ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd17p05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome... 254 2e-64
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 254 2e-64
3dbj|AK058340.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 2e-64
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 254 2e-64
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 230 3e-57
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 230 3e-57
7emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa... 230 3e-57
8gb|AY108120.1| Zea mays PCO106809 mRNA sequence 214 2e-52
9gb|BT019015.1| Zea mays clone Contig510.F mRNA sequence 198 1e-47
10gb|AY105685.1| Zea mays PCO106810 mRNA sequence 188 1e-44
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
12dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
13dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
14ref|NM_125998.3| Arabidopsis thaliana RNA binding / nucleic acid... 46 0.11
15emb|BX833141.1|CNS09Z0Y Arabidopsis thaliana Full-length cDNA Co... 46 0.11
16dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 46 0.11
17emb|AL137164.3|CNS01DWF Human chromosome 14 DNA sequence BAC R-8... 46 0.11
18gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, co... 44 0.43
19ref|XM_785745.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.7
20dbj|AP006393.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.7
21dbj|AP004474.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.7
22ref|XM_381865.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 6.7
23emb|AL390197.19| Human DNA sequence from clone RP11-190F19 on ch... 40 6.7
24gb|AF530057.1| Turnip mosaic virus strain L polyprotein precurso... 40 6.7
25emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A stra... 40 6.7
26emb|BX538138.1|HSM806339 Homo sapiens genomic DNA; cDNA DKFZp686... 40 6.7
27gb|AC025069.9| Homo sapiens chromosome 11, clone RP11-132I17, co... 40 6.7
28gb|AC021824.7| Homo sapiens chromosome 11, clone RP11-220C23, co... 40 6.7
29gb|AC099785.2| Homo sapiens chromosome 1 clone RP11-435I3, compl... 40 6.7
30gb|AC118471.2| Homo sapiens chromosome 1 clone RP11-377O11, comp... 40 6.7
31gb|AC105750.2| Homo sapiens chromosome 3 clone RP11-776K4, compl... 40 6.7
32gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 6.7
33gb|AC020591.7| Homo sapiens BAC clone RP11-150O15 from 2, comple... 40 6.7
34gb|AF539411.1| Turnip mosaic virus TuMV-SD5 coat protein (CP) mR... 40 6.7
35dbj|AB180023.1| Turnip mosaic virus gene for polyprotein, partia... 40 6.7
36dbj|AB180021.1| Turnip mosaic virus gene for polyprotein, partia... 40 6.7
37dbj|AB180016.1| Turnip mosaic virus gene for polyprotein, partia... 40 6.7
38emb|AJ297629.2|TMO297629 Turnip mosaic virus genomic RNA for par... 40 6.7
39dbj|AP001892.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.7
40emb|CT010575.15| Mouse DNA sequence from clone RP23-217J21 on ch... 40 6.7
41gb|AC015720.20| Homo sapiens chromosome 15, clone RP11-151H2, co... 40 6.7
42dbj|AB076553.1| Turnip mosaic virus CP gene for polyprotein, par... 40 6.7 
>gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0019B24, complete sequence
          Length = 162385

 Score =  254 bits (128), Expect = 2e-64
 Identities = 221/252 (87%)
 Strand = Plus / Minus

                                                                         
Query: 244   ttcgccctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatg 303
             ||||||||||| |||||||| || || || |||||||||||||||||||| || || |||
Sbjct: 69685 ttcgccctgctggcctcctctggggttgatgggaacagctccacgtaccttgtcccaatg 69626

                                                                         
Query: 304   gtcatcttatccttgcacatggcagtctttgcaacctcggccgtcgggaactccacaaag 363
             |||||||| |||||||||||||| |||||||||||||| || || |||||||||||||||
Sbjct: 69625 gtcatcttgtccttgcacatggctgtctttgcaacctctgctgttgggaactccacaaag 69566

                                                                         
Query: 364   gcctcgccagtggccttcccatccgagcggtacgcgatgtgcacattgtcctccgtcagc 423
             || || ||||||||||| ||||| |  |||||||||||||||||||| ||||||||||||
Sbjct: 69565 gcttctccagtggccttaccatctggacggtacgcgatgtgcacattttcctccgtcagc 69506

