ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470556.1| Oryza sativa (japonica cultivar-group), predic... 442 e-121
2dbj|AK073293.1| Oryza sativa (japonica cultivar-group) cDNA clon... 442 e-121
3dbj|AK120235.1| Oryza sativa (japonica cultivar-group) cDNA clon... 434 e-118
4gb|AY107129.1| Zea mays PCO086222 mRNA sequence 309 6e-81
5gb|AY104081.1| Zea mays PCO086223 mRNA sequence 293 4e-76
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 194 3e-46
7gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nippon... 194 3e-46
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 194 3e-46
9ref|NM_119479.2| Arabidopsis thaliana EIF3K AT4G33250 (EIF3K) mR... 56 2e-04
10gb|BT013178.1| Lycopersicon esculentum clone 134254F, mRNA sequence 56 2e-04
11gb|AY091164.1| Arabidopsis thaliana unknown protein (At4g33250) ... 56 2e-04
12gb|AY050928.1| Arabidopsis thaliana unknown protein (At4g33250) ... 56 2e-04
13gb|AY091670.1| Arabidopsis thaliana AT4g33250/F17M5_10 mRNA, com... 56 2e-04
14gb|AY037191.1| Arabidopsis thaliana AT4g33250/F17M5_10 mRNA, com... 56 2e-04
15emb|BX827634.1|CNS0A3Q9 Arabidopsis thaliana Full-length cDNA Co... 56 2e-04
16gb|AF291713.1|AF291713 Arabidopsis thaliana initiation factor 3k... 56 2e-04
17emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, ... 44 0.60
18emb|AL035678.1|ATF17M5 Arabidopsis thaliana DNA chromosome 4, BA... 44 0.60
19emb|AL627444.10| Mouse DNA sequence from clone RP23-307A1 on chr... 42 2.4
20gb|AC083797.16| Homo sapiens 3 BAC RP11-114A6 (Roswell Park Canc... 42 2.4
21gb|AC158676.12| Mus musculus 6 BAC RP23-146N13 (Roswell Park Can... 42 2.4
22gb|AC007942.16|AC007942 Mus musculus chromosome , clone CT7-56G4... 42 2.4
23gb|AC164373.4| Mus musculus chromosome 1, clone RP23-36O22, comp... 42 2.4
24gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 42 2.4
25gb|AC149385.2| Phakopsora pachyrhizi clone JGIAFNA-5B11, complet... 42 2.4
26emb|X71905.1|NSMRNA N.sylvestris mRNA 42 2.4
27gb|AC164302.2| Mus musculus BAC clone RP23-286N12 from chromosom... 40 9.3
28gb|AC159127.8| Mus musculus chromosome 3, clone RP24-214E8, comp... 40 9.3
29gb|AC163402.5| Mus musculus chromosome 7, clone RP23-290H21, com... 40 9.3
30gb|AC160335.6| Mus musculus BAC clone RP23-38N19 from chromosome... 40 9.3
31gb|AC107368.11| Mus musculus chromosome 3, clone RP23-243N8, com... 40 9.3
32gb|AC108948.3| Mus musculus BAC clone RP23-183P12 from 15, compl... 40 9.3
33gb|AC010048.5| Drosophila melanogaster 3L BAC RP98-5B23 (Roswell... 40 9.3
34gb|AC115080.13| Mus musculus chromosome 7, clone RP24-464M7, com... 40 9.3
35dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
36gb|AC125455.3| Mus musculus BAC clone RP24-170L2 from chromosome... 40 9.3
37dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
38dbj|AB049726.1| Anguilla japonica eUT mRNA for gill urea transpo... 40 9.3
39gb|AE003535.3| Drosophila melanogaster chromosome 3L, section 50... 40 9.3
40gb|AC121109.5| Mus musculus chromosome 7, clone RP24-445I8, comp... 40 9.3
41gb|DQ012085.1| Pan troglodytes troglodytes beta-defensin 134 (DE... 40 9.3 
>ref|XM_470556.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 681

