ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18e04 |
|---|---|
| Clone Library Name | barley_pub |
>IF3C_ORYSA (Q94HF1) Eukaryotic translation initiation factor 3 subunit 12| (eIF-3 p25) (eIF3k) Length = 226 Score = 271 bits (694), Expect = 1e-72 Identities = 131/143 (91%), Positives = 137/143 (95%) Frame = -1 Query: 681 LCLFLIPEHVQMEEQFKTMIVLSHYLETGRFRQFWDEASKSRNTLDAVPGFEQAIQSYAI 502 LCLFLIPEHVQMEEQFKT+IVLSHYLET RFRQFWDEASK+RN LD VPGFEQAIQSYAI Sbjct: 84 LCLFLIPEHVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVVPGFEQAIQSYAI 143 Query: 501 HVLSLTYQKVPRPVLAEAINIEGLALDKFMEYHAANSGWVIENGTRSQLIVLPRNEFNHP 322 HVLSLTYQKVPRPVLAEAINIEGLALDKF+E+H ANSGWVIE G RSQLIVLPRNEFNHP Sbjct: 144 HVLSLTYQKVPRPVLAEAINIEGLALDKFLEHHIANSGWVIEKGARSQLIVLPRNEFNHP 203 Query: 321 ELKKNTADTVPFEHVTRIFPILS 253 ELKKNTA+TVPFEHVTRIFP+LS Sbjct: 204 ELKKNTAETVPFEHVTRIFPVLS 226
>IF3C_ARATH (Q9SZA3) Eukaryotic translation initiation factor 3 subunit 12| (eIF-3 p25) (eIF3k) Length = 226 Score = 217 bits (553), Expect = 2e-56 Identities = 103/142 (72%), Positives = 123/142 (86%) Frame = -1 Query: 681 LCLFLIPEHVQMEEQFKTMIVLSHYLETGRFRQFWDEASKSRNTLDAVPGFEQAIQSYAI 502 LCLFLIPE VQMEEQFK++IVLSHYLETGRF+QFWDEA+K+R+ L+AVPGFEQAIQ+YA Sbjct: 86 LCLFLIPERVQMEEQFKSLIVLSHYLETGRFQQFWDEAAKNRHILEAVPGFEQAIQAYAS 145 Query: 501 HVLSLTYQKVPRPVLAEAINIEGLALDKFMEYHAANSGWVIENGTRSQLIVLPRNEFNHP 322 H+LSL+YQKVPR VLAEA+N++G +LDKF+E NSGW++E S IVLP+NEFNHP Sbjct: 146 HLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQQVTNSGWIVEKEGGS--IVLPQNEFNHP 203 Query: 321 ELKKNTADTVPFEHVTRIFPIL 256 ELKKNT + VP EH+ RIFPIL Sbjct: 204 ELKKNTGENVPLEHIARIFPIL 225
>IF3C_BOVIN (Q3T0V3) Eukaryotic translation initiation factor 3 subunit 12| (eIF-3 p25) (eIF3k) Length = 218 Score = 64.3 bits (155), Expect = 3e-10 Identities = 37/138 (26%), Positives = 68/138 (49%) Frame = -1 Query: 681 LCLFLIPEHVQMEEQFKTMIVLSHYLETGRFRQFWDEASKSRNTLDAVPGFEQAIQSYAI 502 LC +I + Q E + ++ L LET F+ FW ++ + L+ + GFE +++ + Sbjct: 84 LCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFIC 143 Query: 501 HVLSLTYQKVPRPVLAEAINIEGLALDKFMEYHAANSGWVIENGTRSQLIVLPRNEFNHP 322 HV+ +TYQ + R +LAE + G D ++ + GW + Q+ + + E P Sbjct: 144 HVVGITYQHIDRWLLAEML---GDLTDSQLKVWMSKYGWSADES--GQIFICSQEESIKP 198 Query: 321 ELKKNTADTVPFEHVTRI 268 KN + + F+ V+ I Sbjct: 199 ---KNIVEKIDFDSVSSI 213
>IF3C_MOUSE (Q9DBZ5) Eukaryotic translation initiation factor 3 subunit 12| (eIF-3 p25) (eIF3k) Length = 218 Score = 63.9 bits (154), Expect = 4e-10 Identities = 37/138 (26%), Positives = 68/138 (49%) Frame = -1 Query: 681 LCLFLIPEHVQMEEQFKTMIVLSHYLETGRFRQFWDEASKSRNTLDAVPGFEQAIQSYAI 502 LC +I + Q E + ++ L LET F+ FW ++ + L+ + GFE +++ + Sbjct: 84 LCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFIC 143 Query: 501 HVLSLTYQKVPRPVLAEAINIEGLALDKFMEYHAANSGWVIENGTRSQLIVLPRNEFNHP 322 HV+ +TYQ + R +LAE + G D ++ + GW + Q+ + + E P Sbjct: 144 HVVGITYQHIDRWLLAEML---GDLTDNQLKVWMSKYGWSADES--GQVFICSQEESIKP 198 Query: 321 ELKKNTADTVPFEHVTRI 268 KN + + F+ V+ I Sbjct: 199 ---KNIVEKIDFDSVSSI 213
>IF3C_HUMAN (Q9UBQ5) Eukaryotic translation initiation factor 3 subunit 12| (eIF-3 p25) (eIF-3 p28) (eIF3k) (Muscle-specific gene M9 protein) (ARG134) (PLAC-24) Length = 218 Score = 63.9 bits (154), Expect = 4e-10 Identities = 37/138 (26%), Positives = 68/138 (49%) Frame = -1 Query: 681 LCLFLIPEHVQMEEQFKTMIVLSHYLETGRFRQFWDEASKSRNTLDAVPGFEQAIQSYAI 502 LC +I + Q E + ++ L LET F+ FW ++ + L+ + GFE +++ + Sbjct: 84 LCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFIC 143 Query: 501 HVLSLTYQKVPRPVLAEAINIEGLALDKFMEYHAANSGWVIENGTRSQLIVLPRNEFNHP 322 HV+ +TYQ + R +LAE + G D ++ + GW + Q+ + + E P Sbjct: 144 HVVGITYQHIDRWLLAEML---GDLSDSQLKVWMSKYGWSADES--GQIFICSQEESIKP 198 Query: 321 ELKKNTADTVPFEHVTRI 268 KN + + F+ V+ I Sbjct: 199 ---KNIVEKIDFDSVSSI 213
