ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17p07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK070082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 4e-85
2ref|NM_188722.1| Oryza sativa (japonica cultivar-group), predic... 299 6e-78
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
4dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
5gb|AY110607.1| Zea mays CL3077_1 mRNA sequence 50 0.009
6ref|XM_465210.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.035
7dbj|AK061035.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.035
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
9dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
10dbj|AP004845.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
11dbj|AK100390.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.55
12emb|AL831715.7| Mouse DNA sequence from clone RP23-48E15 on chro... 44 0.55
13gb|BC094393.1| Mus musculus RIKEN cDNA 1110005A23 gene, mRNA (cD... 42 2.2
14ref|NM_025364.1| Mus musculus RIKEN cDNA 1110005A23 gene (111000... 42 2.2
15gb|AY593992.1| Homo sapiens upstream transcription factor 1 (USF... 42 2.2
16ref|XM_991289.1| PREDICTED: Mus musculus similar to cytokine ind... 42 2.2
17ref|XM_924323.2| PREDICTED: Mus musculus similar to cytokine ind... 42 2.2
18ref|XM_899946.2| PREDICTED: Mus musculus similar to cytokine ind... 42 2.2
19gb|AC132088.4| Mus musculus BAC clone RP24-410M8 from chromosome... 42 2.2
20gb|AC134830.2| Mus musculus BAC clone RP24-498G16 from chromosom... 42 2.2
21emb|AL591806.16| Human DNA sequence from clone RP11-544M22 on ch... 42 2.2
22emb|AL589847.6| Human DNA sequence from clone RP13-477D10 on chr... 42 2.2
23emb|AL359853.18| Human DNA sequence from clone RP11-12M5 on chro... 42 2.2
24dbj|AK146248.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length... 42 2.2
25gb|AC018691.10| Homo sapiens BAC clone RP11-547F10 from 2, compl... 42 2.2
26dbj|AK003453.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 42 2.2
27dbj|AK088266.1| Mus musculus 2 days neonate thymus thymic cells ... 42 2.2
28dbj|AK018773.1| Mus musculus adult male cerebellum cDNA, RIKEN f... 42 2.2
29emb|AL732501.8| Mouse DNA sequence from clone RP23-325I22 on chr... 42 2.2
30gb|BC027510.1| Mus musculus RIKEN cDNA 1110005A23 gene, mRNA (cD... 42 2.2
31emb|BX936462.20| Zebrafish DNA sequence from clone CH211-147O6 i... 42 2.2
32emb|BX470265.3| Zebrafish DNA sequence from clone CH211-87A14 in... 42 2.2
33gb|BC100070.1| Rattus norvegicus similar to RIKEN cDNA 1110005A2... 42 2.2
34dbj|AB017568.1| Homo sapiens USF1 gene, complete cds 42 2.2
35ref|NM_001033070.1| Rattus norvegicus similar to RIKEN cDNA 1110... 42 2.2
36gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 8.5
37gb|AY617967.1| Sterkiella histriomuscorum clone UGC1O0006_K18_F ... 40 8.5
38ref|XM_744626.1| Aspergillus fumigatus Af293 SIR2 family histone... 40 8.5
39gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 40 8.5
40emb|AL390997.10| Human DNA sequence from clone RP11-159G6 on chr... 40 8.5
41emb|AL354796.21| Human DNA sequence from clone RP11-145E17 on ch... 40 8.5
42emb|AL137839.6| Human DNA sequence from clone RP3-471C18 on chro... 40 8.5
43emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in... 40 8.5
44dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome 40 8.5
45gb|AC098719.3| Mus musculus clone RP23-2M3, complete sequence 40 8.5
46emb|AL954696.17| Zebrafish DNA sequence from clone CH211-234K4, ... 40 8.5
47gb|AC073063.12| Homo sapiens BAC clone RP11-136B3 from 7, comple... 40 8.5
48dbj|AK156103.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 8.5
49gb|AC079345.5| Homo sapiens BAC clone RP11-181C18 from 4, comple... 40 8.5
50gb|BC109532.1| Bos taurus cDNA clone MGC:133754 IMAGE:8056746, c... 40 8.5
51gb|AC150244.2| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 8.5
52gb|AC159643.2| Mus musculus BAC clone RP23-384H10 from chromosom... 40 8.5
53gb|AC116407.18| Homo sapiens chromosome 17, clone CTD-2095E4, co... 40 8.5
54gb|AC104088.6| Homo sapiens BAC clone RP11-744C22 from 2, comple... 40 8.5
55gb|AC146422.4| Pan troglodytes BAC clone RP43-27K9 from chromoso... 40 8.5
56gb|AC153655.4| Mus musculus BAC clone RP23-451K20 from chromosom... 40 8.5
57gb|AC026620.17| Homo sapiens chromosome 17, clone RP11-443G13, c... 40 8.5
58emb|BX004839.9| Zebrafish DNA sequence from clone DKEY-18A23 in ... 40 8.5
59gb|AC007894.2|F21H2 Arabidopsis thaliana chromosome 1 BAC F21H2 ... 40 8.5
60gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 8.5
61gb|AC140425.3| Mus musculus BAC clone RP24-97E12 from 1, complet... 40 8.5
62gb|AC147644.3| Gallus gallus BAC clone CH261-77K20 from chromoso... 40 8.5
63gb|AC149588.4| Mus musculus BAC clone RP23-366I10 from 15, compl... 40 8.5
64emb|CT030154.8| Mouse DNA sequence from clone RP23-387H3 on chro... 40 8.5
65emb|AL808126.10| Mouse DNA sequence from clone RP23-37B4 on chro... 40 8.5
66gb|AC172101.1| Medicago truncatula chromosome 7 BAC clone mth2-2... 40 8.5
67emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chro... 40 8.5
68emb|AL645856.5| Mouse DNA sequence from clone RP23-151N19 on chr... 40 8.5