                                                                         
Query: 424   tcgtactccacaaagaacttgatgatgtcctctatggtggcggagtaagggagcccacgc 483
             || |||||||||||||||||||||||||| ||  |||| || ||||| || || ||||| 
Sbjct: 69505 tcatactccacaaagaacttgatgatgtcttcagtggtagcagagtagggcaggccacgg 69446

                         
Query: 484   agcttcagcacc 495
             ||||| ||||||
Sbjct: 69445 agcttgagcacc 69434
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  254 bits (128), Expect = 2e-64
 Identities = 221/252 (87%)
 Strand = Plus / Minus

                                                                           
Query: 244     ttcgccctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatg 303
               ||||||||||| |||||||| || || || |||||||||||||||||||| || || |||
Sbjct: 1555149 ttcgccctgctggcctcctctggggttgatgggaacagctccacgtaccttgtcccaatg 1555090

                                                                           
Query: 304     gtcatcttatccttgcacatggcagtctttgcaacctcggccgtcgggaactccacaaag 363
               |||||||| |||||||||||||| |||||||||||||| || || |||||||||||||||
Sbjct: 1555089 gtcatcttgtccttgcacatggctgtctttgcaacctctgctgttgggaactccacaaag 1555030

                                                                           
Query: 364     gcctcgccagtggccttcccatccgagcggtacgcgatgtgcacattgtcctccgtcagc 423
               || || ||||||||||| ||||| |  |||||||||||||||||||| ||||||||||||
Sbjct: 1555029 gcttctccagtggccttaccatctggacggtacgcgatgtgcacattttcctccgtcagc 1554970

                                                                           
Query: 424     tcgtactccacaaagaacttgatgatgtcctctatggtggcggagtaagggagcccacgc 483
               || |||||||||||||||||||||||||| ||  |||| || ||||| || || ||||| 
Sbjct: 1554969 tcatactccacaaagaacttgatgatgtcttcagtggtagcagagtagggcaggccacgg 1554910

                           
Query: 484     agcttcagcacc 495
               ||||| ||||||
Sbjct: 1554909 agcttgagcacc 1554898
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>dbj|AK058340.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D07, full
            insert sequence
          Length = 1401

 Score =  254 bits (128), Expect = 2e-64
 Identities = 221/252 (87%)
 Strand = Plus / Minus

                                                                        
Query: 244  ttcgccctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatg 303
            ||||||||||| |||||||| || || || |||||||||||||||||||| || || |||
Sbjct: 1192 ttcgccctgctggcctcctctggggttgatgggaacagctccacgtaccttgtcccaatg 1133

                                                                        
Query: 304  gtcatcttatccttgcacatggcagtctttgcaacctcggccgtcgggaactccacaaag 363
            |||||||| |||||||||||||| |||||||||||||| || || |||||||||||||||
Sbjct: 1132 gtcatcttgtccttgcacatggctgtctttgcaacctctgctgttgggaactccacaaag 1073

                                                                        
Query: 364  gcctcgccagtggccttcccatccgagcggtacgcgatgtgcacattgtcctccgtcagc 423
            || || ||||||||||| ||||| |  |||||||||||||||||||| ||||||||||||
Sbjct: 1072 gcttctccagtggccttaccatctggacggtacgcgatgtgcacattttcctccgtcagc 1013

                                                                        
Query: 424  tcgtactccacaaagaacttgatgatgtcctctatggtggcggagtaagggagcccacgc 483
            || |||||||||||||||||||||||||| ||  |||| || ||||| || || ||||| 
Sbjct: 1012 tcatactccacaaagaacttgatgatgtcttcagtggtagcagagtagggcaggccacgg 953

                        
Query: 484  agcttcagcacc 495
            ||||| ||||||
Sbjct: 952  agcttgagcacc 941
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  254 bits (128), Expect = 2e-64
 Identities = 221/252 (87%)
 Strand = Plus / Minus

                                                                           
Query: 244     ttcgccctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatg 303
               ||||||||||| |||||||| || || || |||||||||||||||||||| || || |||
Sbjct: 1552870 ttcgccctgctggcctcctctggggttgatgggaacagctccacgtaccttgtcccaatg 1552811

                                                                           
Query: 304     gtcatcttatccttgcacatggcagtctttgcaacctcggccgtcgggaactccacaaag 363
               |||||||| |||||||||||||| |||||||||||||| || || |||||||||||||||
Sbjct: 1552810 gtcatcttgtccttgcacatggctgtctttgcaacctctgctgttgggaactccacaaag 1552751