 Score =  442 bits (223), Expect = e-121
 Identities = 370/419 (88%)
 Strand = Plus / Minus

                                                                       
Query: 263 gggaatatgcgggtcacgtgctcgaacggaacggtgtcggctgtgttcttcttgagttca 322
           ||||||||||| || || |||||||||||||| || || ||||||||||||||||| |||
Sbjct: 668 gggaatatgcgagttacatgctcgaacggaacagtttcagctgtgttcttcttgagctca 609

                                                                       
Query: 323 gggtgattgaactcgttgcgcggaaggacaatcagttgggagcgtgtaccattctcaatg 382
           |||||||||||||||||||| |||||||||||||| || || |||| ||| ||||| || 
Sbjct: 608 gggtgattgaactcgttgcgtggaaggacaatcagctgagatcgtgcacccttctcgatc 549

                                                                       
Query: 383 acccatcctgagtttgcagcatgatactccataaacttgtccaatgcaagaccctcaatg 442
           ||||| || |||||||||  ||| | |||||  |||||||||||||||||||||||||||
Sbjct: 548 acccaaccggagtttgcaatatggtgctccaggaacttgtccaatgcaagaccctcaatg 489

                                                                       
Query: 443 ttgatggcctctgcaagaactggcctaggaactttctggtatgtcaaggagagcacatga 502
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 488 ttgatggcctccgcaagaacaggcctaggaactttctggtatgtcaaggagagcacatgt 429

                                                                       
Query: 503 atcgcatagctttggattgcctgctcgaaacctggtacagcatccagtgtgttacggctc 562
           |||||||||  ||||||||||||||| |||||||| ||| |||||| | |||| ||| ||
Sbjct: 428 atcgcataggattggattgcctgctcaaaacctggaacaacatccaatatgttgcggttc 369

                                                                       
Query: 563 tttgatgcctcgtcccaaaactggcggaacctaccagtctccaggtagtgagaaaggact 622
           || || ||||| |||||||| || ||||||||| ||||||||||||||||||| || |||
Sbjct: 368 ttcgacgcctcatcccaaaattgacggaacctagcagtctccaggtagtgagagagaact 309

                                                                      
Query: 623 atcatagtcttgaactgctcctccatttgcacatgttcaggaattaagaacaagcatag 681
           ||||  ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 308 atcaacgtcttgaactgttcctccatttgcacatgctctggaattaagaataagcatag 250
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>dbj|AK073293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024B21, full
           insert sequence
          Length = 1046

 Score =  442 bits (223), Expect = e-121
 Identities = 370/419 (88%)
 Strand = Plus / Minus

                                                                       
Query: 263 gggaatatgcgggtcacgtgctcgaacggaacggtgtcggctgtgttcttcttgagttca 322
           ||||||||||| || || |||||||||||||| || || ||||||||||||||||| |||
Sbjct: 803 gggaatatgcgagttacatgctcgaacggaacagtttcagctgtgttcttcttgagctca 744

                                                                       
Query: 323 gggtgattgaactcgttgcgcggaaggacaatcagttgggagcgtgtaccattctcaatg 382
           |||||||||||||||||||| |||||||||||||| || || |||| ||| ||||| || 
Sbjct: 743 gggtgattgaactcgttgcgtggaaggacaatcagctgagatcgtgcacccttctcgatc 684

                                                                       
Query: 383 acccatcctgagtttgcagcatgatactccataaacttgtccaatgcaagaccctcaatg 442
           ||||| || |||||||||  ||| | |||||  |||||||||||||||||||||||||||
Sbjct: 683 acccaaccggagtttgcaatatggtgctccaggaacttgtccaatgcaagaccctcaatg 624

