Clone Name | rbasd17p07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK070082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E02, full insert sequence Length = 960 Score = 323 bits (163), Expect = 4e-85 Identities = 278/315 (88%), Gaps = 1/315 (0%) Strand = Plus / Minus Query: 302 atcaagcaggtgttgcttccttgctgctatctgccacattgacacctttgaagttcaata 361 ||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||| | Sbjct: 618 atcaagcaggtgttgctgccttgctgctttctgctccatgaacacctttgaagttcaaga 559 Query: 362 ttccagaaaggcctcgtcctttggcgaggcgctcaagttcagcaagcttcagcttgagct 421 |||| ||||||||||||||||| |||||| |||||| |||||||||| |||| || || | Sbjct: 558 ttcctgaaaggcctcgtcctttagcgaggtgctcaatttcagcaagcctcagtttaagat 499 Query: 422 cttctaaatctttagctaaaatctcttccttttgtctcagttcctcaagttcctgtttac 481 | || |||||||||| |||| |||||||| |||| ||| |||||||||||||||||||| Sbjct: 498 cctccaaatctttagataaactctcttcccgttgtttcaattcctcaagttcctgtttac 439 Query: 482 gagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaagcag 541 ||||||||||||| |||||||||||||| ||| | ||||||||||| ||||||||||||| Sbjct: 438 gagcttcctccttcctagcctctgaccttgcatttctttgcacctcaaaaattaaagcag 379 Query: 542 cgacagcaaccgaaaagatgaagccttctccaatgagatctgtagcaaacttgtactgcc 601 | |||||||||||||| || |||||||||||||||||||| ||||| | ||||||| || Sbjct: 378 caacagcaaccgaaaaaataaagccttctccaatgagatccgtagc-agcttgtacagct 320 Query: 602 ttctcctcatctaaa 616 |||||||||| |||| Sbjct: 319 ttctcctcatttaaa 305 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 156 tttgatccattcacccaaagaatgggcatggc 187 |||||||||| |||| |||||||||||||||| Sbjct: 762 tttgatccatacaccaaaagaatgggcatggc 731
>ref|NM_188722.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 720 Score = 299 bits (151), Expect = 6e-78 Identities = 277/317 (87%), Gaps = 4/317 (1%) Strand = Plus / Minus Query: 303 tcaagcaggtgttgcttccttgctgctatctgccacattgacacctttgaagttcaatat 362 |||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||| || Sbjct: 720 tcaagcaggtgttgctgccttgctgctttctgctccatgaacacctttgaagttcaagat 661 Query: 363 tccagaaaggcctcgtcctttggcgaggcgctcaagttcagcaagcttcagcttgagctc 422 ||| ||||||||||||||||| |||||| |||||| |||||||||| |||| || || || Sbjct: 660 tcctgaaaggcctcgtcctttagcgaggtgctcaatttcagcaagcctcagtttaagatc 601 Query: 423 ttctaaatctttagctaaaatctcttccttttgtctcagttcc---tcaagttcctgttt 479 || |||||||||| |||| |||||||| |||| ||| |||| |||||||||||||| Sbjct: 600 ctccaaatctttagataaactctcttcccgttgtttcaattccacctcaagttcctgttt 541 Query: 480 acgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaagc 539 ||||||||||||||| |||||||||||||| ||| | ||||||||||| ||||||||||| Sbjct: 540 acgagcttcctccttcctagcctctgaccttgcatttctttgcacctcaaaaattaaagc 481 Query: 540 agcgacagcaaccgaaaagatgaagccttctccaatgagatctgtagcaaacttgtactg 599 ||| |||||||||||||| || |||||||||||||||||||| ||||| | ||||||| | Sbjct: 480 agcaacagcaaccgaaaaaataaagccttctccaatgagatccgtagc-agcttgtacag 422 Query: 600 ccttctcctcatctaaa 616 | |||||||||| |||| Sbjct: 421 ctttctcctcatttaaa 405