>dbj|AK070082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E02, full
           insert sequence
          Length = 960

 Score =  323 bits (163), Expect = 4e-85
 Identities = 278/315 (88%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 302 atcaagcaggtgttgcttccttgctgctatctgccacattgacacctttgaagttcaata 361
           ||||||||||||||||| |||||||||| |||||  |||  ||||||||||||||||| |
Sbjct: 618 atcaagcaggtgttgctgccttgctgctttctgctccatgaacacctttgaagttcaaga 559

                                                                       
Query: 362 ttccagaaaggcctcgtcctttggcgaggcgctcaagttcagcaagcttcagcttgagct 421
           |||| ||||||||||||||||| |||||| |||||| |||||||||| |||| || || |
Sbjct: 558 ttcctgaaaggcctcgtcctttagcgaggtgctcaatttcagcaagcctcagtttaagat 499

                                                                       
Query: 422 cttctaaatctttagctaaaatctcttccttttgtctcagttcctcaagttcctgtttac 481
           | || |||||||||| |||| ||||||||  |||| ||| ||||||||||||||||||||
Sbjct: 498 cctccaaatctttagataaactctcttcccgttgtttcaattcctcaagttcctgtttac 439

                                                                       
Query: 482 gagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaagcag 541
           ||||||||||||| |||||||||||||| ||| | ||||||||||| |||||||||||||
Sbjct: 438 gagcttcctccttcctagcctctgaccttgcatttctttgcacctcaaaaattaaagcag 379

                                                                       
Query: 542 cgacagcaaccgaaaagatgaagccttctccaatgagatctgtagcaaacttgtactgcc 601
           | |||||||||||||| || |||||||||||||||||||| ||||| | ||||||| || 
Sbjct: 378 caacagcaaccgaaaaaataaagccttctccaatgagatccgtagc-agcttgtacagct 320

                          
Query: 602 ttctcctcatctaaa 616
           |||||||||| ||||
Sbjct: 319 ttctcctcatttaaa 305



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 156 tttgatccattcacccaaagaatgggcatggc 187
           |||||||||| |||| ||||||||||||||||
Sbjct: 762 tttgatccatacaccaaaagaatgggcatggc 731



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>ref|NM_188722.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 720

 Score =  299 bits (151), Expect = 6e-78
 Identities = 277/317 (87%), Gaps = 4/317 (1%)
 Strand = Plus / Minus

                                                                       
Query: 303 tcaagcaggtgttgcttccttgctgctatctgccacattgacacctttgaagttcaatat 362
           |||||||||||||||| |||||||||| |||||  |||  ||||||||||||||||| ||
Sbjct: 720 tcaagcaggtgttgctgccttgctgctttctgctccatgaacacctttgaagttcaagat 661

