Clone Name | rbasd17p09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_474436.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 825 Score = 139 bits (70), Expect = 1e-29 Identities = 117/133 (87%) Strand = Plus / Minus Query: 340 ttgtatgcattgacgcanagcttgaacttctcctcggctaccgcctgtgaagagcccgga 399 |||||||| ||||| || ||||| |||||||| ||||| || |||||||| ||||| || Sbjct: 794 ttgtatgcgttgacacaaagcttaaacttctcttcggccacggcctgtgatgagcctggg 735 Query: 400 tgcttgtcagggtgccacctcagagcagacgcgcggaaggctgttttgacatcatctagg 459 ||||||||||||||||||||||||||||| || ||||| || ||||||||| ||||||| Sbjct: 734 tgcttgtcagggtgccacctcagagcagatgcccggaaagcagttttgacagcatctaga 675 Query: 460 gttagtggaccac 472 ||||||||||||| Sbjct: 674 gttagtggaccac 662 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 611 acgatgaatctctgaagtgaaaaccctcccatgatgcatgggaccaggtaaaac 664 ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||| Sbjct: 535 acgatgaatctctgaagctaaaactctcccacgatatatgggaccaggtaaaac 482
>dbj|AK060617.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B11, full insert sequence Length = 1347 Score = 139 bits (70), Expect = 1e-29 Identities = 117/133 (87%) Strand = Plus / Minus Query: 340 ttgtatgcattgacgcanagcttgaacttctcctcggctaccgcctgtgaagagcccgga 399 |||||||| ||||| || ||||| |||||||| ||||| || |||||||| ||||| || Sbjct: 1021 ttgtatgcgttgacacaaagcttaaacttctcttcggccacggcctgtgatgagcctggg 962 Query: 400 tgcttgtcagggtgccacctcagagcagacgcgcggaaggctgttttgacatcatctagg 459 ||||||||||||||||||||||||||||| || ||||| || ||||||||| ||||||| Sbjct: 961 tgcttgtcagggtgccacctcagagcagatgcccggaaagcagttttgacagcatctaga 902 Query: 460 gttagtggaccac 472 ||||||||||||| Sbjct: 901 gttagtggaccac 889 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 611 acgatgaatctctgaagtgaaaaccctcccatgatgcatgggaccaggtaaaac 664 ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||| Sbjct: 762 acgatgaatctctgaagctaaaactctcccacgatatatgggaccaggtaaaac 709
>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12, complete sequence Length = 144670 Score = 69.9 bits (35), Expect = 1e-08 Identities = 50/55 (90%) Strand = Plus / Plus Query: 383 cctgtgaagagcccggatgcttgtcagggtgccacctcagagcagacgcgcggaa 437 ||||||| ||||| || ||||||||||||||||||||||||||||| || ||||| Sbjct: 100872 cctgtgatgagcctgggtgcttgtcagggtgccacctcagagcagatgcccggaa 100926 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Plus Query: 611 acgatgaatctctgaagtgaaaaccctcccatgatgcatgggaccaggtaaaac 664 ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||| Sbjct: 101207 acgatgaatctctgaagctaaaactctcccacgatatatgggaccaggtaaaac 101260 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Plus Query: 442 gttttgacatcatctagggttagtggaccac 472 ||||||||| ||||||| ||||||||||||| Sbjct: 101050 gttttgacagcatctagagttagtggaccac 101080
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 69.9 bits (35), Expect = 1e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 383 cctgtgaagagcccggatgcttgtcagggtgccacctcagagcagacgcgcggaa 437 ||||||| ||||| || ||||||||||||||||||||||||||||| || ||||| Sbjct: 123470 cctgtgatgagcctgggtgcttgtcagggtgccacctcagagcagatgcccggaa 123416 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Minus Query: 611 acgatgaatctctgaagtgaaaaccctcccatgatgcatgggaccaggtaaaa 663 |||||||||||| |||| ||||| |||||| ||| |||||||||||||||| Sbjct: 123135 acgatgaatctccgaagctaaaactctcccacgatatatgggaccaggtaaaa 123083 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 442 gttttgacatcatctagggttagtggaccac 472 ||||||||| ||||||| ||||||||||||| Sbjct: 123292 gttttgacagcatctagagttagtggaccac 123262