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 145 bits (73), Expect = 2e-31 Identities = 130/149 (87%) Strand = Plus / Minus Query: 302 atcaagcaggtgttgcttccttgctgctatctgccacattgacacctttgaagttcaata 361 ||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||| | Sbjct: 7854418 atcaagcaggtgttgctgccttgctgctttctgctccatgaacacctttgaagttcaaga 7854359 Query: 362 ttccagaaaggcctcgtcctttggcgaggcgctcaagttcagcaagcttcagcttgagct 421 |||| ||||||||||||||||| |||||| |||||| |||||||||| |||| || || | Sbjct: 7854358 ttcctgaaaggcctcgtcctttagcgaggtgctcaatttcagcaagcctcagtttaagat 7854299 Query: 422 cttctaaatctttagctaaaatctcttcc 450 | || |||||||||| |||| |||||||| Sbjct: 7854298 cctccaaatctttagataaactctcttcc 7854270 Score = 131 bits (66), Expect = 3e-27 Identities = 87/94 (92%) Strand = Plus / Minus Query: 464 cctcaagttcctgtttacgagcttcctcctttctagcctctgacctagcactcctttgca 523 ||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||| Sbjct: 7853151 cctcaagttcctgtttacgagcttcctccttcctagcctctgaccttgcatttctttgca 7853092 Query: 524 cctcgaaaattaaagcagcgacagcaaccgaaaa 557 |||| |||||||||||||| ||||||||| |||| Sbjct: 7853091 cctcaaaaattaaagcagcaacagcaacctaaaa 7853058 Score = 61.9 bits (31), Expect = 2e-06 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand = Plus / Minus Query: 550 accgaaaagatgaagccttctccaatgagatctgtagcaaacttgtactgccttctcctc 609 |||||||| || |||||||||||||||||||| ||||| | ||||||| || |||||||| Sbjct: 7852906 accgaaaaaataaagccttctccaatgagatccgtagc-agcttgtacagctttctcctc 7852848 Query: 610 atctaaa 616 || |||| Sbjct: 7852847 atttaaa 7852841 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 156 tttgatccattcacccaaagaatgggcatggc 187 |||||||||| |||| |||||||||||||||| Sbjct: 7854562 tttgatccatacaccaaaagaatgggcatggc 7854531
>dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1066G12 Length = 136263 Score = 145 bits (73), Expect = 2e-31 Identities = 130/149 (87%) Strand = Plus / Minus Query: 302 atcaagcaggtgttgcttccttgctgctatctgccacattgacacctttgaagttcaata 361 ||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||| | Sbjct: 49364 atcaagcaggtgttgctgccttgctgctttctgctccatgaacacctttgaagttcaaga 49305 Query: 362 ttccagaaaggcctcgtcctttggcgaggcgctcaagttcagcaagcttcagcttgagct 421 |||| ||||||||||||||||| |||||| |||||| |||||||||| |||| || || | Sbjct: 49304 ttcctgaaaggcctcgtcctttagcgaggtgctcaatttcagcaagcctcagtttaagat 49245 Query: 422 cttctaaatctttagctaaaatctcttcc 450 | || |||||||||| |||| |||||||| Sbjct: 49244 cctccaaatctttagataaactctcttcc 49216 Score = 131 bits (66), Expect = 3e-27 Identities = 87/94 (92%) Strand = Plus / Minus Query: 464 cctcaagttcctgtttacgagcttcctcctttctagcctctgacctagcactcctttgca 523 ||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||| Sbjct: 48097 cctcaagttcctgtttacgagcttcctccttcctagcctctgaccttgcatttctttgca 48038 Query: 524 cctcgaaaattaaagcagcgacagcaaccgaaaa 557 |||| |||||||||||||| ||||||||| |||| Sbjct: 48037 cctcaaaaattaaagcagcaacagcaacctaaaa 48004 Score = 61.9 bits (31), Expect = 2e-06 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand = Plus / Minus Query: 550 accgaaaagatgaagccttctccaatgagatctgtagcaaacttgtactgccttctcctc 609 |||||||| || |||||||||||||||||||| ||||| | ||||||| || |||||||| Sbjct: 47852 accgaaaaaataaagccttctccaatgagatccgtagc-agcttgtacagctttctcctc 47794 Query: 610 atctaaa 616 || |||| Sbjct: 47793 atttaaa 47787 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 156 tttgatccattcacccaaagaatgggcatggc 187 |||||||||| |||| |||||||||||||||| Sbjct: 49508 tttgatccatacaccaaaagaatgggcatggc 49477
>gb|AY110607.1| Zea mays CL3077_1 mRNA sequence Length = 920 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 487 tcctcctttctagcctctgacctagcactcctttgcacctc 527 ||||| ||||| || |||||||||||||| ||||||||||| Sbjct: 410 tcctcttttctggcttctgacctagcacttctttgcacctc 450