                                                                       
Query: 363 tccagaaaggcctcgtcctttggcgaggcgctcaagttcagcaagcttcagcttgagctc 422
           ||| ||||||||||||||||| |||||| |||||| |||||||||| |||| || || ||
Sbjct: 660 tcctgaaaggcctcgtcctttagcgaggtgctcaatttcagcaagcctcagtttaagatc 601

                                                                       
Query: 423 ttctaaatctttagctaaaatctcttccttttgtctcagttcc---tcaagttcctgttt 479
            || |||||||||| |||| ||||||||  |||| ||| ||||   ||||||||||||||
Sbjct: 600 ctccaaatctttagataaactctcttcccgttgtttcaattccacctcaagttcctgttt 541

                                                                       
Query: 480 acgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaagc 539
           ||||||||||||||| |||||||||||||| ||| | ||||||||||| |||||||||||
Sbjct: 540 acgagcttcctccttcctagcctctgaccttgcatttctttgcacctcaaaaattaaagc 481

                                                                       
Query: 540 agcgacagcaaccgaaaagatgaagccttctccaatgagatctgtagcaaacttgtactg 599
           ||| |||||||||||||| || |||||||||||||||||||| ||||| | ||||||| |
Sbjct: 480 agcaacagcaaccgaaaaaataaagccttctccaatgagatccgtagc-agcttgtacag 422

                            
Query: 600 ccttctcctcatctaaa 616
           | |||||||||| ||||
Sbjct: 421 ctttctcctcatttaaa 405



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  145 bits (73), Expect = 2e-31
 Identities = 130/149 (87%)
 Strand = Plus / Minus

                                                                           
Query: 302     atcaagcaggtgttgcttccttgctgctatctgccacattgacacctttgaagttcaata 361
               ||||||||||||||||| |||||||||| |||||  |||  ||||||||||||||||| |
Sbjct: 7854418 atcaagcaggtgttgctgccttgctgctttctgctccatgaacacctttgaagttcaaga 7854359

                                                                           
Query: 362     ttccagaaaggcctcgtcctttggcgaggcgctcaagttcagcaagcttcagcttgagct 421
               |||| ||||||||||||||||| |||||| |||||| |||||||||| |||| || || |
Sbjct: 7854358 ttcctgaaaggcctcgtcctttagcgaggtgctcaatttcagcaagcctcagtttaagat 7854299

                                            
Query: 422     cttctaaatctttagctaaaatctcttcc 450
               | || |||||||||| |||| ||||||||
Sbjct: 7854298 cctccaaatctttagataaactctcttcc 7854270



 Score =  131 bits (66), Expect = 3e-27
 Identities = 87/94 (92%)
 Strand = Plus / Minus

                                                                           
Query: 464     cctcaagttcctgtttacgagcttcctcctttctagcctctgacctagcactcctttgca 523
               ||||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||||
Sbjct: 7853151 cctcaagttcctgtttacgagcttcctccttcctagcctctgaccttgcatttctttgca 7853092

                                                 
Query: 524     cctcgaaaattaaagcagcgacagcaaccgaaaa 557
               |||| |||||||||||||| ||||||||| ||||
Sbjct: 7853091 cctcaaaaattaaagcagcaacagcaacctaaaa 7853058



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 59/67 (88%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                           
Query: 550     accgaaaagatgaagccttctccaatgagatctgtagcaaacttgtactgccttctcctc 609
               |||||||| || |||||||||||||||||||| ||||| | ||||||| || ||||||||
Sbjct: 7852906 accgaaaaaataaagccttctccaatgagatccgtagc-agcttgtacagctttctcctc 7852848

                      
Query: 610     atctaaa 616
               || ||||
Sbjct: 7852847 atttaaa 7852841



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 156     tttgatccattcacccaaagaatgggcatggc 187
               |||||||||| |||| ||||||||||||||||
Sbjct: 7854562 tttgatccatacaccaaaagaatgggcatggc 7854531



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>dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1066G12
          Length = 136263

 Score =  145 bits (73), Expect = 2e-31
 Identities = 130/149 (87%)
 Strand = Plus / Minus

                                                                         
Query: 302   atcaagcaggtgttgcttccttgctgctatctgccacattgacacctttgaagttcaata 361
             ||||||||||||||||| |||||||||| |||||  |||  ||||||||||||||||| |
Sbjct: 49364 atcaagcaggtgttgctgccttgctgctttctgctccatgaacacctttgaagttcaaga 49305