                                                                           
Query: 364     gcctcgccagtggccttcccatccgagcggtacgcgatgtgcacattgtcctccgtcagc 423
               || || ||||||||||| ||||| |  |||||||||||||||||||| ||||||||||||
Sbjct: 1552750 gcttctccagtggccttaccatctggacggtacgcgatgtgcacattttcctccgtcagc 1552691

                                                                           
Query: 424     tcgtactccacaaagaacttgatgatgtcctctatggtggcggagtaagggagcccacgc 483
               || |||||||||||||||||||||||||| ||  |||| || ||||| || || ||||| 
Sbjct: 1552690 tcatactccacaaagaacttgatgatgtcttcagtggtagcagagtagggcaggccacgg 1552631

                           
Query: 484     agcttcagcacc 495
               ||||| ||||||
Sbjct: 1552630 agcttgagcacc 1552619
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  230 bits (116), Expect = 3e-57
 Identities = 218/252 (86%)
 Strand = Plus / Minus

                                                                           
Query: 244     ttcgccctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatg 303
               ||||||||||| |||||||| || || || |||||||||||||||||||| || || |||
Sbjct: 1498162 ttcgccctgctggcctcctctggggttgatgggaacagctccacgtaccttgtcccaatg 1498103

                                                                           
Query: 304     gtcatcttatccttgcacatggcagtctttgcaacctcggccgtcgggaactccacaaag 363
               |||||||| |||||||||||||| |||||  ||||||| || ||||||||||||||| ||
Sbjct: 1498102 gtcatcttgtccttgcacatggctgtcttcacaacctctgctgtcgggaactccacatag 1498043

                                                                           
Query: 364     gcctcgccagtggccttcccatccgagcggtacgcgatgtgcacattgtcctccgtcagc 423
               || || ||||||||||| ||||| |  |||||| ||||||||||||| || |||||||||
Sbjct: 1498042 gcttctccagtggccttaccatctggacggtacacgatgtgcacattttcgtccgtcagc 1497983

                                                                           
Query: 424     tcgtactccacaaagaacttgatgatgtcctctatggtggcggagtaagggagcccacgc 483
               ||||||||||||||||||||||||||||| ||  |||| || ||||| || || ||||| 
Sbjct: 1497982 tcgtactccacaaagaacttgatgatgtcttcagtggtagcagagtagggcaggccacgg 1497923

                           
Query: 484     agcttcagcacc 495
               ||||| ||||||
Sbjct: 1497922 agcttgagcacc 1497911
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  230 bits (116), Expect = 3e-57
 Identities = 218/252 (86%)
 Strand = Plus / Minus

                                                                           
Query: 244     ttcgccctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatg 303
               ||||||||||| |||||||| || || || |||||||||||||||||||| || || |||
Sbjct: 1498162 ttcgccctgctggcctcctctggggttgatgggaacagctccacgtaccttgtcccaatg 1498103

                                                                           
Query: 304     gtcatcttatccttgcacatggcagtctttgcaacctcggccgtcgggaactccacaaag 363
               |||||||| |||||||||||||| |||||  ||||||| || ||||||||||||||| ||
Sbjct: 1498102 gtcatcttgtccttgcacatggctgtcttcacaacctctgctgtcgggaactccacatag 1498043

                                                                           
Query: 364     gcctcgccagtggccttcccatccgagcggtacgcgatgtgcacattgtcctccgtcagc 423
               || || ||||||||||| ||||| |  |||||| ||||||||||||| || |||||||||
Sbjct: 1498042 gcttctccagtggccttaccatctggacggtacacgatgtgcacattttcgtccgtcagc 1497983

                                                                           
Query: 424     tcgtactccacaaagaacttgatgatgtcctctatggtggcggagtaagggagcccacgc 483
               ||||||||||||||||||||||||||||| ||  |||| || ||||| || || ||||| 
Sbjct: 1497982 tcgtactccacaaagaacttgatgatgtcttcagtggtagcagagtagggcaggccacgg 1497923

                           
Query: 484     agcttcagcacc 495
               ||||| ||||||
Sbjct: 1497922 agcttgagcacc 1497911
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>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183385

 Score =  230 bits (116), Expect = 3e-57
 Identities = 218/252 (86%)
 Strand = Plus / Plus