>ref|XM_465210.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1138 Score = 48.1 bits (24), Expect = 0.035 Identities = 63/76 (82%) Strand = Plus / Minus Query: 479 tacgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaag 538 ||||||| ||||| |||| ||||| ||||| || || ||||||||||| || |||| || Sbjct: 548 tacgagcctcctcttttcgggcctcggaccttgcgcttctttgcacctcaaagattacag 489 Query: 539 cagcgacagcaaccga 554 |||| |||||||||| Sbjct: 488 cagccccagcaaccga 473
>dbj|AK061035.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-A09, full insert sequence Length = 1138 Score = 48.1 bits (24), Expect = 0.035 Identities = 63/76 (82%) Strand = Plus / Minus Query: 479 tacgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaag 538 ||||||| ||||| |||| ||||| ||||| || || ||||||||||| || |||| || Sbjct: 548 tacgagcctcctcttttcgggcctcggaccttgcgcttctttgcacctcaaagattacag 489 Query: 539 cagcgacagcaaccga 554 |||| |||||||||| Sbjct: 488 cagccccagcaaccga 473
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.55 Identities = 61/74 (82%) Strand = Plus / Minus Query: 479 tacgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaag 538 ||||||| ||||| |||| ||||| ||||| || || ||||||||||| || |||| || Sbjct: 12320888 tacgagcctcctcttttcgggcctcggaccttgcgcttctttgcacctcaaagattacag 12320829 Query: 539 cagcgacagcaacc 552 |||| |||||||| Sbjct: 12320828 cagccccagcaacc 12320815
>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0705A04 Length = 182468 Score = 44.1 bits (22), Expect = 0.55 Identities = 61/74 (82%) Strand = Plus / Minus Query: 479 tacgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaag 538 ||||||| ||||| |||| ||||| ||||| || || ||||||||||| || |||| || Sbjct: 1025 tacgagcctcctcttttcgggcctcggaccttgcgcttctttgcacctcaaagattacag 966 Query: 539 cagcgacagcaacc 552 |||| |||||||| Sbjct: 965 cagccccagcaacc 952
>dbj|AP004845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1233_A01 Length = 98378 Score = 44.1 bits (22), Expect = 0.55 Identities = 61/74 (82%) Strand = Plus / Minus Query: 479 tacgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaag 538 ||||||| ||||| |||| ||||| ||||| || || ||||||||||| || |||| || Sbjct: 82913 tacgagcctcctcttttcgggcctcggaccttgcgcttctttgcacctcaaagattacag 82854 Query: 539 cagcgacagcaacc 552 |||| |||||||| Sbjct: 82853 cagccccagcaacc 82840
>dbj|AK100390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085P21, full insert sequence Length = 2682 Score = 44.1 bits (22), Expect = 0.55 Identities = 61/74 (82%) Strand = Plus / Minus Query: 479 tacgagcttcctcctttctagcctctgacctagcactcctttgcacctcgaaaattaaag 538 ||||||| ||||| |||| ||||| ||||| || || ||||||||||| || |||| || Sbjct: 512 tacgagcctcctcttttcgggcctcggaccttgcgcttctttgcacctcaaagattacag 453 Query: 539 cagcgacagcaacc 552 |||| |||||||| Sbjct: 452 cagccccagcaacc 439
>emb|AL831715.7| Mouse DNA sequence from clone RP23-48E15 on chromosome X, complete sequence Length = 163675 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 36 agaatacactcatctttatatcttgt 61 ||||||||||||||||||||| |||| Sbjct: 151918 agaatacactcatctttatattttgt 151943
>gb|BC094393.1| Mus musculus RIKEN cDNA 1110005A23 gene, mRNA (cDNA clone IMAGE:30550736), with apparent retained intron Length = 1097 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 51 agttcagcaagcttcagcttg 31
>ref|NM_025364.1| Mus musculus RIKEN cDNA 1110005A23 gene (1110005A23Rik), mRNA Length = 893 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 64 agttcagcaagcttcagcttg 44
>gb|AY593992.1| Homo sapiens upstream transcription factor 1 (USF1) gene, complete cds Length = 9549 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 gaaaagatgaagccttctcca 573 ||||||||||||||||||||| Sbjct: 6764 gaaaagatgaagccttctcca 6744