                                                                       
Query: 443 ttgatggcctctgcaagaactggcctaggaactttctggtatgtcaaggagagcacatga 502
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 623 ttgatggcctccgcaagaacaggcctaggaactttctggtatgtcaaggagagcacatgt 564

                                                                       
Query: 503 atcgcatagctttggattgcctgctcgaaacctggtacagcatccagtgtgttacggctc 562
           |||||||||  ||||||||||||||| |||||||| ||| |||||| | |||| ||| ||
Sbjct: 563 atcgcataggattggattgcctgctcaaaacctggaacaacatccaatatgttgcggttc 504

                                                                       
Query: 563 tttgatgcctcgtcccaaaactggcggaacctaccagtctccaggtagtgagaaaggact 622
           || || ||||| |||||||| || ||||||||| ||||||||||||||||||| || |||
Sbjct: 503 ttcgacgcctcatcccaaaattgacggaacctagcagtctccaggtagtgagagagaact 444

                                                                      
Query: 623 atcatagtcttgaactgctcctccatttgcacatgttcaggaattaagaacaagcatag 681
           ||||  ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 443 atcaacgtcttgaactgttcctccatttgcacatgctctggaattaagaataagcatag 385
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>dbj|AK120235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043M05, full
           insert sequence
          Length = 954

 Score =  434 bits (219), Expect = e-118
 Identities = 369/419 (88%)
 Strand = Plus / Minus

                                                                       
Query: 263 gggaatatgcgggtcacgtgctcgaacggaacggtgtcggctgtgttcttcttgagttca 322
           ||||||||||| || || |||||||||||||| || || ||||||||||||||||| |||
Sbjct: 803 gggaatatgcgagttacatgctcgaacggaacagtttcagctgtgttcttcttgagctca 744

                                                                       
Query: 323 gggtgattgaactcgttgcgcggaaggacaatcagttgggagcgtgtaccattctcaatg 382
           |||||||||||||||||||| |||||||||||||| || || |||| ||| ||||| || 
Sbjct: 743 gggtgattgaactcgttgcgtggaaggacaatcagctgagatcgtgcacccttctcgatc 684

                                                                       
Query: 383 acccatcctgagtttgcagcatgatactccataaacttgtccaatgcaagaccctcaatg 442
           ||||| || |||||||||   || | |||||  |||||||||||||||||||||||||||
Sbjct: 683 acccaaccggagtttgcaatgtggtgctccaggaacttgtccaatgcaagaccctcaatg 624

                                                                       
Query: 443 ttgatggcctctgcaagaactggcctaggaactttctggtatgtcaaggagagcacatga 502
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 623 ttgatggcctccgcaagaacaggcctaggaactttctggtatgtcaaggagagcacatgt 564

                                                                       
Query: 503 atcgcatagctttggattgcctgctcgaaacctggtacagcatccagtgtgttacggctc 562
           |||||||||  ||||||||||||||| |||||||| ||| |||||| | |||| ||| ||
Sbjct: 563 atcgcataggattggattgcctgctcaaaacctggaacaacatccaatatgttgcggttc 504

                                                                       
Query: 563 tttgatgcctcgtcccaaaactggcggaacctaccagtctccaggtagtgagaaaggact 622
           || || ||||| |||||||| || ||||||||| ||||||||||||||||||| || |||
Sbjct: 503 ttcgacgcctcatcccaaaattgacggaacctagcagtctccaggtagtgagagagaact 444

                                                                      
Query: 623 atcatagtcttgaactgctcctccatttgcacatgttcaggaattaagaacaagcatag 681
           ||||  ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 443 atcaacgtcttgaactgttcctccatttgcacatgctctggaattaagaataagcatag 385
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>gb|AY107129.1| Zea mays PCO086222 mRNA sequence
          Length = 965

 Score =  309 bits (156), Expect = 6e-81
 Identities = 351/416 (84%)
 Strand = Plus / Minus