                                                                          
Query: 244    ttcgccctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatg 303
              ||||||||||| |||||||| || || || |||||||||||||||||||| || || |||
Sbjct: 127570 ttcgccctgctggcctcctctggggttgatgggaacagctccacgtaccttgtcccaatg 127629

                                                                          
Query: 304    gtcatcttatccttgcacatggcagtctttgcaacctcggccgtcgggaactccacaaag 363
              |||||||| |||||||||||||| |||||  ||||||| || ||||||||||||||| ||
Sbjct: 127630 gtcatcttgtccttgcacatggctgtcttcacaacctctgctgtcgggaactccacatag 127689

                                                                          
Query: 364    gcctcgccagtggccttcccatccgagcggtacgcgatgtgcacattgtcctccgtcagc 423
              || || ||||||||||| ||||| |  |||||| ||||||||||||| || |||||||||
Sbjct: 127690 gcttctccagtggccttaccatctggacggtacacgatgtgcacattttcgtccgtcagc 127749

                                                                          
Query: 424    tcgtactccacaaagaacttgatgatgtcctctatggtggcggagtaagggagcccacgc 483
              ||||||||||||||||||||||||||||| ||  |||| || ||||| || || ||||| 
Sbjct: 127750 tcgtactccacaaagaacttgatgatgtcttcagtggtagcagagtagggcaggccacgg 127809

                          
Query: 484    agcttcagcacc 495
              ||||| ||||||
Sbjct: 127810 agcttgagcacc 127821
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>gb|AY108120.1| Zea mays PCO106809 mRNA sequence
          Length = 1052

 Score =  214 bits (108), Expect = 2e-52
 Identities = 213/248 (85%)
 Strand = Plus / Minus

                                                                       
Query: 244 ttcgccctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatg 303
           ||||||||||| |||||||| || ||||| |||||||||||||||||||| || || |||
Sbjct: 997 ttcgccctgctggcctcctctggggtcgacgggaacagctccacgtacctcgtcccaatg 938

                                                                       
Query: 304 gtcatcttatccttgcacatggcagtctttgcaacctcggccgtcgggaactccacaaag 363
           ||||||||||||||||||||||| ||||| || || || || ||||| ||||| || |||
Sbjct: 937 gtcatcttatccttgcacatggccgtcttcgcgacttcagctgtcggaaactcaacgaag 878

                                                                       
Query: 364 gcctcgccagtggccttcccatccgagcggtacgcgatgtgcacattgtcctccgtcagc 423
           || || || |||||||||||||| |||||||| ||||| ||||| || ||||| | ||||
Sbjct: 877 gcttcacccgtggccttcccatcggagcggtaggcgatatgcacgttctcctctgccagc 818

                                                                       
Query: 424 tcgtactccacaaagaacttgatgatgtcctctatggtggcggagtaagggagcccacgc 483
           ||||||||||  ||||||||||||||||||||  ||||||| ||||| || ||||| || 
Sbjct: 817 tcgtactccaggaagaacttgatgatgtcctcagtggtggcagagtagggaagcccgcgg 758

                   
Query: 484 agcttcag 491
           ||||||||
Sbjct: 757 agcttcag 750
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>gb|BT019015.1| Zea mays clone Contig510.F mRNA sequence
          Length = 1222

 Score =  198 bits (100), Expect = 1e-47
 Identities = 211/248 (85%)
 Strand = Plus / Minus

                                                                        
Query: 244  ttcgccctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatg 303
            ||||||||||| |||||||| || ||||| |||||||||||| ||||||| || || || 
Sbjct: 1001 ttcgccctgctggcctcctctggggtcgacgggaacagctccccgtacctcgtcccaata 942

                                                                        
Query: 304  gtcatcttatccttgcacatggcagtctttgcaacctcggccgtcgggaactccacaaag 363
            ||||||||||||||||||||||| ||||| || || || || ||||| ||||| || |||
Sbjct: 941  gtcatcttatccttgcacatggccgtcttcgcgacttccgctgtcggaaactcaacgaag 882

                                                                        
Query: 364  gcctcgccagtggccttcccatccgagcggtacgcgatgtgcacattgtcctccgtcagc 423
            || || || |||||||||||||| |||||||| ||||| ||||| || ||||| | ||||
Sbjct: 881  gcttcacccgtggccttcccatcggagcggtaggcgatatgcacgttctcctctgccagc 822