>ref|XM_991289.1| PREDICTED: Mus musculus similar to cytokine induced protein 29 kDa (LOC636633), mRNA Length = 866 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 83 agttcagcaagcttcagcttg 63
>ref|XM_924323.2| PREDICTED: Mus musculus similar to cytokine induced protein 29 kDa, transcript variant 2 (LOC636633), mRNA Length = 866 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 83 agttcagcaagcttcagcttg 63
>ref|XM_899946.2| PREDICTED: Mus musculus similar to cytokine induced protein 29 kDa, transcript variant 2 (LOC625193), mRNA Length = 866 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 83 agttcagcaagcttcagcttg 63
>gb|AC132088.4| Mus musculus BAC clone RP24-410M8 from chromosome 19, complete sequence Length = 159681 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 30718 agttcagcaagcttcagcttg 30738
>gb|AC134830.2| Mus musculus BAC clone RP24-498G16 from chromosome 19, complete sequence Length = 155666 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 27141 agttcagcaagcttcagcttg 27121
>emb|AL591806.16| Human DNA sequence from clone RP11-544M22 on chromosome 1 Contains the 3' end of a novel gene, the 5' end of the ITLN2 gene for intelectin 2, the F11R gene for F11 receptor, the gene for KAT protein, the USF1 gene for upstream transcription factor 1, the gene for a novel protein, the PVRL4 gene for poliovirus receptor-related 4, a novel gene, the gene for a novel protein (MGC33338), the PFDN2 gene for prefoldin 2, the NIT1 gene for nitrilase 1 and the DEDD gene for death effector domain containing, complete sequence Length = 200822 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 553 gaaaagatgaagccttctcca 573 ||||||||||||||||||||| Sbjct: 94102 gaaaagatgaagccttctcca 94122
>emb|AL589847.6| Human DNA sequence from clone RP13-477D10 on chromosome X, complete sequence Length = 103196 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 ctctgacctagcactcctttg 521 ||||||||||||||||||||| Sbjct: 85118 ctctgacctagcactcctttg 85098
>emb|AL359853.18| Human DNA sequence from clone RP11-12M5 on chromosome 1 Contains five novel genes and a CpG island, complete sequence Length = 173031 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 ctattatttcatcaggatgtc 133 ||||||||||||||||||||| Sbjct: 76847 ctattatttcatcaggatgtc 76827
>dbj|AK146248.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730042C22 product:Nuclear protein Hcc-1, full insert sequence Length = 919 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 90 agttcagcaagcttcagcttg 70
>gb|AC018691.10| Homo sapiens BAC clone RP11-547F10 from 2, complete sequence Length = 187298 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 554 aaaagatgaagccttctccaa 574 ||||||||||||||||||||| Sbjct: 63776 aaaagatgaagccttctccaa 63796
>dbj|AK003453.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110005A23 product:hypothetical SAP domain containing protein, full insert sequence Length = 893 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 64 agttcagcaagcttcagcttg 44
>dbj|AK088266.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430008O03 product:NUCLEAR PROTEIN HCC-1 homolog [Mus musculus], full insert sequence Length = 890 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 61 agttcagcaagcttcagcttg 41