                                                                       
Query: 263 gggaatatgcgggtcacgtgctcgaacggaacggtgtcggctgtgttcttcttgagttca 322
           ||||||||||| || | |||||| || |||||||| || ||||||||||||||||| |  
Sbjct: 768 gggaatatgcgtgttaggtgctcaaatggaacggtatcagctgtgttcttcttgagctgg 709

                                                                       
Query: 323 gggtgattgaactcgttgcgcggaaggacaatcagttgggagcgtgtaccattctcaatg 382
           |||||||||||||| ||||| ||||| ||||||| ||| ||  |   ||| |||||||| 
Sbjct: 708 gggtgattgaactcattgcgtggaagaacaatcacttgagactgcccacccttctcaatt 649

                                                                       
Query: 383 acccatcctgagtttgcagcatgatactccataaacttgtccaatgcaagaccctcaatg 442
           ||||| |||||||| |||||||| ||||| | |||||||||||| || ||||| ||||||
Sbjct: 648 acccaacctgagttcgcagcatggtactcaagaaacttgtccaaagcgagaccttcaatg 589

                                                                       
Query: 443 ttgatggcctctgcaagaactggcctaggaactttctggtatgtcaaggagagcacatga 502
           ||||| |||||||||||||   |||| ||||||||||||||||||||||| || ||||||
Sbjct: 588 ttgattgcctctgcaagaatatgccttggaactttctggtatgtcaaggaaagtacatga 529

                                                                       
Query: 503 atcgcatagctttggattgcctgctcgaaacctggtacagcatccagtgtgttacggctc 562
           || ||||||  ||||||||||||||| |||||||| || || |||| | |||  ||| | 
Sbjct: 528 attgcataggattggattgcctgctcaaaacctggaactgcttccaatatgtggcggttg 469

                                                                       
Query: 563 tttgatgcctcgtcccaaaactggcggaacctaccagtctccaggtagtgagaaaggact 622
           |||| ||| || ||||||||||| | ||||||| ||||||| || ||||||||||| |||
Sbjct: 468 tttgctgcgtcatcccaaaactgcctgaacctagcagtctctagatagtgagaaagaact 409

                                                                   
Query: 623 atcatagtcttgaactgctcctccatttgcacatgttcaggaattaagaacaagca 678
           ||||  | |||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 408 atcaatgccttgaattgctcttccatttgcacatgttcaggaattaagaataagca 353
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>gb|AY104081.1| Zea mays PCO086223 mRNA sequence
          Length = 1097

 Score =  293 bits (148), Expect = 4e-76
 Identities = 349/416 (83%)
 Strand = Plus / Minus

                                                                       
Query: 263 gggaatatgcgggtcacgtgctcgaacggaacggtgtcggctgtgttcttcttgagttca 322
           ||||||||||| || ||||| || ||||||| | | |||||||||||||||||||| || 
Sbjct: 823 gggaatatgcgtgttacgtgttcaaacggaaggatatcggctgtgttcttcttgagctct 764

                                                                       
Query: 323 gggtgattgaactcgttgcgcggaaggacaatcagttgggagcgtgtaccattctcaatg 382
           |||||||||||||| || |||||||| ||||||| ||| ||  |   ||| |||||||| 
Sbjct: 763 gggtgattgaactcattacgcggaagaacaatcacttgagactgcccacccttctcaatc 704

                                                                       
Query: 383 acccatcctgagtttgcagcatgatactccataaacttgtccaatgcaagaccctcaatg 442
           ||||| |||||||| || ||||| ||||| | |||||||||||| || ||||| || |||
Sbjct: 703 acccaacctgagttcgcggcatggtactcaagaaacttgtccaacgcgagaccttcgatg 644

                                                                       
Query: 443 ttgatggcctctgcaagaactggcctaggaactttctggtatgtcaaggagagcacatga 502
           ||||| |||||| ||||||  ||||| ||||||||||||||||||||||| || ||||||
Sbjct: 643 ttgattgcctctacaagaataggccttggaactttctggtatgtcaaggaaagtacatga 584