                                                                        
Query: 424  tcgtactccacaaagaacttgatgatgtcctctatggtggcggagtaagggagcccacgc 483
            ||||||||||  ||||||||||||||||||||  ||||||| ||||| || ||||| || 
Sbjct: 821  tcgtactccaggaagaacttgatgatgtcctcagtggtggcagagtagggaagcccgcgg 762

                    
Query: 484  agcttcag 491
            ||||||||
Sbjct: 761  agcttcag 754
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>gb|AY105685.1| Zea mays PCO106810 mRNA sequence
          Length = 1270

 Score =  188 bits (95), Expect = 1e-44
 Identities = 212/251 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  tcgccctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatgg 304
            ||||||||||||||||||| || || || |||||||||||||| ||||| || ||||| |
Sbjct: 1015 tcgccctgctcgcctcctctggggtagacgggaacagctccacatacctcgtcccgatag 956

                                                                        
Query: 305  tcatcttatccttgcacatggcagtctttgcaacctcggccgtcgggaactccacaaagg 364
            ||||||||||||||||||| || ||||| ||||| || || || |||||||| |||||||
Sbjct: 955  tcatcttatccttgcacatcgccgtcttggcaacttcagctgttgggaactcaacaaagg 896

                                                                        
Query: 365  cctcgccagtggccttcccatccgagcggtacgcgatgtgcacattgtcctccgtcagct 424
            | || || || || |||||||| ||||||  ||| || |||||||| ||||| |||||||
Sbjct: 895  cttcaccggtagctttcccatctgagcggatcgcaatatgcacattctcctctgtcagct 836

                                                                        
Query: 425  cgtactccacaaagaacttgatgatgtcctctatggtggcggagtaagggagcccacgca 484
            | |||||||  ||||||||||||||||||||  | || || ||||| || |||||||| |
Sbjct: 835  catactccaggaagaacttgatgatgtcctcagtcgtcgcagagtagggaagcccacgga 776

                       
Query: 485  gcttcagcacc 495
            |||||||||||
Sbjct: 775  gcttcagcacc 765
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                            
Query: 391      cggtacgcgatgtgcacattgtcctccgtcagctcgtactccacaaagaacttgatgatg 450
                ||||||||| |||||||||| |||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 35838563 cggtacgcggtgtgcacattttcctccgtcaactcatactctacaaagaacttgatgatg 35838504

                  
Query: 451      tc 452
                ||
Sbjct: 35838503 tc 35838502



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                            
Query: 249      cctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatggtcat 308
                |||||| |||||||| || || || ||||||||||||| |||||| || || ||||||||
Sbjct: 35838694 cctgctggcctcctctggggttgatgggaacagctccatgtaccttgtcccaatggtcat 35838635

                                               
Query: 309      cttatccttgcacatggcagtctttgcaacc 339
                ||| |||||||| ||||| ||||| ||||||
Sbjct: 35838634 cttgtccttgcatatggctgtcttcgcaacc 35838604
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>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_E10
          Length = 107284

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                         
Query: 391   cggtacgcgatgtgcacattgtcctccgtcagctcgtactccacaaagaacttgatgatg 450
             ||||||||| |||||||||| |||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 29109 cggtacgcggtgtgcacattttcctccgtcaactcatactctacaaagaacttgatgatg 29050

               
Query: 451   tc 452
             ||
Sbjct: 29049 tc 29048



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                         
Query: 249   cctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatggtcat 308
             |||||| |||||||| || || || ||||||||||||| |||||| || || ||||||||
Sbjct: 29240 cctgctggcctcctctggggttgatgggaacagctccatgtaccttgtcccaatggtcat 29181

                                            
Query: 309   cttatccttgcacatggcagtctttgcaacc 339
             ||| |||||||| ||||| ||||| ||||||
Sbjct: 29180 cttgtccttgcatatggctgtcttcgcaacc 29150
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>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1149_C12
          Length = 120743

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                          
Query: 391    cggtacgcgatgtgcacattgtcctccgtcagctcgtactccacaaagaacttgatgatg 450
              ||||||||| |||||||||| |||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 109278 cggtacgcggtgtgcacattttcctccgtcaactcatactctacaaagaacttgatgatg 109219

                
Query: 451    tc 452
              ||
Sbjct: 109218 tc 109217



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                          
Query: 249    cctgctcgcctcctcgggagtcgaggggaacagctccacgtacctggtaccgatggtcat 308
              |||||| |||||||| || || || ||||||||||||| |||||| || || ||||||||
Sbjct: 109409 cctgctggcctcctctggggttgatgggaacagctccatgtaccttgtcccaatggtcat 109350