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 69.9 bits (35), Expect = 1e-08 Identities = 50/55 (90%) Strand = Plus / Plus Query: 383 cctgtgaagagcccggatgcttgtcagggtgccacctcagagcagacgcgcggaa 437 ||||||| ||||| || ||||||||||||||||||||||||||||| || ||||| Sbjct: 35164360 cctgtgatgagcctgggtgcttgtcagggtgccacctcagagcagatgcccggaa 35164414 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Plus Query: 611 acgatgaatctctgaagtgaaaaccctcccatgatgcatgggaccaggtaaaac 664 ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||| Sbjct: 35164695 acgatgaatctctgaagctaaaactctcccacgatatatgggaccaggtaaaac 35164748 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Plus Query: 442 gttttgacatcatctagggttagtggaccac 472 ||||||||| ||||||| ||||||||||||| Sbjct: 35164538 gttttgacagcatctagagttagtggaccac 35164568
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 69.9 bits (35), Expect = 1e-08 Identities = 50/55 (90%) Strand = Plus / Plus Query: 383 cctgtgaagagcccggatgcttgtcagggtgccacctcagagcagacgcgcggaa 437 ||||||| ||||| || ||||||||||||||||||||||||||||| || ||||| Sbjct: 33576 cctgtgatgagcctgggtgcttgtcagggtgccacctcagagcagatgcccggaa 33630 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 611 acgatgaatctctgaagtgaaaaccctcccatgatgcatgggaccaggtaaaa 663 |||||||||||| |||| ||||| |||||| ||| |||||||||||||||| Sbjct: 33911 acgatgaatctccgaagctaaaactctcccacgatatatgggaccaggtaaaa 33963 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Plus Query: 442 gttttgacatcatctagggttagtggaccac 472 ||||||||| ||||||| ||||||||||||| Sbjct: 33754 gttttgacagcatctagagttagtggaccac 33784
>emb|AL596165.1| Listeria innocua Clip11262 complete genome, segment 3/12 Length = 249050 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 244 caagagatggaacgattttctt 265 |||||||||||||||||||||| Sbjct: 229924 caagagatggaacgattttctt 229945
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 tgctgaagaaaggaacaaacaa 190 |||||||||||||||||||||| Sbjct: 7586688 tgctgaagaaaggaacaaacaa 7586667 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 534 gtcgtcgtcgtcgctttcgtcttc 557 ||||||||||||||| |||||||| Sbjct: 17352752 gtcgtcgtcgtcgctctcgtcttc 17352775
>dbj|AP003799.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1006_H01 Length = 113769 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 tgctgaagaaaggaacaaacaa 190 |||||||||||||||||||||| Sbjct: 113769 tgctgaagaaaggaacaaacaa 113748
>dbj|AP004751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0494D11 Length = 149198 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 tgctgaagaaaggaacaaacaa 190 |||||||||||||||||||||| Sbjct: 11883 tgctgaagaaaggaacaaacaa 11862
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 536 cgtcgtcgtcgctttcgtcttc 557 |||||||||||||||||||||| Sbjct: 2500797 cgtcgtcgtcgctttcgtcttc 2500818
>ref|XM_755121.1| Ustilago maydis 521 hypothetical protein (UM04067.1) partial mRNA Length = 1854 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 536 cgtcgtcgtcgctttcgtctt 556 ||||||||||||||||||||| Sbjct: 1267 cgtcgtcgtcgctttcgtctt 1247
>gb|AC021076.5| Homo sapiens chromosome 5 clone CTB-166J1, complete sequence Length = 92068 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 tacaacacaatctccttccat 113 ||||||||||||||||||||| Sbjct: 51090 tacaacacaatctccttccat 51070
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 533 tgtcgtcgtcgtcgctttcgtcttc 557 |||||||||||||||| |||||||| Sbjct: 9074246 tgtcgtcgtcgtcgctctcgtcttc 9074270 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 534 gtcgtcgtcgtcgctttcgtcttc 557 ||||||||||||||| |||||||| Sbjct: 10191891 gtcgtcgtcgtcgctctcgtcttc 10191868
>gb|AC011247.10| Homo sapiens BAC clone RP11-541E12 from 2, complete sequence Length = 208655 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 682 aaagatggtctcaaaaacttt 702 ||||||||||||||||||||| Sbjct: 98750 aaagatggtctcaaaaacttt 98730