                                                                       
Query: 503 atcgcatagctttggattgcctgctcgaaacctggtacagcatccagtgtgttacggctc 562
           |||||||||  ||||||||| || ||||||||||| || || |||  | |||  ||| ||
Sbjct: 583 atcgcataggattggattgcttgttcgaaacctggcactgcttccgatatgtggcggttc 524

                                                                       
Query: 563 tttgatgcctcgtcccaaaactggcggaacctaccagtctccaggtagtgagaaaggact 622
           |||| ||| || |||||||| || | ||||||| ||||||| |||||||||||||| |||
Sbjct: 523 tttgctgcttcatcccaaaattgactgaacctagcagtctctaggtagtgagaaagaact 464

                                                                   
Query: 623 atcatagtcttgaactgctcctccatttgcacatgttcaggaattaagaacaagca 678
           ||||    |||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct: 463 atcaataccttgaattgctcctccatttgcacatgttcagggattaagaataagca 408
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  194 bits (98), Expect = 3e-46
 Identities = 167/190 (87%)
 Strand = Plus / Plus

                                                                           
Query: 263     gggaatatgcgggtcacgtgctcgaacggaacggtgtcggctgtgttcttcttgagttca 322
               ||||||||||| || || |||||||||||||| || || ||||||||||||||||| |||
Sbjct: 4321400 gggaatatgcgagttacatgctcgaacggaacagtttcagctgtgttcttcttgagctca 4321459

                                                                           
Query: 323     gggtgattgaactcgttgcgcggaaggacaatcagttgggagcgtgtaccattctcaatg 382
               |||||||||||||||||||| |||||||||||||| || || |||| ||| ||||| || 
Sbjct: 4321460 gggtgattgaactcgttgcgtggaaggacaatcagctgagatcgtgcacccttctcgatc 4321519

                                                                           
Query: 383     acccatcctgagtttgcagcatgatactccataaacttgtccaatgcaagaccctcaatg 442
               ||||| || |||||||||  ||| | |||||  |||||||||||||||||||||||||||
Sbjct: 4321520 acccaaccggagtttgcaatatggtgctccaggaacttgtccaatgcaagaccctcaatg 4321579

                         
Query: 443     ttgatggcct 452
               ||||||||||
Sbjct: 4321580 ttgatggcct 4321589



 Score =  125 bits (63), Expect = 2e-25
 Identities = 81/87 (93%)
 Strand = Plus / Plus

                                                                           
Query: 450     cctctgcaagaactggcctaggaactttctggtatgtcaaggagagcacatgaatcgcat 509
               |||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4321844 cctccgcaagaacaggcctaggaactttctggtatgtcaaggagagcacatgtatcgcat 4321903

                                          
Query: 510     agctttggattgcctgctcgaaacctg 536
               ||  ||||||||||||||| |||||||
Sbjct: 4321904 aggattggattgcctgctcaaaacctg 4321930



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                   
Query: 601     ctccaggtagtgagaaaggactatcatagtcttgaactgctcctccatttgc 652
               ||||||||||||||| || |||||||  ||||||||||| ||||||||||||
Sbjct: 4322615 ctccaggtagtgagagagaactatcaacgtcttgaactgttcctccatttgc 4322666
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>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0032G08, from Chromosome 3, complete sequence
          Length = 122052

 Score =  194 bits (98), Expect = 3e-46
 Identities = 167/190 (87%)
 Strand = Plus / Minus

                                                                          
Query: 263    gggaatatgcgggtcacgtgctcgaacggaacggtgtcggctgtgttcttcttgagttca 322
              ||||||||||| || || |||||||||||||| || || ||||||||||||||||| |||
Sbjct: 105097 gggaatatgcgagttacatgctcgaacggaacagtttcagctgtgttcttcttgagctca 105038

