human DNA sequence from clone RP11-184A2 on chromosome 10 Contains the
             3' end of the COPEB gene for core promoter element binding
             protein (GBF ZF9 Zf9 BCD1 CPBP KLF6) and two novel genes,
             complete sequence
          Length = 94162

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 617   aatctctgaagtgaaaaccc 636
             ||||||||||||||||||||
Sbjct: 40799 aatctctgaagtgaaaaccc 40780
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>emb|AL133264.10| Human DNA sequence from clone RP3-369A17 on chromosome 6p22.1-22.3
             Contains the 5' end of gene FLJ12619 (DKFZP564G182), a
             sigma 1 subunit adaptor-related protein complex 3 (AP3S1)
             (CLAPS3,Sigma3A) pseudogene and gene geminin (LOC51053).
             Contains 3 CpG islands, complete sequence
          Length = 83820

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 634   ccctcccatgatgcatggga 653
             ||||||||||||||||||||
Sbjct: 16771 ccctcccatgatgcatggga 16752
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>ref|XM_963896.1| PREDICTED: Tribolium castaneum similar to CG13467-PA (LOC657436),
           mRNA
          Length = 705

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 534 gtcgtcgtcgtcgctttcgt 553
           ||||||||||||||||||||
Sbjct: 270 gtcgtcgtcgtcgctttcgt 251
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>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence,
           complete sequence
          Length = 152828

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 534 gtcgtcgtcgtcgctttcgtcttc 557
           ||||||||||||||| ||||||||
Sbjct: 723 gtcgtcgtcgtcgctctcgtcttc 746
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>gb|AY355337.1| Lilium longiflorum pollen-specific DnaJ-like protein mRNA, complete
           cds
          Length = 972

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ggatgcttgtcagggtgcca 416
           ||||||||||||||||||||
Sbjct: 125 ggatgcttgtcagggtgcca 106
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>dbj|AP004253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1116_C07
          Length = 108208

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    agatgatatgaaataaccat 31
             ||||||||||||||||||||
Sbjct: 86908 agatgatatgaaataaccat 86889
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>gb|AC174673.2| Mus musculus BAC clone RP24-435P4 from chromosome 7, complete sequence
          Length = 140309

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 614   atgaatctctgaagtgaaaa 633
             ||||||||||||||||||||
Sbjct: 91411 atgaatctctgaagtgaaaa 91392
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>gb|DQ268507.1| Xenopus laevis complement C2 mRNA, partial cds
          Length = 2498

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  tggctctgttggctggctca 145
            ||||||||||||||||||||
Sbjct: 1757 tggctctgttggctggctca 1738
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>gb|AC026225.5| Homo sapiens chromosome 10 clone RP11-78C6, complete sequence
          Length = 201173

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 634   ccctcccatgatgcatggga 653
             ||||||||||||||||||||
Sbjct: 73102 ccctcccatgatgcatggga 73083
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>gb|AC098850.2| Homo sapiens chromosome 17, clone RP11-92B11, complete sequence
          Length = 178965

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 80     tattgctacatgttacaacacaat 103
              ||||| ||||||||||||||||||
Sbjct: 114878 tattgatacatgttacaacacaat 114855
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>emb|BX510360.8| Zebrafish DNA sequence from clone DKEY-265A7 in linkage group 2, complete
              sequence
          Length = 213323

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    gaaaacgaatgctgaagaaa 179
              ||||||||||||||||||||
Sbjct: 122010 gaaaacgaatgctgaagaaa 122029
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>tpg|BK001589.1| TPA: TPA_exp: Homo sapiens chromosome 17 distal SMS-REP low-copy
             repeat, genomic sequence
          Length = 176482

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 80    tattgctacatgttacaacacaat 103
             ||||| ||||||||||||||||||
Sbjct: 50909 tattgatacatgttacaacacaat 50886
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 534      gtcgtcgtcgtcgctttcgtcttc 557
                ||||||||||||||| ||||||||
Sbjct: 16719113 gtcgtcgtcgtcgctctcgtcttc 16719136
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 534      gtcgtcgtcgtcgctttcgtcttc 557
                ||||||||||||||| ||||||||
Sbjct: 25533946 gtcgtcgtcgtcgctctcgtcttc 25533923
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 12       agatgatatgaaataaccat 31
                ||||||||||||||||||||
Sbjct: 11633112 agatgatatgaaataaccat 11633093
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>gb|AC139667.5| Homo sapiens 3 BAC RP11-88B8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 135668

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 564   gctttcaactctttgtcttc 583
             ||||||||||||||||||||
Sbjct: 90352 gctttcaactctttgtcttc 90333
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>gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complete sequence
          Length = 191540

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   aggtgggtgcagggaagagc 211
             ||||||||||||||||||||
Sbjct: 90213 aggtgggtgcagggaagagc 90232
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>gb|AC126352.6| Homo sapiens chromosome 17, clone CTD-2509K7, complete sequence
          Length = 211403