                                                                         
Query: 362   ttccagaaaggcctcgtcctttggcgaggcgctcaagttcagcaagcttcagcttgagct 421
             |||| ||||||||||||||||| |||||| |||||| |||||||||| |||| || || |
Sbjct: 49304 ttcctgaaaggcctcgtcctttagcgaggtgctcaatttcagcaagcctcagtttaagat 49245

                                          
Query: 422   cttctaaatctttagctaaaatctcttcc 450
             | || |||||||||| |||| ||||||||
Sbjct: 49244 cctccaaatctttagataaactctcttcc 49216



 Score =  131 bits (66), Expect = 3e-27
 Identities = 87/94 (92%)
 Strand = Plus / Minus

                                                                         
Query: 464   cctcaagttcctgtttacgagcttcctcctttctagcctctgacctagcactcctttgca 523
             ||||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||||
Sbjct: 48097 cctcaagttcctgtttacgagcttcctccttcctagcctctgaccttgcatttctttgca 48038

                                               
Query: 524   cctcgaaaattaaagcagcgacagcaaccgaaaa 557
             |||| |||||||||||||| ||||||||| ||||
Sbjct: 48037 cctcaaaaattaaagcagcaacagcaacctaaaa 48004



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 59/67 (88%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                         
Query: 550   accgaaaagatgaagccttctccaatgagatctgtagcaaacttgtactgccttctcctc 609
             |||||||| || |||||||||||||||||||| ||||| | ||||||| || ||||||||
Sbjct: 47852 accgaaaaaataaagccttctccaatgagatccgtagc-agcttgtacagctttctcctc 47794

                    
Query: 610   atctaaa 616
             || ||||
Sbjct: 47793 atttaaa 47787



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 156   tttgatccattcacccaaagaatgggcatggc 187
             |||||||||| |||| ||||||||||||||||
Sbjct: 49508 tttgatccatacaccaaaagaatgggcatggc 49477



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>gb|AY110607.1| Zea mays CL3077_1 mRNA sequence
          Length = 920

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 487 tcctcctttctagcctctgacctagcactcctttgcacctc 527
           ||||| ||||| || |||||||||||||| |||||||||||
Sbjct: 410 tcctcttttctggcttctgacctagcacttctttgcacctc 450



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>ref|XM_465210.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1138

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                       
Query: 479 tacgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaag 538
           ||||||| ||||| ||||  ||||| ||||| || || ||||||||||| || |||| ||
Sbjct: 548 tacgagcctcctcttttcgggcctcggaccttgcgcttctttgcacctcaaagattacag 489

                           
Query: 539 cagcgacagcaaccga 554
           ||||  ||||||||||
Sbjct: 488 cagccccagcaaccga 473



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>dbj|AK061035.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-A09, full
           insert sequence
          Length = 1138

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                       
Query: 479 tacgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaag 538
           ||||||| ||||| ||||  ||||| ||||| || || ||||||||||| || |||| ||
Sbjct: 548 tacgagcctcctcttttcgggcctcggaccttgcgcttctttgcacctcaaagattacag 489

                           
Query: 539 cagcgacagcaaccga 554
           ||||  ||||||||||
Sbjct: 488 cagccccagcaaccga 473



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                            
Query: 479      tacgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaag 538
                ||||||| ||||| ||||  ||||| ||||| || || ||||||||||| || |||| ||
Sbjct: 12320888 tacgagcctcctcttttcgggcctcggaccttgcgcttctttgcacctcaaagattacag 12320829

                              
Query: 539      cagcgacagcaacc 552
                ||||  ||||||||
Sbjct: 12320828 cagccccagcaacc 12320815



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>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0705A04
          Length = 182468

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                        
Query: 479  tacgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaag 538
            ||||||| ||||| ||||  ||||| ||||| || || ||||||||||| || |||| ||
Sbjct: 1025 tacgagcctcctcttttcgggcctcggaccttgcgcttctttgcacctcaaagattacag 966

                          
Query: 539  cagcgacagcaacc 552
            ||||  ||||||||
Sbjct: 965  cagccccagcaacc 952



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>dbj|AP004845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1233_A01
          Length = 98378

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                         
Query: 479   tacgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaag 538
             ||||||| ||||| ||||  ||||| ||||| || || ||||||||||| || |||| ||
Sbjct: 82913 tacgagcctcctcttttcgggcctcggaccttgcgcttctttgcacctcaaagattacag 82854

                           
Query: 539   cagcgacagcaacc 552
             ||||  ||||||||
Sbjct: 82853 cagccccagcaacc 82840