                                                                          
Query: 323    gggtgattgaactcgttgcgcggaaggacaatcagttgggagcgtgtaccattctcaatg 382
              |||||||||||||||||||| |||||||||||||| || || |||| ||| ||||| || 
Sbjct: 105037 gggtgattgaactcgttgcgtggaaggacaatcagctgagatcgtgcacccttctcgatc 104978

                                                                          
Query: 383    acccatcctgagtttgcagcatgatactccataaacttgtccaatgcaagaccctcaatg 442
              ||||| || |||||||||  ||| | |||||  |||||||||||||||||||||||||||
Sbjct: 104977 acccaaccggagtttgcaatatggtgctccaggaacttgtccaatgcaagaccctcaatg 104918

                        
Query: 443    ttgatggcct 452
              ||||||||||
Sbjct: 104917 ttgatggcct 104908



 Score =  125 bits (63), Expect = 2e-25
 Identities = 81/87 (93%)
 Strand = Plus / Minus

                                                                          
Query: 450    cctctgcaagaactggcctaggaactttctggtatgtcaaggagagcacatgaatcgcat 509
              |||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 104653 cctccgcaagaacaggcctaggaactttctggtatgtcaaggagagcacatgtatcgcat 104594

                                         
Query: 510    agctttggattgcctgctcgaaacctg 536
              ||  ||||||||||||||| |||||||
Sbjct: 104593 aggattggattgcctgctcaaaacctg 104567



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                  
Query: 601    ctccaggtagtgagaaaggactatcatagtcttgaactgctcctccatttgc 652
              ||||||||||||||| || |||||||  ||||||||||| ||||||||||||
Sbjct: 103882 ctccaggtagtgagagagaactatcaacgtcttgaactgttcctccatttgc 103831
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  194 bits (98), Expect = 3e-46
 Identities = 167/190 (87%)
 Strand = Plus / Plus

                                                                           
Query: 263     gggaatatgcgggtcacgtgctcgaacggaacggtgtcggctgtgttcttcttgagttca 322
               ||||||||||| || || |||||||||||||| || || ||||||||||||||||| |||
Sbjct: 4321515 gggaatatgcgagttacatgctcgaacggaacagtttcagctgtgttcttcttgagctca 4321574

                                                                           
Query: 323     gggtgattgaactcgttgcgcggaaggacaatcagttgggagcgtgtaccattctcaatg 382
               |||||||||||||||||||| |||||||||||||| || || |||| ||| ||||| || 
Sbjct: 4321575 gggtgattgaactcgttgcgtggaaggacaatcagctgagatcgtgcacccttctcgatc 4321634

                                                                           
Query: 383     acccatcctgagtttgcagcatgatactccataaacttgtccaatgcaagaccctcaatg 442
               ||||| || |||||||||  ||| | |||||  |||||||||||||||||||||||||||
Sbjct: 4321635 acccaaccggagtttgcaatatggtgctccaggaacttgtccaatgcaagaccctcaatg 4321694

                         
Query: 443     ttgatggcct 452
               ||||||||||
Sbjct: 4321695 ttgatggcct 4321704



 Score =  125 bits (63), Expect = 2e-25
 Identities = 81/87 (93%)
 Strand = Plus / Plus

                                                                           
Query: 450     cctctgcaagaactggcctaggaactttctggtatgtcaaggagagcacatgaatcgcat 509
               |||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4321959 cctccgcaagaacaggcctaggaactttctggtatgtcaaggagagcacatgtatcgcat 4322018

                                          
Query: 510     agctttggattgcctgctcgaaacctg 536
               ||  ||||||||||||||| |||||||
Sbjct: 4322019 aggattggattgcctgctcaaaacctg 4322045



