>CHLP_SYNY3 (Q55087) Geranylgeranyl hydrogenase|
          Length = 407

 Score =  206 bits (525), Expect = 4e-53
 Identities = 101/148 (68%), Positives = 120/148 (81%)
 Frame = -2

Query: 712 EAHPIPEHPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRL 533
           EAHPIPEHPRP+RV GRV LVGDAAG VTK SGEGIYFAAKS RMCAE IVA S NG R+
Sbjct: 258 EAHPIPEHPRPRRVVGRVALVGDAAGTVTKSSGEGIYFAAKSARMCAETIVATSNNGQRV 317

Query: 532 VDESDLRKYLAEFDRLYWPTYKVLDILQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLY 353
             E+DL++Y+ ++D+ Y  TY VLDILQ+VFYR++A REAFVEMC+D  VQ++TFDSYLY
Sbjct: 318 PTEADLKQYIKQWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLY 377

Query: 352 KRVVPGNPIEDIKLAVNTIGSLVRATAL 269
           K VVP NP+  +K+   TIGSL+R  AL
Sbjct: 378 KTVVPANPLVQMKITAKTIGSLLRGNAL 405

>BCHP_RHOCA (P26172) Geranylgeranyl hydrogenase|
          Length = 391

 Score = 93.6 bits (231), Expect = 5e-19
 Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 1/143 (0%)
 Frame = -2

Query: 712 EAHPIPEHPRPKRVSGR-VTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTR 536
           E  PIP  P     +G+ V L GDAAG V   SGEGIY+A   GR  AEA +A   +G  
Sbjct: 244 EGAPIPLQPLDVWDNGKDVVLSGDAAGVVAPSSGEGIYYAHAGGRYAAEAAMAFLKSGK- 302

Query: 535 LVDESDLRKYLAEFDRLYWPTYKVLDILQKVFYRSNAAREAFVEMCADDYVQRMTFDSYL 356
               +DL+   A F + +   +KVL ++Q  +Y S+  RE FV +C D  VQRMTF+SY+
Sbjct: 303 ---PADLKLARAGFMKEHGTVFKVLRMMQDKYYHSDDRRERFVSLCHDVDVQRMTFESYM 359

Query: 355 YKRVVPGNPIEDIKLAVNTIGSL 287
            K++    P++++K+    +  L
Sbjct: 360 NKKMTKFQPLKNLKIGFKNLAHL 382

>Y1602_METBF (P96800) Hypothetical protein Mbar_A1602 (ORF3)|
          Length = 387

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -2

Query: 655 LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRLVDESDL-RKYLAEFDR 488
           LVGDAAG+    +GEGIY+A KSG + AE I +   +G  + D   L R+Y  E  R
Sbjct: 263 LVGDAAGFGEYWTGEGIYYAVKSGTIAAEVISSSIKSG--IFDRQALQRRYQREIIR 317

>Y1520_METJA (Q58915) Hypothetical protein MJ1520|
          Length = 387

 Score = 36.6 bits (83), Expect = 0.078
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -2

Query: 679 KRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI 563
           K     V LVGDAA +V   SG G+YF A  G++  E I
Sbjct: 256 KTFKDNVLLVGDAACHVKPLSGGGLYFGAMGGKIAGEVI 294

>COQ6_DROME (Q9VMQ5) Putative ubiquinone biosynthesis monooxgenase COQ6 (EC|
           1.14.13.-)
          Length = 477

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -2

Query: 673 VSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRLVDESDLRKY 506
           V     LVGDAA  V   +G+G+       R   E++ AG+  G +L D+  L KY
Sbjct: 365 VCNGAALVGDAAHRVHPLAGQGVNLGFSDVRYLVESLAAGAYAGFKLGDKQHLIKY 420

>ETFD_ACIAD (P94132) Probable electron transfer flavoprotein-ubiquinone|
           oxidoreductase (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone
           oxidoreductase) (ETF dehydrogenase)
           (Electron-transferring-flavoprotein dehydrogenase)
          Length = 570

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
 Frame = -2

Query: 655 LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANG---------TRLVD-----ESD 518
           L+GD AG++     +G + A KSG +C EA+    A G          R+V+     + +
Sbjct: 328 LIGDDAGFLNFAKIKGSHTAMKSGMLCGEAVFEAIARGVDKGGDLAIARVVEGEDLFDKE 387