>dbj|AK018773.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500016M05 product:NUCLEAR PROTEIN HCC-1 homolog [Mus musculus], full insert sequence Length = 620 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 75 agttcagcaagcttcagcttg 55
>emb|AL732501.8| Mouse DNA sequence from clone RP23-325I22 on chromosome X, complete sequence Length = 206856 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 atagtatcaaagaactgtgacagaa 213 ||||||||||| ||||||||||||| Sbjct: 193329 atagtatcaaaaaactgtgacagaa 193353
>gb|BC027510.1| Mus musculus RIKEN cDNA 1110005A23 gene, mRNA (cDNA clone MGC:41057 IMAGE:1382354), complete cds Length = 908 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 51 agttcagcaagcttcagcttg 31
>emb|BX936462.20| Zebrafish DNA sequence from clone CH211-147O6 in linkage group 20, complete sequence Length = 196432 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 atgagatctgtagcaaacttgtact 598 ||||||||||||||||||| ||||| Sbjct: 150559 atgagatctgtagcaaactagtact 150535
>emb|BX470265.3| Zebrafish DNA sequence from clone CH211-87A14 in linkage group 20, complete sequence Length = 166824 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 574 atgagatctgtagcaaacttgtact 598 ||||||||||||||||||| ||||| Sbjct: 70485 atgagatctgtagcaaactagtact 70509
>gb|BC100070.1| Rattus norvegicus similar to RIKEN cDNA 1110005A23, mRNA (cDNA clone MGC:112623 IMAGE:7385206), complete cds Length = 1244 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 205 agttcagcaagcttcagcttg 185
>dbj|AB017568.1| Homo sapiens USF1 gene, complete cds Length = 9724 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 gaaaagatgaagccttctcca 573 ||||||||||||||||||||| Sbjct: 8502 gaaaagatgaagccttctcca 8482
>ref|NM_001033070.1| Rattus norvegicus similar to RIKEN cDNA 1110005A23 (RGD1305692), mRNA Length = 1244 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagcttg 417 ||||||||||||||||||||| Sbjct: 205 agttcagcaagcttcagcttg 185
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 cctttggcgaggcgctcaag 398 |||||||||||||||||||| Sbjct: 988440 cctttggcgaggcgctcaag 988421
>gb|AY617967.1| Sterkiella histriomuscorum clone UGC1O0006_K18_F genomic sequence Length = 739 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 aagcttcagcttgagctctt 424 |||||||||||||||||||| Sbjct: 485 aagcttcagcttgagctctt 504
>ref|XM_744626.1| Aspergillus fumigatus Af293 SIR2 family histone deacetylase (Afu2g05900) partial mRNA Length = 1278 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 cagttcctcaagttcctgtt 478 |||||||||||||||||||| Sbjct: 846 cagttcctcaagttcctgtt 827
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 ttccttgctgctatctgcca 337 |||||||||||||||||||| Sbjct: 2412049 ttccttgctgctatctgcca 2412068
>emb|AL390997.10| Human DNA sequence from clone RP11-159G6 on chromosome Xq21.33-23, complete sequence Length = 112328 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 ctcttctaaatctttagcta 439 |||||||||||||||||||| Sbjct: 81612 ctcttctaaatctttagcta 81593
>emb|AL354796.21| Human DNA sequence from clone RP11-145E17 on chromosome 9 Contains the 5'end of a novel gene (FLJ00318), a novel gene and two CpG islands, complete sequence Length = 156466 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 593 tgtactgccttctcctcatc 612 |||||||||||||||||||| Sbjct: 146703 tgtactgccttctcctcatc 146684
>emb|AL137839.6| Human DNA sequence from clone RP3-471C18 on chromosome 6 Contains the 3' end of two novel genes, complete sequence Length = 108793 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 ctaaaatctcttccttttgt 456 |||||||||||||||||||| Sbjct: 29273 ctaaaatctcttccttttgt 29254