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                   
Query: 601     ctccaggtagtgagaaaggactatcatagtcttgaactgctcctccatttgc 652
               ||||||||||||||| || |||||||  ||||||||||| ||||||||||||
Sbjct: 4322730 ctccaggtagtgagagagaactatcaacgtcttgaactgttcctccatttgc 4322781
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>ref|NM_119479.2| Arabidopsis thaliana EIF3K AT4G33250 (EIF3K) mRNA, complete cds
          Length = 936

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 575 tcccaaaactggcggaacctaccagtctccaggtagtgagaaaggactatcatagtcttg 634
           ||||| |||||  ||||||| |||||||| |||||||| || || || || |  | ||||
Sbjct: 446 tcccagaactgttggaacctcccagtctcaaggtagtgtgatagaacaattagtgacttg 387

                               
Query: 635 aactgctcctccatttgcac 654
           ||||||||||||||||||||
Sbjct: 386 aactgctcctccatttgcac 367
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>gb|BT013178.1| Lycopersicon esculentum clone 134254F, mRNA sequence
          Length = 1056

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 416 aacttgtccaatgcaagaccctcaatgttgatggcctctgcaagaactggcctaggaact 475
           ||||| ||||||| || ||||||||||||||| ||||| |||||||  | ||| ||||| 
Sbjct: 633 aacttatccaatgaaacaccctcaatgttgatagcctccgcaagaatggtccttggaacc 574

                   
Query: 476 ttctggta 483
           ||||||||
Sbjct: 573 ttctggta 566
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>gb|AY091164.1| Arabidopsis thaliana unknown protein (At4g33250) mRNA, complete cds
          Length = 712

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 575 tcccaaaactggcggaacctaccagtctccaggtagtgagaaaggactatcatagtcttg 634
           ||||| |||||  ||||||| |||||||| |||||||| || || || || |  | ||||
Sbjct: 362 tcccagaactgttggaacctcccagtctcaaggtagtgtgatagaacaattagtgacttg 303

                               
Query: 635 aactgctcctccatttgcac 654
           ||||||||||||||||||||
Sbjct: 302 aactgctcctccatttgcac 283
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>gb|AY050928.1| Arabidopsis thaliana unknown protein (At4g33250) mRNA, complete cds
          Length = 906

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 575 tcccaaaactggcggaacctaccagtctccaggtagtgagaaaggactatcatagtcttg 634
           ||||| |||||  ||||||| |||||||| |||||||| || || || || |  | ||||
Sbjct: 446 tcccagaactgttggaacctcccagtctcaaggtagtgtgatagaacaattagtgacttg 387

                               
Query: 635 aactgctcctccatttgcac 654
           ||||||||||||||||||||
Sbjct: 386 aactgctcctccatttgcac 367
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>gb|AY091670.1| Arabidopsis thaliana AT4g33250/F17M5_10 mRNA, complete cds
          Length = 681

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 575 tcccaaaactggcggaacctaccagtctccaggtagtgagaaaggactatcatagtcttg 634
           ||||| |||||  ||||||| |||||||| |||||||| || || || || |  | ||||
Sbjct: 362 tcccagaactgttggaacctcccagtctcaaggtagtgtgatagaacaattagtgacttg 303

                               
Query: 635 aactgctcctccatttgcac 654
           ||||||||||||||||||||
Sbjct: 302 aactgctcctccatttgcac 283
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>gb|AY037191.1| Arabidopsis thaliana AT4g33250/F17M5_10 mRNA, complete cds
          Length = 917

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 575 tcccaaaactggcggaacctaccagtctccaggtagtgagaaaggactatcatagtcttg 634
           ||||| |||||  ||||||| |||||||| |||||||| || || || || |  | ||||
Sbjct: 446 tcccagaactgttggaacctcccagtctcaaggtagtgtgatagaacaattagtgacttg 387

                               
Query: 635 aactgctcctccatttgcac 654
           ||||||||||||||||||||
Sbjct: 386 aactgctcctccatttgcac 367
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>emb|BX827634.1|CNS0A3Q9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS87ZG07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 569