Query: 517 LRKYLAEFDR 488
           L  Y  +FD+
Sbjct: 388 LTTYTQKFDK 397

>FIXC_RHIME (P09820) Protein fixC|
          Length = 435

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = -2

Query: 709 AHPIPE---HPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGT 539
           AH IPE   +  P+       +VGDAA        EG   A  SGRM  EAI    + G 
Sbjct: 281 AHLIPEGGFNAIPRLCGNGWVVVGDAAQLNNAVHREGSNLAMASGRMAGEAISIIKSRG- 339

Query: 538 RLVDESDLRKYLAEFDRLY 482
            ++D++ L  Y    D+ +
Sbjct: 340 GVMDKASLSLYKTMLDKSF 358

>Y532_METJA (Q57952) Hypothetical protein MJ0532 precursor|
          Length = 391

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -2

Query: 688 PRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRLVDESDLRK 509
           P  K  +  + +VGDAAG ++  +G GIY A   G +  E  VA  A       E  L++
Sbjct: 265 PIEKTYTDGLLVVGDAAGQISPLTGGGIYLAMDCGLIAGE--VASKAIKLNDWSEETLKE 322

Query: 508 Y 506
           Y
Sbjct: 323 Y 323

>VP2_BRD (P35934) Structural core protein VP2|
          Length = 908

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
 Frame = -2

Query: 553 SANGTRLVDESDLRKYLAEFDRLYWPTYKVLDILQK----------VFYRSNAAREAFVE 404
           +AN    V+   L  + A + RL  P  ++ D+  +          ++ RS   +++   
Sbjct: 626 TANSESFVEARPLDTWRAVYPRLPEPVRQIFDLTGQHSFVTGSDIGLWLRSPLVQDSLFL 685

Query: 403 MCADDYVQRM--------TFDSYLYKRVVPGNPIEDIK 314
           +CA    Q +        T D Y++++ +PG P+ED++
Sbjct: 686 LCARTAWQAVDDPADIGFTRDVYIHRQPIPGYPLEDVR 723

>HIS5_NEIG1 (Q5FA21) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 212

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 134 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 292
           LKSVR+A  L   +     S +P R+S    V    QG +P   A   RGG DEA
Sbjct: 17  LKSVRTAGQLAGKNTKIFLSGDPDRVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71

>COQ6_HUMAN (Q9Y2Z9) Ubiquinone biosynthesis monooxgenase COQ6 (EC 1.14.13.-)|
          Length = 468

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 23/81 (28%), Positives = 34/81 (41%)
 Frame = -2

Query: 673 VSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRLVDESDLRKYLAEF 494
           V  RV L+GDAA  V   +G+G+          A  +   + NG  L   S L  Y  E 
Sbjct: 357 VRPRVALIGDAAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETER 416

Query: 493 DRLYWPTYKVLDILQKVFYRS 431
            R         D+L++++  S
Sbjct: 417 QRHNTALLAATDLLKRLYSTS 437

>HIS5_NEIMA (Q9JVH3) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 212

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 134 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 292
           LKSVR+A  L   +     S +P R+S    V    QG +P   A   RGG DEA
Sbjct: 17  LKSVRTAGQLAGKNVEIFLSGDPERVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71

>LEU2_STAS1 (Q49Z14) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 456

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 39/145 (26%), Positives = 52/145 (35%), Gaps = 25/145 (17%)
 Frame = -2

Query: 637 GYVTKCSGEGIYFAAKSGRM--CAEAIVAGSANGTRLVDESDL-----RKYL-------- 503
           GY  + SGE I   +   RM  C  AI AG+  G    DE+       R Y         
Sbjct: 197 GYALEFSGETIRSLSMEARMTICNMAIEAGAKYGMMAPDETTFEYVKGRPYATNYKYDID 256

Query: 502 ----------AEFDRLYWPTYKVLDILQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLY 353
                     AEFDR+   T  V D+  +V + +N            +        +Y Y
Sbjct: 257 AWRELYTDEDAEFDRVI--TLDVTDLEPQVTWGTNPEMGVSFNTPFPEIQNVNDERAYNY 314

Query: 352 KRVVPGNPIEDIKLAVNTIGSLVRA 278
             + PG   EDI L    +GS   A
Sbjct: 315 MGLQPGQKAEDIDLGYVFLGSCTNA 339

>LEU2_VIBPA (Q87SS9) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 471

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
 Frame = -2

Query: 673 VSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRM--CAEAIVAGSANGTRLVDESDL----- 515
           + G+ T  G   GYV +  GE I   +  GRM  C  AI  G+  G    DE+       
Sbjct: 187 IIGKTTAAG-GTGYVVEFCGEAITDLSMEGRMTVCNMAIELGAKAGLIAPDETTFEYIKG 245