                                             
Query: 309    cttatccttgcacatggcagtctttgcaacc 339
              ||| |||||||| ||||| ||||| ||||||
Sbjct: 109349 cttgtccttgcatatggctgtcttcgcaacc 109319
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>ref|NM_125998.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G66010
           mRNA, complete cds
          Length = 1116

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 352 aactccacaaaggcctcgccagtggccttcccatc 386
           ||||||||||| ||||| || ||||||||||||||
Sbjct: 743 aactccacaaatgcctctcccgtggccttcccatc 709
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>emb|BX833141.1|CNS09Z0Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL36ZA08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 832

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 352 aactccacaaaggcctcgccagtggccttcccatc 386
           ||||||||||| ||||| || ||||||||||||||
Sbjct: 591 aactccacaaatgcctctcccgtggccttcccatc 557
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>dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2A18
          Length = 79899

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 352   aactccacaaaggcctcgccagtggccttcccatc 386
             ||||||||||| ||||| || ||||||||||||||
Sbjct: 17106 aactccacaaatgcctctcccgtggccttcccatc 17072
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>emb|AL137164.3|CNS01DWF Human chromosome 14 DNA sequence BAC R-893D14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175368

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 307   atcttatccttgcacatggcagtcttt 333
             ||||| |||||||||||||||||||||
Sbjct: 89740 atcttctccttgcacatggcagtcttt 89714
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>gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, complete sequence
          Length = 220443

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 193    cccagggttcagcatcttgtgg 214
              ||||||||||||||||||||||
Sbjct: 175012 cccagggttcagcatcttgtgg 175033
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>ref|XM_785745.1| PREDICTED: Strongylocentrotus purpuratus similar to alanine
           aminotransferase 2 (LOC585940), mRNA
          Length = 1125

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 439 aacttgatgatgtcctctatg 459
           |||||||||||||||||||||
Sbjct: 455 aacttgatgatgtcctctatg 435
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>dbj|AP006393.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT03B16, TM0276,
             complete sequence
          Length = 91654

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   acaatttttaagcatgatgag 150
             |||||||||||||||||||||
Sbjct: 57632 acaatttttaagcatgatgag 57612
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>dbj|AP004474.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13B22, TM0009,
             complete sequence
          Length = 77319

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   acaatttttaagcatgatgag 150
             |||||||||||||||||||||
Sbjct: 21762 acaatttttaagcatgatgag 21782
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>ref|XM_381865.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01689.1)
           partial mRNA
          Length = 393

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 350 ggaactccacaaaggcctcgccag 373
           ||||| ||||||||||||||||||
Sbjct: 109 ggaaccccacaaaggcctcgccag 132
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>emb|AL390197.19| Human DNA sequence from clone RP11-190F19 on chromosome 10 Contains the
              gene for a novel protein similar to HGF activator (HGFAC)
              and the NRAP gene for nebulin-related anchoring protein,
              complete sequence
          Length = 188349

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     tatctcatacacagtttttt 59
              ||||||||||||||||||||
Sbjct: 175688 tatctcatacacagtttttt 175707
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>gb|AF530057.1| Turnip mosaic virus strain L polyprotein precursor, gene, partial
           cds
          Length = 1317

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 409 ttgtcctccgtcagctcgta 428
           ||||||||||||||||||||
Sbjct: 623 ttgtcctccgtcagctcgta 604
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>emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              2/7
          Length = 349061

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    tgcacatggcagtctttgca 336
              ||||||||||||||||||||
Sbjct: 138235 tgcacatggcagtctttgca 138216
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>emb|BX538138.1|HSM806339 Homo sapiens genomic DNA; cDNA DKFZp686G10117 (from clone
           DKFZp686G10117)
          Length = 3766

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  tctcatcagaaacaggagcg 104
           ||||||||||||||||||||
Sbjct: 864 tctcatcagaaacaggagcg 883
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>gb|AC025069.9| Homo sapiens chromosome 11, clone RP11-132I17, complete sequence
          Length = 159986

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   gaacaagattatgcccttct 188
             ||||||||||||||||||||
Sbjct: 81687 gaacaagattatgcccttct 81668
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>gb|AC021824.7| Homo sapiens chromosome 11, clone RP11-220C23, complete sequence
          Length = 160869