>dbj|AP005767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0035G04 Length = 155636 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 533 tgtcgtcgtcgtcgctttcgtcttc 557 |||||||||||||||| |||||||| Sbjct: 45031 tgtcgtcgtcgtcgctctcgtcttc 45055
>dbj|AP005780.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0051H02 Length = 136520 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 533 tgtcgtcgtcgtcgctttcgtcttc 557 |||||||||||||||| |||||||| Sbjct: 117842 tgtcgtcgtcgtcgctctcgtcttc 117866
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 tcgtcgtcgctttcgtcttc 557 |||||||||||||||||||| Sbjct: 34630 tcgtcgtcgctttcgtcttc 34611
>ref|XM_959950.1| Neurospora crassa OR74A hypothetical protein (NCU07496.1) partial mRNA Length = 6423 Score = 40.1 bits (20), Expect = 9.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 531 ggtgtcgtcgtcgtcgctttcgtcttcgctctcgctttca 570 |||||||||||||||| | ||||| ||| |||||||||| Sbjct: 5877 ggtgtcgtcgtcgtcgttgtcgtcgtcgtcctcgctttca 5838
>ref|XM_327781.1| Neurospora crassa OR74A hypothetical protein (NCU07496.1) partial mRNA Length = 6423 Score = 40.1 bits (20), Expect = 9.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 531 ggtgtcgtcgtcgtcgctttcgtcttcgctctcgctttca 570 |||||||||||||||| | ||||| ||| |||||||||| Sbjct: 5877 ggtgtcgtcgtcgtcgttgtcgtcgtcgtcctcgctttca 5838
>gb|DQ226929.1| Boechera divaricarpa isolate SLW-E-G08 mRNA sequence Length = 645 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 656 aggtaaaaccctgggtgatg 675 |||||||||||||||||||| Sbjct: 35 aggtaaaaccctgggtgatg 54
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 534 gtcgtcgtcgtcgctttcgtcttc 557 ||||||||||||||| |||||||| Sbjct: 25442637 gtcgtcgtcgtcgctctcgtcttc 25442614
>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12 Length = 299350 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 cgtcgtcgctttcgtcttcg 558 |||||||||||||||||||| Sbjct: 184208 cgtcgtcgctttcgtcttcg 184189
>emb|AL596342.3| Human DNA sequence from clone RP11-198A7 on chromosome 1 Contains the 5' end of the RGS18 gene for regulator of G-protein signalling 18, complete sequence Length = 154968 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tgaaataaccatctggattt 39 |||||||||||||||||||| Sbjct: 103768 tgaaataaccatctggattt 103749
>emb|AL450322.17| Human DNA sequence from clone RP11-184A2 on chromosome 10 Contains the 3' end of the COPEB gene for core promoter element binding protein (GBF ZF9 Zf9 BCD1 CPBP KLF6) and two novel genes, complete sequence Length = 94162 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 617 aatctctgaagtgaaaaccc 636 |||||||||||||||||||| Sbjct: 40799 aatctctgaagtgaaaaccc 40780
>emb|AL133264.10| Human DNA sequence from clone RP3-369A17 on chromosome 6p22.1-22.3 Contains the 5' end of gene FLJ12619 (DKFZP564G182), a sigma 1 subunit adaptor-related protein complex 3 (AP3S1) (CLAPS3,Sigma3A) pseudogene and gene geminin (LOC51053). Contains 3 CpG islands, complete sequence Length = 83820 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 634 ccctcccatgatgcatggga 653 |||||||||||||||||||| Sbjct: 16771 ccctcccatgatgcatggga 16752
>ref|XM_963896.1| PREDICTED: Tribolium castaneum similar to CG13467-PA (LOC657436), mRNA Length = 705 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 534 gtcgtcgtcgtcgctttcgt 553 |||||||||||||||||||| Sbjct: 270 gtcgtcgtcgtcgctttcgt 251
>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence Length = 152828 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 534 gtcgtcgtcgtcgctttcgtcttc 557 ||||||||||||||| |||||||| Sbjct: 723 gtcgtcgtcgtcgctctcgtcttc 746
>gb|AY355337.1| Lilium longiflorum pollen-specific DnaJ-like protein mRNA, complete cds Length = 972 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 ggatgcttgtcagggtgcca 416 |||||||||||||||||||| Sbjct: 125 ggatgcttgtcagggtgcca 106