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 80     tattgctacatgttacaacacaat 103
              ||||| ||||||||||||||||||
Sbjct: 128154 tattgatacatgttacaacacaat 128177
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>gb|AC019195.10| Homo sapiens BAC clone RP11-355K7 from 2, complete sequence
          Length = 143823

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tgaagaaaggaacaaacaac 191
             ||||||||||||||||||||
Sbjct: 57853 tgaagaaaggaacaaacaac 57872
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>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence
          Length = 219471

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  aggtgggtgcagggaagagc 211
            ||||||||||||||||||||
Sbjct: 9913 aggtgggtgcagggaagagc 9894
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>gb|AC022596.9|AC022596 Homo sapiens chromosome 17, clone RP11-219A15, complete sequence
          Length = 192337

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 80     tattgctacatgttacaacacaat 103
              ||||| ||||||||||||||||||
Sbjct: 136185 tattgatacatgttacaacacaat 136208
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>gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, complete sequence
          Length = 166299

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aggtgggtgcagggaagagc 211
             ||||||||||||||||||||
Sbjct: 18978 aggtgggtgcagggaagagc 18959
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>gb|AC135600.3| Oryza sativa chromosome 3 BAC OSJNBb0047K21 genomic sequence, complete
             sequence
          Length = 117046

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 534   gtcgtcgtcgtcgctttcgtcttc 557
             ||||||||||||||| ||||||||
Sbjct: 92215 gtcgtcgtcgtcgctctcgtcttc 92238
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     atctccttccatgacgtcgg 121
               ||||||||||||||||||||
Sbjct: 7810484 atctccttccatgacgtcgg 7810503
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>dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0551A11
          Length = 132384

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    agatgatatgaaataaccat 31
             ||||||||||||||||||||
Sbjct: 72236 agatgatatgaaataaccat 72217
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>dbj|AP005566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1253_E02
          Length = 166645

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 534    gtcgtcgtcgtcgctttcgtcttc 557
              ||||||||||||||| ||||||||
Sbjct: 151569 gtcgtcgtcgtcgctctcgtcttc 151546
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>dbj|AP004647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1267_E11
          Length = 117073

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 534   gtcgtcgtcgtcgctttcgtcttc 557
             ||||||||||||||| ||||||||
Sbjct: 36376 gtcgtcgtcgtcgctctcgtcttc 36399
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>gb|AC165150.3| Mus musculus BAC clone RP24-105I10 from chromosome 7, complete sequence
          Length = 210763

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 614   atgaatctctgaagtgaaaa 633
             ||||||||||||||||||||
Sbjct: 65248 atgaatctctgaagtgaaaa 65229
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>gb|AC103623.13| Mus musculus chromosome 5, clone RP24-253A20, complete sequence
          Length = 170641

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    ggagcttggctctgttggct 139
              ||||||||||||||||||||
Sbjct: 147598 ggagcttggctctgttggct 147579
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>emb|AL445595.6|HS594J14 Homo sapiens chromosome 9 BAC RP11-594J14, complete sequence
          Length = 161567

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 692   tcaaaaactttttcaggatt 711
             ||||||||||||||||||||
Sbjct: 87557 tcaaaaactttttcaggatt 87538
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>gb|AC174672.2| Mus musculus BAC clone RP24-566B4 from chromosome 7, complete sequence
          Length = 167219

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 614    atgaatctctgaagtgaaaa 633
              ||||||||||||||||||||
Sbjct: 119252 atgaatctctgaagtgaaaa 119271
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>gb|AC140377.4| Mus musculus BAC clone RP24-84K14 from chromosome 7, complete sequence
          Length = 246043

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 614    atgaatctctgaagtgaaaa 633
              ||||||||||||||||||||
Sbjct: 243847 atgaatctctgaagtgaaaa 243828
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 534      gtcgtcgtcgtcgctttcgtcttc 557
                ||||||||||||||| ||||||||
Sbjct: 16672346 gtcgtcgtcgtcgctctcgtcttc 16672369
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>emb|AL935068.5|CNS08CCK Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0088J13
             of library OSJNBb from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 116974

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 534   gtcgtcgtcgtcgctttcgtcttc 557
             ||||||||||||||| ||||||||
Sbjct: 66288 gtcgtcgtcgtcgctctcgtcttc 66265
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>emb|AL645668.15| Mouse DNA sequence from clone RP23-32L21 on chromosome 4, complete
             sequence
          Length = 143213

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   gcttggctctgttggctggc 142
             ||||||||||||||||||||
Sbjct: 57820 gcttggctctgttggctggc 57801


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,122,318
Number of Sequences: 3902068
Number of extensions: 6122318
Number of successful extensions: 112710
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112098
Number of HSP's gapped (non-prelim): 612
length of query: 723
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 700
effective length of database: 17,143,297,704
effective search space: 12000308392800
effective search space used: 12000308392800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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