>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3, complete sequence Length = 241961 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cccccttctcctgaccaaag 289 |||||||||||||||||||| Sbjct: 12188 cccccttctcctgaccaaag 12169
>dbj|AP006861.1| Chlamydophila felis Fe/C-56 DNA, complete genome Length = 1166239 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 tctttagctaaaatctcttc 449 |||||||||||||||||||| Sbjct: 1000739 tctttagctaaaatctcttc 1000758
>gb|AC098719.3| Mus musculus clone RP23-2M3, complete sequence Length = 219626 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 acagaagaaaccaattagcc 227 |||||||||||||||||||| Sbjct: 14879 acagaagaaaccaattagcc 14860
>emb|AL954696.17| Zebrafish DNA sequence from clone CH211-234K4, complete sequence Length = 149858 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 caatcacactattatttcat 124 |||||||||||||||||||| Sbjct: 141997 caatcacactattatttcat 141978
>gb|AC073063.12| Homo sapiens BAC clone RP11-136B3 from 7, complete sequence Length = 84113 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagctt 416 |||||||||||||||||||| Sbjct: 72997 agttcagcaagcttcagctt 72978
>dbj|AK156103.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830008B03 product:unclassifiable, full insert sequence Length = 2945 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 agcaagcttcagcttgagctcttc 425 |||| ||||||||||||||||||| Sbjct: 611 agcatgcttcagcttgagctcttc 634
>gb|AC079345.5| Homo sapiens BAC clone RP11-181C18 from 4, complete sequence Length = 171325 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 atctcttccttttgtctcag 461 |||||||||||||||||||| Sbjct: 72070 atctcttccttttgtctcag 72089
>gb|BC109532.1| Bos taurus cDNA clone MGC:133754 IMAGE:8056746, complete cds Length = 912 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 agttcagcaagcttcagctt 416 |||||||||||||||||||| Sbjct: 61 agttcagcaagcttcagctt 42
>gb|AC150244.2| Medicago truncatula chromosome 7 BAC clone mth2-180p14, complete sequence Length = 115289 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 tgtctcagttcctcaagttc 473 |||||||||||||||||||| Sbjct: 8286 tgtctcagttcctcaagttc 8305
>gb|AC159643.2| Mus musculus BAC clone RP23-384H10 from chromosome 12, complete sequence Length = 200939 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 agaagaaaccaattagccaa 229 |||||||||||||||||||| Sbjct: 130601 agaagaaaccaattagccaa 130620
>gb|AC116407.18| Homo sapiens chromosome 17, clone CTD-2095E4, complete sequence Length = 104176 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 agtaagaatacactcatctt 51 |||||||||||||||||||| Sbjct: 3091 agtaagaatacactcatctt 3072
>gb|AC104088.6| Homo sapiens BAC clone RP11-744C22 from 2, complete sequence Length = 158746 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 agaactgtgacagaagaaac 218 |||||||||||||||||||| Sbjct: 110230 agaactgtgacagaagaaac 110211
>gb|AC146422.4| Pan troglodytes BAC clone RP43-27K9 from chromosome 7, complete sequence Length = 189507 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 agttcagcaagcttcagctt 416 |||||||||||||||||||| Sbjct: 134804 agttcagcaagcttcagctt 134823
>gb|AC153655.4| Mus musculus BAC clone RP23-451K20 from chromosome 1, complete sequence Length = 167208 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 ctttatatcttgttctgtgg 68 |||||||||||||||||||| Sbjct: 121466 ctttatatcttgttctgtgg 121447