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>dbj|AK100390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085P21, full
           insert sequence
          Length = 2682

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                       
Query: 479 tacgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaag 538
           ||||||| ||||| ||||  ||||| ||||| || || ||||||||||| || |||| ||
Sbjct: 512 tacgagcctcctcttttcgggcctcggaccttgcgcttctttgcacctcaaagattacag 453

                         
Query: 539 cagcgacagcaacc 552
           ||||  ||||||||
Sbjct: 452 cagccccagcaacc 439



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>emb|AL831715.7| Mouse DNA sequence from clone RP23-48E15 on chromosome X, complete
              sequence
          Length = 163675

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 36     agaatacactcatctttatatcttgt 61
              ||||||||||||||||||||| ||||
Sbjct: 151918 agaatacactcatctttatattttgt 151943



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>gb|BC094393.1| Mus musculus RIKEN cDNA 1110005A23 gene, mRNA (cDNA clone
           IMAGE:30550736), with apparent retained intron
          Length = 1097

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 397 agttcagcaagcttcagcttg 417
           |||||||||||||||||||||
Sbjct: 51  agttcagcaagcttcagcttg 31



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>ref|NM_025364.1| Mus musculus RIKEN cDNA 1110005A23 gene (1110005A23Rik), mRNA
          Length = 893

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 397 agttcagcaagcttcagcttg 417
           |||||||||||||||||||||
Sbjct: 64  agttcagcaagcttcagcttg 44



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>gb|AY593992.1| Homo sapiens upstream transcription factor 1 (USF1) gene, complete
            cds
          Length = 9549

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 553  gaaaagatgaagccttctcca 573
            |||||||||||||||||||||
Sbjct: 6764 gaaaagatgaagccttctcca 6744



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>ref|XM_991289.1| PREDICTED: Mus musculus similar to cytokine induced protein 29 kDa
           (LOC636633), mRNA
          Length = 866

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 397 agttcagcaagcttcagcttg 417
           |||||||||||||||||||||
Sbjct: 83  agttcagcaagcttcagcttg 63



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>ref|XM_924323.2| PREDICTED: Mus musculus similar to cytokine induced protein 29 kDa,
           transcript variant 2 (LOC636633), mRNA
          Length = 866

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 397 agttcagcaagcttcagcttg 417
           |||||||||||||||||||||
Sbjct: 83  agttcagcaagcttcagcttg 63



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>ref|XM_899946.2| PREDICTED: Mus musculus similar to cytokine induced protein 29 kDa,
           transcript variant 2 (LOC625193), mRNA
          Length = 866

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 397 agttcagcaagcttcagcttg 417
           |||||||||||||||||||||
Sbjct: 83  agttcagcaagcttcagcttg 63



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>gb|AC132088.4| Mus musculus BAC clone RP24-410M8 from chromosome 19, complete sequence
          Length = 159681

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 397   agttcagcaagcttcagcttg 417
             |||||||||||||||||||||
Sbjct: 30718 agttcagcaagcttcagcttg 30738



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>gb|AC134830.2| Mus musculus BAC clone RP24-498G16 from chromosome 19, complete
             sequence
          Length = 155666

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 397   agttcagcaagcttcagcttg 417
             |||||||||||||||||||||
Sbjct: 27141 agttcagcaagcttcagcttg 27121



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>emb|AL591806.16| Human DNA sequence from clone RP11-544M22 on chromosome 1 Contains the
             3' end of a novel gene, the 5' end of the ITLN2 gene for
             intelectin 2, the F11R gene for F11 receptor, the gene for
             KAT protein, the USF1 gene for upstream transcription
             factor 1, the gene for a novel protein, the PVRL4 gene for
             poliovirus receptor-related 4, a novel gene, the gene for
             a novel protein (MGC33338), the PFDN2 gene for prefoldin
             2, the NIT1 gene for nitrilase 1 and the DEDD gene for
             death effector domain containing, complete sequence
          Length = 200822

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 553   gaaaagatgaagccttctcca 573
             |||||||||||||||||||||
Sbjct: 94102 gaaaagatgaagccttctcca 94122



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>emb|AL589847.6| Human DNA sequence from clone RP13-477D10 on chromosome X, complete
             sequence
          Length = 103196

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 501   ctctgacctagcactcctttg 521
             |||||||||||||||||||||
Sbjct: 85118 ctctgacctagcactcctttg 85098