>IF3C_DROME (Q9W2D9) Probable eukaryotic translation initiation factor 3| subunit 12 (eIF-3 p25) (eIF3k) Length = 222 Score = 53.9 bits (128), Expect = 4e-07 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 2/136 (1%) Frame = -1 Query: 678 CLFLIPEHVQMEEQFKTMIVLSHYLETGRFRQFWDEASKSRNTLDAVPGFEQAIQSYAIH 499 CL L+P+ ++ +E +T+I L+ LE F FW A +RN + GF +I+ + H Sbjct: 91 CL-LLPQQMK-DENVQTIIDLADILERADFTLFWQRAEVNRNMFRHITGFHDSIRKFVSH 148 Query: 498 VLSLTYQKVPRPVLAEAI-NIEGLALDKFMEYHAANSGWVIENGTRSQLIVLPRNEFNHP 322 V+ T+Q + + +L E + IE L+ W+ NG ++Q L Sbjct: 149 VVGTTFQTIRKDLLKELLGGIEDSTLE----------SWIKRNGWKNQGQGLVIVAMQDD 198 Query: 321 ELK-KNTADTVPFEHV 277 ++K KN + + F++V Sbjct: 199 KIKTKNITEKIEFDNV 214
>IF3C_CAEEL (Q9XUP3) Probable eukaryotic translation initiation factor 3| subunit 12 (eIF-3 p25) (eIF3k) Length = 240 Score = 38.1 bits (87), Expect = 0.025 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Frame = -1 Query: 534 GFEQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFMEYHAANSGW-VIENG 370 GFE A++ YA V+S+T+QK+ + +L+ + G A DK + A + GW ENG Sbjct: 149 GFEDAVKHYACRVISVTFQKIEKKMLSRLL---GGASDKEVTALAQSFGWEAKENG 201
>IF3C_CAEBR (Q61K76) Probable eukaryotic translation initiation factor 3| subunit 12 (eIF-3 p25) (eIF3k) Length = 240 Score = 36.2 bits (82), Expect = 0.095 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Frame = -1 Query: 534 GFEQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFMEYHAANSGW-VIENG 370 GFE AI+ YA V+S+T+Q + + +L+ + G A DK + A GW ENG Sbjct: 149 GFEDAIKHYACRVISVTFQNIEKKLLSSLL---GGASDKEVTALAKKFGWETKENG 201
>FAS2_YEAST (P19097) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1887 Score = 33.1 bits (74), Expect = 0.80 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = -1 Query: 528 EQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGL---ALDKFMEYHAANS 391 +Q++ S ++ + V R V++EAINI AL KFMEYH +N+ Sbjct: 410 KQSLLSLYFEIIHGVLKNVDREVVSEAINIMNRSNDALIKFMEYHISNT 458
>YKX1_SCHPO (O14116) Hypothetical protein C328.01c in chromosome I| Length = 1234 Score = 30.8 bits (68), Expect = 4.0 Identities = 16/63 (25%), Positives = 31/63 (49%) Frame = -2 Query: 584 SFGTRHQRAVTHWMLYQVSSRQSKAMRFMCSP*HTRKFLGQFLQRPSTLRVLHWTSLWSI 405 SFG R + + Y ++S F C P +++FL F + L + WTS+ ++ Sbjct: 865 SFG-HFLRRLREYCYYAIASFMRLGQAFFCVPGLSKQFLTAFFSHAAGLSLHQWTSMVNV 923 Query: 404 MLQ 396 +++ Sbjct: 924 VIK 926
>ILVB_SYNPX (Q7U5G1) Acetolactate synthase large subunit (EC 2.2.1.6) (AHAS)| (Acetohydroxy-acid synthase large subunit) (ALS) Length = 617 Score = 30.0 bits (66), Expect = 6.8 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 5/118 (4%) Frame = -1 Query: 633 KTMIVLSHYLETGRFRQ----FWDEASKSRNTLDAVPGFEQAIQSYAIHVLSLTYQKVPR 466 K +IV +H+ G RQ F+DE + + L+ +P F +S+ + + +T +++ Sbjct: 484 KVVIVNNHW--QGMVRQWQESFYDERYSASDMLNGMPDFIALARSFGVDGVKITDRELLH 541 Query: 465 PVLAEAINIEGLALDKFMEYHAANSGWVIENG-TRSQLIVLPRNEFNHPELKKNTADT 295 LA A+ + N ++ G + +Q++ LP +HPEL T T Sbjct: 542 RDLAAALQSPTPTMIDVHVRRGENCYPMVPPGKSNAQMVGLP----SHPELAMGTTRT 595 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,455,952 Number of Sequences: 219361 Number of extensions: 2234129 Number of successful extensions: 5126 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4969 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5124 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