Query: 514 RKYL---AEFDRL--YWPTYK 467
           RK+    A+FD    YW T K
Sbjct: 246 RKFSPQGADFDAAVEYWKTLK 266

>ETFD_SCHPO (P87111) Probable electron transfer flavoprotein-ubiquinone|
           oxidoreductase, mitochondrial precursor (EC 1.5.5.1)
           (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF
           dehydrogenase) (Electron-transferring-flavoprotein
           dehydrogenase)
          Length = 632

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -2

Query: 682 PKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIV 560
           PK V     L+G +AG+V     +G + A KSG + A+AIV
Sbjct: 393 PKLVFPGGALIGCSAGFVNVAKIKGTHTAMKSGIVAADAIV 433

>FABZ_PARUW (Q6ME73) (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase|
           (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase)
          Length = 154

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = -2

Query: 637 GYVTKCSGEGIYFAAKSGRMCAEAIV-----AGSANGTRLVDESDL 515
           G V    GEG++F++K GR+ AEA+V     A +  G   VD+S +
Sbjct: 109 GDVLHLKGEGLHFSSKGGRIKAEALVNQKIAAEAEIGFVFVDKSQI 154

>EVX2_HUMAN (Q03828) Homeobox even-skipped homolog protein 2 (EVX-2)|
          Length = 476

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -2

Query: 649 GDAAGYVTKCSGEGI-YFAAKSGRMCAEAIVAGSANGTRLVDESDLRKYLAEFDRLYWPT 473
           G AAG  T  SG G+      SG     A + GS +G        +R+Y   F R     
Sbjct: 148 GSAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGSGA-----DQVRRYRTAFTR----- 197

Query: 472 YKVLDILQKVFYRSN 428
            + +  L+K FYR N
Sbjct: 198 -EQIARLEKEFYREN 211

>HIS5_NEIMB (Q9K0H2) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 212

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 134 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 292
           LKSVR+A  L   +     S +P R+S    V    QG +P   A  +R G DEA
Sbjct: 17  LKSVRTAGQLAGKNTEIFLSGDPDRVSRADKVIFPGQGAMPDCMAALKRDGLDEA 71

>VIOC_CHRVO (Q9S3U9) Probable monooxygenase vioC (EC 1.-.-.-)|
          Length = 429

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
 Frame = -2

Query: 667 GRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRLVDE-SDLRKYLAE-F 494
           G V L+GDAA       G+G+  A +  R   E +     +  +   E ++LRK  A+  
Sbjct: 299 GNVLLLGDAAHATAPFLGQGMNMALEDARTFVELLDRHQGDQDKAFPEFTELRKVQADAM 358

Query: 493 DRLYWPTYKVLDILQKVFY-RSNAAR---EAFVEMCADDYVQRMTFDSYLYKRV 344
             +    Y VL     +F+ R+   R     F  +   D  +++ F S  Y R+
Sbjct: 359 QDMARANYDVLSCSNPIFFMRARYTRYMHSKFPGLYPPDMAEKLYFTSEPYDRL 412

>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 54  VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 224
           V  NG G  K R L R   +     S ++P     + A+P+ PP+LR       GRF
Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335

>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 54  VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 224
           V  NG G  K R L R   +     S ++P     + A+P+ PP+LR       GRF
Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335

>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 54  VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 224
           V  NG G  K R L R   +     S ++P     + A+P+ PP+LR       GRF
Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335

>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 54  VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 224
           V  NG G  K R L R   +     S ++P     + A+P+ PP+LR       GRF
Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335

>Y1300_SYNY3 (P72835) Hypothetical protein slr1300|
          Length = 414

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = -2

Query: 673 VSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRLVDESDLRKYLAEF 494
           V  R+ LVGDAA       G+G+    + G   A+ I    + G      + L++Y    
Sbjct: 286 VQPRLALVGDAAHCCHPVGGQGLNLGIRDGAALAQVIATAHSQGEDWGSLAVLKRYEHWR 345

Query: 493 DRLYWPTYKVLDILQKVF 440
               W      D+L + F
Sbjct: 346 KPENWLILGFTDLLDRFF 363


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,337,597
Number of Sequences: 219361
Number of extensions: 1725996
Number of successful extensions: 6391
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 6065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6388
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)