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>emb|AL359853.18| Human DNA sequence from clone RP11-12M5 on chromosome 1 Contains five
             novel genes and a CpG island, complete sequence
          Length = 173031

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   ctattatttcatcaggatgtc 133
             |||||||||||||||||||||
Sbjct: 76847 ctattatttcatcaggatgtc 76827



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>dbj|AK146248.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library,
           clone:I730042C22 product:Nuclear protein Hcc-1, full
           insert sequence
          Length = 919

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 397 agttcagcaagcttcagcttg 417
           |||||||||||||||||||||
Sbjct: 90  agttcagcaagcttcagcttg 70



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>gb|AC018691.10| Homo sapiens BAC clone RP11-547F10 from 2, complete sequence
          Length = 187298

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 554   aaaagatgaagccttctccaa 574
             |||||||||||||||||||||
Sbjct: 63776 aaaagatgaagccttctccaa 63796



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>dbj|AK003453.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
           enriched library, clone:1110005A23 product:hypothetical
           SAP domain containing protein, full insert sequence
          Length = 893

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 397 agttcagcaagcttcagcttg 417
           |||||||||||||||||||||
Sbjct: 64  agttcagcaagcttcagcttg 44



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>dbj|AK088266.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430008O03
           product:NUCLEAR PROTEIN HCC-1 homolog [Mus musculus],
           full insert sequence
          Length = 890

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 397 agttcagcaagcttcagcttg 417
           |||||||||||||||||||||
Sbjct: 61  agttcagcaagcttcagcttg 41



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>dbj|AK018773.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched
           library, clone:1500016M05 product:NUCLEAR PROTEIN HCC-1
           homolog [Mus musculus], full insert sequence
          Length = 620

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 397 agttcagcaagcttcagcttg 417
           |||||||||||||||||||||
Sbjct: 75  agttcagcaagcttcagcttg 55



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>emb|AL732501.8| Mouse DNA sequence from clone RP23-325I22 on chromosome X, complete
              sequence
          Length = 206856

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 189    atagtatcaaagaactgtgacagaa 213
              ||||||||||| |||||||||||||
Sbjct: 193329 atagtatcaaaaaactgtgacagaa 193353



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>gb|BC027510.1| Mus musculus RIKEN cDNA 1110005A23 gene, mRNA (cDNA clone MGC:41057
           IMAGE:1382354), complete cds
          Length = 908

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 397 agttcagcaagcttcagcttg 417
           |||||||||||||||||||||
Sbjct: 51  agttcagcaagcttcagcttg 31



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>emb|BX936462.20| Zebrafish DNA sequence from clone CH211-147O6 in linkage group 20,
              complete sequence
          Length = 196432

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 574    atgagatctgtagcaaacttgtact 598
              ||||||||||||||||||| |||||
Sbjct: 150559 atgagatctgtagcaaactagtact 150535



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>emb|BX470265.3| Zebrafish DNA sequence from clone CH211-87A14 in linkage group 20,
             complete sequence
          Length = 166824

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 574   atgagatctgtagcaaacttgtact 598
             ||||||||||||||||||| |||||
Sbjct: 70485 atgagatctgtagcaaactagtact 70509



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>gb|BC100070.1| Rattus norvegicus similar to RIKEN cDNA 1110005A23, mRNA (cDNA
           clone MGC:112623 IMAGE:7385206), complete cds
          Length = 1244

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 397 agttcagcaagcttcagcttg 417
           |||||||||||||||||||||
Sbjct: 205 agttcagcaagcttcagcttg 185



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>dbj|AB017568.1| Homo sapiens USF1 gene, complete cds
          Length = 9724

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 553  gaaaagatgaagccttctcca 573
            |||||||||||||||||||||
Sbjct: 8502 gaaaagatgaagccttctcca 8482



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>ref|NM_001033070.1| Rattus norvegicus similar to RIKEN cDNA 1110005A23 (RGD1305692),
           mRNA
          Length = 1244

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 397 agttcagcaagcttcagcttg 417
           |||||||||||||||||||||
Sbjct: 205 agttcagcaagcttcagcttg 185



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 379    cctttggcgaggcgctcaag 398
              ||||||||||||||||||||
Sbjct: 988440 cctttggcgaggcgctcaag 988421



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>gb|AY617967.1| Sterkiella histriomuscorum clone UGC1O0006_K18_F genomic sequence
          Length = 739