>dbj|AP004253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1116_C07 Length = 108208 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 agatgatatgaaataaccat 31 |||||||||||||||||||| Sbjct: 86908 agatgatatgaaataaccat 86889
>gb|AC174673.2| Mus musculus BAC clone RP24-435P4 from chromosome 7, complete sequence Length = 140309 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 atgaatctctgaagtgaaaa 633 |||||||||||||||||||| Sbjct: 91411 atgaatctctgaagtgaaaa 91392
>gb|DQ268507.1| Xenopus laevis complement C2 mRNA, partial cds Length = 2498 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 tggctctgttggctggctca 145 |||||||||||||||||||| Sbjct: 1757 tggctctgttggctggctca 1738
>gb|AC026225.5| Homo sapiens chromosome 10 clone RP11-78C6, complete sequence Length = 201173 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 634 ccctcccatgatgcatggga 653 |||||||||||||||||||| Sbjct: 73102 ccctcccatgatgcatggga 73083
>gb|AC098850.2| Homo sapiens chromosome 17, clone RP11-92B11, complete sequence Length = 178965 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 tattgctacatgttacaacacaat 103 ||||| |||||||||||||||||| Sbjct: 114878 tattgatacatgttacaacacaat 114855
>emb|BX510360.8| Zebrafish DNA sequence from clone DKEY-265A7 in linkage group 2, complete sequence Length = 213323 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gaaaacgaatgctgaagaaa 179 |||||||||||||||||||| Sbjct: 122010 gaaaacgaatgctgaagaaa 122029
>tpg|BK001589.1| TPA: TPA_exp: Homo sapiens chromosome 17 distal SMS-REP low-copy repeat, genomic sequence Length = 176482 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 tattgctacatgttacaacacaat 103 ||||| |||||||||||||||||| Sbjct: 50909 tattgatacatgttacaacacaat 50886
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 534 gtcgtcgtcgtcgctttcgtcttc 557 ||||||||||||||| |||||||| Sbjct: 16719113 gtcgtcgtcgtcgctctcgtcttc 16719136
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 534 gtcgtcgtcgtcgctttcgtcttc 557 ||||||||||||||| |||||||| Sbjct: 25533946 gtcgtcgtcgtcgctctcgtcttc 25533923
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 agatgatatgaaataaccat 31 |||||||||||||||||||| Sbjct: 11633112 agatgatatgaaataaccat 11633093
>gb|AC139667.5| Homo sapiens 3 BAC RP11-88B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135668 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 gctttcaactctttgtcttc 583 |||||||||||||||||||| Sbjct: 90352 gctttcaactctttgtcttc 90333
>gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complete sequence Length = 191540 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 aggtgggtgcagggaagagc 211 |||||||||||||||||||| Sbjct: 90213 aggtgggtgcagggaagagc 90232
>gb|AC126352.6| Homo sapiens chromosome 17, clone CTD-2509K7, complete sequence Length = 211403 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 tattgctacatgttacaacacaat 103 ||||| |||||||||||||||||| Sbjct: 128154 tattgatacatgttacaacacaat 128177
>gb|AC019195.10| Homo sapiens BAC clone RP11-355K7 from 2, complete sequence Length = 143823 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 tgaagaaaggaacaaacaac 191 |||||||||||||||||||| Sbjct: 57853 tgaagaaaggaacaaacaac 57872
>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence Length = 219471 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aggtgggtgcagggaagagc 211 |||||||||||||||||||| Sbjct: 9913 aggtgggtgcagggaagagc 9894
>gb|AC022596.9|AC022596 Homo sapiens chromosome 17, clone RP11-219A15, complete sequence Length = 192337 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 tattgctacatgttacaacacaat 103 ||||| |||||||||||||||||| Sbjct: 136185 tattgatacatgttacaacacaat 136208
>gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, complete sequence Length = 166299 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aggtgggtgcagggaagagc 211 |||||||||||||||||||| Sbjct: 18978 aggtgggtgcagggaagagc 18959
>gb|AC135600.3| Oryza sativa chromosome 3 BAC OSJNBb0047K21 genomic sequence, complete sequence Length = 117046 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 534 gtcgtcgtcgtcgctttcgtcttc 557 ||||||||||||||| |||||||| Sbjct: 92215 gtcgtcgtcgtcgctctcgtcttc 92238
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 atctccttccatgacgtcgg 121 |||||||||||||||||||| Sbjct: 7810484 atctccttccatgacgtcgg 7810503
>dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0551A11 Length = 132384 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 agatgatatgaaataaccat 31 |||||||||||||||||||| Sbjct: 72236 agatgatatgaaataaccat 72217
>dbj|AP005566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1253_E02 Length = 166645 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 534 gtcgtcgtcgtcgctttcgtcttc 557 ||||||||||||||| |||||||| Sbjct: 151569 gtcgtcgtcgtcgctctcgtcttc 151546
>dbj|AP004647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1267_E11 Length = 117073 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 534 gtcgtcgtcgtcgctttcgtcttc 557 ||||||||||||||| |||||||| Sbjct: 36376 gtcgtcgtcgtcgctctcgtcttc 36399
>gb|AC165150.3| Mus musculus BAC clone RP24-105I10 from chromosome 7, complete sequence Length = 210763 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 atgaatctctgaagtgaaaa 633 |||||||||||||||||||| Sbjct: 65248 atgaatctctgaagtgaaaa 65229
>gb|AC103623.13| Mus musculus chromosome 5, clone RP24-253A20, complete sequence Length = 170641 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ggagcttggctctgttggct 139 |||||||||||||||||||| Sbjct: 147598 ggagcttggctctgttggct 147579
>emb|AL445595.6|HS594J14 Homo sapiens chromosome 9 BAC RP11-594J14, complete sequence Length = 161567 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 692 tcaaaaactttttcaggatt 711 |||||||||||||||||||| Sbjct: 87557 tcaaaaactttttcaggatt 87538
>gb|AC174672.2| Mus musculus BAC clone RP24-566B4 from chromosome 7, complete sequence Length = 167219 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 atgaatctctgaagtgaaaa 633 |||||||||||||||||||| Sbjct: 119252 atgaatctctgaagtgaaaa 119271
>gb|AC140377.4| Mus musculus BAC clone RP24-84K14 from chromosome 7, complete sequence Length = 246043 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 atgaatctctgaagtgaaaa 633 |||||||||||||||||||| Sbjct: 243847 atgaatctctgaagtgaaaa 243828
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 534 gtcgtcgtcgtcgctttcgtcttc 557 ||||||||||||||| |||||||| Sbjct: 16672346 gtcgtcgtcgtcgctctcgtcttc 16672369
>emb|AL935068.5|CNS08CCK Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0088J13 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 116974 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 534 gtcgtcgtcgtcgctttcgtcttc 557 ||||||||||||||| |||||||| Sbjct: 66288 gtcgtcgtcgtcgctctcgtcttc 66265
>emb|AL645668.15| Mouse DNA sequence from clone RP23-32L21 on chromosome 4, complete sequence Length = 143213 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 gcttggctctgttggctggc 142 |||||||||||||||||||| Sbjct: 57820 gcttggctctgttggctggc 57801 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,122,318 Number of Sequences: 3902068 Number of extensions: 6122318 Number of successful extensions: 112710 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112098 Number of HSP's gapped (non-prelim): 612 length of query: 723 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 700 effective length of database: 17,143,297,704 effective search space: 12000308392800 effective search space used: 12000308392800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)