>gb|AC026620.17| Homo sapiens chromosome 17, clone RP11-443G13, complete sequence Length = 156300 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 agtaagaatacactcatctt 51 |||||||||||||||||||| Sbjct: 47650 agtaagaatacactcatctt 47669
>emb|BX004839.9| Zebrafish DNA sequence from clone DKEY-18A23 in linkage group 6, complete sequence Length = 223000 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 aggatgtctaatggatcaac 145 |||||||||||||||||||| Sbjct: 1532 aggatgtctaatggatcaac 1513
>gb|AC007894.2|F21H2 Arabidopsis thaliana chromosome 1 BAC F21H2 sequence, complete sequence Length = 88512 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tcacacaatcacactattat 119 |||||||||||||||||||| Sbjct: 51436 tcacacaatcacactattat 51455
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 ttccagaaaggcctcgtcct 381 |||||||||||||||||||| Sbjct: 616017 ttccagaaaggcctcgtcct 615998
>gb|AC140425.3| Mus musculus BAC clone RP24-97E12 from 1, complete sequence Length = 187415 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 ctttatatcttgttctgtgg 68 |||||||||||||||||||| Sbjct: 43576 ctttatatcttgttctgtgg 43557
>gb|AC147644.3| Gallus gallus BAC clone CH261-77K20 from chromosome unknown, complete sequence Length = 191888 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 449 ccttttgtctcagttcctcaagtt 472 |||||| ||||||||||||||||| Sbjct: 94693 ccttttctctcagttcctcaagtt 94716
>gb|AC149588.4| Mus musculus BAC clone RP23-366I10 from 15, complete sequence Length = 200656 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acagaagaaaccaattagcc 227 |||||||||||||||||||| Sbjct: 23692 acagaagaaaccaattagcc 23711
>emb|CT030154.8| Mouse DNA sequence from clone RP23-387H3 on chromosome 12, complete sequence Length = 213294 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 agaagaaaccaattagccaa 229 |||||||||||||||||||| Sbjct: 164497 agaagaaaccaattagccaa 164478
>emb|AL808126.10| Mouse DNA sequence from clone RP23-37B4 on chromosome 2, complete sequence Length = 94874 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 tcaagcaggtgttgcttcct 322 |||||||||||||||||||| Sbjct: 85686 tcaagcaggtgttgcttcct 85705
>gb|AC172101.1| Medicago truncatula chromosome 7 BAC clone mth2-29f3, complete sequence Length = 88313 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 tgtctcagttcctcaagttc 473 |||||||||||||||||||| Sbjct: 86458 tgtctcagttcctcaagttc 86477
>emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chromosome X, complete sequence Length = 195413 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tttcatcaggatgtctaatg 138 |||||||||||||||||||| Sbjct: 120066 tttcatcaggatgtctaatg 120047
>emb|AL645856.5| Mouse DNA sequence from clone RP23-151N19 on chromosome 11, complete sequence Length = 116300 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 agcaagcttcagcttgagctcttc 425 |||| ||||||||||||||||||| Sbjct: 107498 agcatgcttcagcttgagctcttc 107521 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,283,510 Number of Sequences: 3902068 Number of extensions: 6283510 Number of successful extensions: 159531 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 159276 Number of HSP's gapped (non-prelim): 254 length of query: 627 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 604 effective length of database: 17,143,297,704 effective search space: 10354551813216 effective search space used: 10354551813216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)