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 aagcttcagcttgagctctt 424
           ||||||||||||||||||||
Sbjct: 485 aagcttcagcttgagctctt 504



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>ref|XM_744626.1| Aspergillus fumigatus Af293 SIR2 family histone deacetylase
           (Afu2g05900) partial mRNA
          Length = 1278

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 459 cagttcctcaagttcctgtt 478
           ||||||||||||||||||||
Sbjct: 846 cagttcctcaagttcctgtt 827



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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 318     ttccttgctgctatctgcca 337
               ||||||||||||||||||||
Sbjct: 2412049 ttccttgctgctatctgcca 2412068



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>emb|AL390997.10| Human DNA sequence from clone RP11-159G6 on chromosome Xq21.33-23,
             complete sequence
          Length = 112328

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   ctcttctaaatctttagcta 439
             ||||||||||||||||||||
Sbjct: 81612 ctcttctaaatctttagcta 81593



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>emb|AL354796.21| Human DNA sequence from clone RP11-145E17 on chromosome 9 Contains the
              5'end of a novel gene (FLJ00318), a novel gene and two CpG
              islands, complete sequence
          Length = 156466

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 593    tgtactgccttctcctcatc 612
              ||||||||||||||||||||
Sbjct: 146703 tgtactgccttctcctcatc 146684



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>emb|AL137839.6| Human DNA sequence from clone RP3-471C18 on chromosome 6 Contains the
             3' end of two novel genes, complete sequence
          Length = 108793

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   ctaaaatctcttccttttgt 456
             ||||||||||||||||||||
Sbjct: 29273 ctaaaatctcttccttttgt 29254



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>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
             complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   cccccttctcctgaccaaag 289
             ||||||||||||||||||||
Sbjct: 12188 cccccttctcctgaccaaag 12169



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>dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome
          Length = 1166239

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 430     tctttagctaaaatctcttc 449
               ||||||||||||||||||||
Sbjct: 1000739 tctttagctaaaatctcttc 1000758



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>gb|AC098719.3| Mus musculus clone RP23-2M3, complete sequence
          Length = 219626

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   acagaagaaaccaattagcc 227
             ||||||||||||||||||||
Sbjct: 14879 acagaagaaaccaattagcc 14860



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>emb|AL954696.17| Zebrafish DNA sequence from clone CH211-234K4, complete sequence
          Length = 149858

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    caatcacactattatttcat 124
              ||||||||||||||||||||
Sbjct: 141997 caatcacactattatttcat 141978



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>gb|AC073063.12| Homo sapiens BAC clone RP11-136B3 from 7, complete sequence
          Length = 84113

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   agttcagcaagcttcagctt 416
             ||||||||||||||||||||
Sbjct: 72997 agttcagcaagcttcagctt 72978



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>dbj|AK156103.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830008B03 product:unclassifiable, full
           insert sequence
          Length = 2945

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 402 agcaagcttcagcttgagctcttc 425
           |||| |||||||||||||||||||
Sbjct: 611 agcatgcttcagcttgagctcttc 634



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>gb|AC079345.5| Homo sapiens BAC clone RP11-181C18 from 4, complete sequence
          Length = 171325

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 442   atctcttccttttgtctcag 461
             ||||||||||||||||||||
Sbjct: 72070 atctcttccttttgtctcag 72089



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>gb|BC109532.1| Bos taurus cDNA clone MGC:133754 IMAGE:8056746, complete cds
          Length = 912

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 agttcagcaagcttcagctt 416
           ||||||||||||||||||||
Sbjct: 61  agttcagcaagcttcagctt 42



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>gb|AC150244.2| Medicago truncatula chromosome 7 BAC clone mth2-180p14, complete
            sequence
          Length = 115289

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 454  tgtctcagttcctcaagttc 473
            ||||||||||||||||||||
Sbjct: 8286 tgtctcagttcctcaagttc 8305



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>gb|AC159643.2| Mus musculus BAC clone RP23-384H10 from chromosome 12, complete sequence
          Length = 200939

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    agaagaaaccaattagccaa 229
              ||||||||||||||||||||
Sbjct: 130601 agaagaaaccaattagccaa 130620



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>gb|AC116407.18| Homo sapiens chromosome 17, clone CTD-2095E4, complete sequence
          Length = 104176

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   agtaagaatacactcatctt 51
            ||||||||||||||||||||
Sbjct: 3091 agtaagaatacactcatctt 3072