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   gaacaagattatgcccttct 188
             ||||||||||||||||||||
Sbjct: 32460 gaacaagattatgcccttct 32441
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>gb|AC099785.2| Homo sapiens chromosome 1 clone RP11-435I3, complete sequence
          Length = 186160

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    tccacaaagaacttgatgat 449
              ||||||||||||||||||||
Sbjct: 183708 tccacaaagaacttgatgat 183727
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>gb|AC118471.2| Homo sapiens chromosome 1 clone RP11-377O11, complete sequence
          Length = 59063

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 430   tccacaaagaacttgatgat 449
             ||||||||||||||||||||
Sbjct: 58522 tccacaaagaacttgatgat 58503
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>gb|AC105750.2| Homo sapiens chromosome 3 clone RP11-776K4, complete sequence
          Length = 166478

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    gtctcatcagaaacaggagc 103
             ||||||||||||||||||||
Sbjct: 90691 gtctcatcagaaacaggagc 90672
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 317     tgcacatggcagtctttgca 336
               ||||||||||||||||||||
Sbjct: 2050300 tgcacatggcagtctttgca 2050319
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>gb|AC020591.7| Homo sapiens BAC clone RP11-150O15 from 2, complete sequence
          Length = 59623

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    agttacaatctcagcaaagtatct 44
             ||||| ||||||||||||||||||
Sbjct: 45338 agttataatctcagcaaagtatct 45315
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>gb|AF539411.1| Turnip mosaic virus TuMV-SD5 coat protein (CP) mRNA, partial cds
          Length = 867

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 409 ttgtcctccgtcagctcgta 428
           ||||||||||||||||||||
Sbjct: 383 ttgtcctccgtcagctcgta 364
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>dbj|AB180023.1| Turnip mosaic virus gene for polyprotein, partial cds
          Length = 1076

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 409 ttgtcctccgtcagctcgta 428
           ||||||||||||||||||||
Sbjct: 383 ttgtcctccgtcagctcgta 364
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>dbj|AB180021.1| Turnip mosaic virus gene for polyprotein, partial cds
          Length = 1076

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 409 ttgtcctccgtcagctcgta 428
           ||||||||||||||||||||
Sbjct: 383 ttgtcctccgtcagctcgta 364
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>dbj|AB180016.1| Turnip mosaic virus gene for polyprotein, partial cds
          Length = 1076

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 409 ttgtcctccgtcagctcgta 428
           ||||||||||||||||||||
Sbjct: 383 ttgtcctccgtcagctcgta 364
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>emb|AJ297629.2|TMO297629 Turnip mosaic virus genomic RNA for partial NIb replicase and coat
            protein, isolate Wenzhou
          Length = 1709

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 409  ttgtcctccgtcagctcgta 428
            ||||||||||||||||||||
Sbjct: 1016 ttgtcctccgtcagctcgta 997
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>dbj|AP001892.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-49M9, complete
              sequences
          Length = 144308

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     tctcatcagaaacaggagcg 104
              ||||||||||||||||||||
Sbjct: 118775 tctcatcagaaacaggagcg 118794
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>emb|CT010575.15| Mouse DNA sequence from clone RP23-217J21 on chromosome 13, complete
             sequence
          Length = 201791

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    tctcatcagaaacaggagcg 104
             ||||||||||||||||||||
Sbjct: 95027 tctcatcagaaacaggagcg 95008
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>gb|AC015720.20| Homo sapiens chromosome 15, clone RP11-151H2, complete sequence
          Length = 174559

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 35     caaagtatctcatacacagttttt 58
              ||||| ||||||||||||||||||
Sbjct: 132995 caaagaatctcatacacagttttt 133018
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>dbj|AB076553.1| Turnip mosaic virus CP gene for polyprotein, partial cds,
           isolate:HJ1S
          Length = 864

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 409 ttgtcctccgtcagctcgta 428
           ||||||||||||||||||||
Sbjct: 383 ttgtcctccgtcagctcgta 364


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,898,199
Number of Sequences: 3902068
Number of extensions: 3898199
Number of successful extensions: 69238
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69076
Number of HSP's gapped (non-prelim): 162
length of query: 495
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 473
effective length of database: 17,147,199,772
effective search space: 8110625492156
effective search space used: 8110625492156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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