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>gb|AC104088.6| Homo sapiens BAC clone RP11-744C22 from 2, complete sequence
          Length = 158746

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    agaactgtgacagaagaaac 218
              ||||||||||||||||||||
Sbjct: 110230 agaactgtgacagaagaaac 110211



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>gb|AC146422.4| Pan troglodytes BAC clone RP43-27K9 from chromosome 7, complete sequence
          Length = 189507

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    agttcagcaagcttcagctt 416
              ||||||||||||||||||||
Sbjct: 134804 agttcagcaagcttcagctt 134823



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>gb|AC153655.4| Mus musculus BAC clone RP23-451K20 from chromosome 1, complete sequence
          Length = 167208

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     ctttatatcttgttctgtgg 68
              ||||||||||||||||||||
Sbjct: 121466 ctttatatcttgttctgtgg 121447



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>gb|AC026620.17| Homo sapiens chromosome 17, clone RP11-443G13, complete sequence
          Length = 156300

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    agtaagaatacactcatctt 51
             ||||||||||||||||||||
Sbjct: 47650 agtaagaatacactcatctt 47669



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>emb|BX004839.9| Zebrafish DNA sequence from clone DKEY-18A23 in linkage group 6,
            complete sequence
          Length = 223000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  aggatgtctaatggatcaac 145
            ||||||||||||||||||||
Sbjct: 1532 aggatgtctaatggatcaac 1513



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>gb|AC007894.2|F21H2 Arabidopsis thaliana chromosome 1 BAC F21H2 sequence, complete sequence
          Length = 88512

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   tcacacaatcacactattat 119
             ||||||||||||||||||||
Sbjct: 51436 tcacacaatcacactattat 51455



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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    ttccagaaaggcctcgtcct 381
              ||||||||||||||||||||
Sbjct: 616017 ttccagaaaggcctcgtcct 615998



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>gb|AC140425.3| Mus musculus BAC clone RP24-97E12 from 1, complete sequence
          Length = 187415

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    ctttatatcttgttctgtgg 68
             ||||||||||||||||||||
Sbjct: 43576 ctttatatcttgttctgtgg 43557



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>gb|AC147644.3| Gallus gallus BAC clone CH261-77K20 from chromosome unknown, complete
             sequence
          Length = 191888

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 449   ccttttgtctcagttcctcaagtt 472
             |||||| |||||||||||||||||
Sbjct: 94693 ccttttctctcagttcctcaagtt 94716



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>gb|AC149588.4| Mus musculus BAC clone RP23-366I10 from 15, complete sequence
          Length = 200656

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   acagaagaaaccaattagcc 227
             ||||||||||||||||||||
Sbjct: 23692 acagaagaaaccaattagcc 23711



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>emb|CT030154.8| Mouse DNA sequence from clone RP23-387H3 on chromosome 12, complete
              sequence
          Length = 213294

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    agaagaaaccaattagccaa 229
              ||||||||||||||||||||
Sbjct: 164497 agaagaaaccaattagccaa 164478



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>emb|AL808126.10| Mouse DNA sequence from clone RP23-37B4 on chromosome 2, complete
             sequence
          Length = 94874

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   tcaagcaggtgttgcttcct 322
             ||||||||||||||||||||
Sbjct: 85686 tcaagcaggtgttgcttcct 85705



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>gb|AC172101.1| Medicago truncatula chromosome 7 BAC clone mth2-29f3, complete sequence
          Length = 88313

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   tgtctcagttcctcaagttc 473
             ||||||||||||||||||||
Sbjct: 86458 tgtctcagttcctcaagttc 86477



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>emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chromosome X, complete
              sequence
          Length = 195413

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    tttcatcaggatgtctaatg 138
              ||||||||||||||||||||
Sbjct: 120066 tttcatcaggatgtctaatg 120047



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>emb|AL645856.5| Mouse DNA sequence from clone RP23-151N19 on chromosome 11, complete
              sequence
          Length = 116300

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 402    agcaagcttcagcttgagctcttc 425
              |||| |||||||||||||||||||
Sbjct: 107498 agcatgcttcagcttgagctcttc 107521


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,283,510
Number of Sequences: 3902068
Number of extensions: 6283510
Number of successful extensions: 159531
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159276
Number of HSP's gapped (non-prelim): 254
length of query: 627
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 604
effective length of database: 17,143,297,704
effective search space: 10354551813216
effective search space used: 10354551813216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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