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 575 tcccaaaactggcggaacctaccagtctccaggtagtgagaaaggactatcatagtcttg 634
           ||||| |||||  ||||||| |||||||| |||||||| || || || || |  | ||||
Sbjct: 141 tcccagaactgttggaacctcccagtctcaaggtagtgtgatagaacaattagtgacttg 82

                               
Query: 635 aactgctcctccatttgcac 654
           ||||||||||||||||||||
Sbjct: 81  aactgctcctccatttgcac 62
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>gb|AF291713.1|AF291713 Arabidopsis thaliana initiation factor 3k mRNA, complete cds
          Length = 911

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 575 tcccaaaactggcggaacctaccagtctccaggtagtgagaaaggactatcatagtcttg 634
           ||||| |||||  ||||||| |||||||| |||||||| || || || || |  | ||||
Sbjct: 421 tcccagaactgttggaacctcccagtctcaaggtagtgtgatagaacaattagtgacttg 362

                               
Query: 635 aactgctcctccatttgcac 654
           ||||||||||||||||||||
Sbjct: 361 aactgctcctccatttgcac 342
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>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79
          Length = 199536

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 631   cttgaactgctcctccatttgc 652
             ||||||||||||||||||||||
Sbjct: 67989 cttgaactgctcctccatttgc 68010
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>emb|AL035678.1|ATF17M5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17M5 (ESSA project)
          Length = 96475

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 631  cttgaactgctcctccatttgc 652
            ||||||||||||||||||||||
Sbjct: 3210 cttgaactgctcctccatttgc 3231
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>emb|AL627444.10| Mouse DNA sequence from clone RP23-307A1 on chromosome 11 Contains the
             5' end of the Gabrb2 gene for subunit beta 2
             gamma-aminobutyric acid (GABA-A) receptor, complete
             sequence
          Length = 176814

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 659   tcaggaattaagaacaagcat 679
             |||||||||||||||||||||
Sbjct: 34799 tcaggaattaagaacaagcat 34819
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>gb|AC083797.16| Homo sapiens 3 BAC RP11-114A6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157113

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 141   agactagcttcttcactggctcaagttct 169
             ||||||||| ||||||||||||| |||||
Sbjct: 74007 agactagctccttcactggctcatgttct 74035
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>gb|AC158676.12| Mus musculus 6 BAC RP23-146N13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 204560

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 446    atggcctctgcaagaactggc 466
              |||||||||||||||||||||
Sbjct: 112554 atggcctctgcaagaactggc 112534
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>gb|AC007942.16|AC007942 Mus musculus chromosome , clone CT7-56G4, complete sequence
          Length = 122955

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   atggcctctgcaagaactggc 466
             |||||||||||||||||||||
Sbjct: 77921 atggcctctgcaagaactggc 77901
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>gb|AC164373.4| Mus musculus chromosome 1, clone RP23-36O22, complete sequence
          Length = 171278

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 626   atagtcttgaactgctcctcc 646
             |||||||||||||||||||||
Sbjct: 91737 atagtcttgaactgctcctcc 91717
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 422  tccaatgcaagaccctcaatg 442
            |||||||||||||||||||||
Sbjct: 6517 tccaatgcaagaccctcaatg 6497
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>gb|AC149385.2| Phakopsora pachyrhizi clone JGIAFNA-5B11, complete sequence
          Length = 41879

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 32    tggcagaaatgcacaagaaaa 52
             |||||||||||||||||||||
Sbjct: 29025 tggcagaaatgcacaagaaaa 29005
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>emb|X71905.1|NSMRNA N.sylvestris mRNA
          Length = 1604

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 648 tttgcacatgttcaggaattaagaa 672
           ||||||||||||| |||||||||||
Sbjct: 349 tttgcacatgttctggaattaagaa 373
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>gb|AC164302.2| Mus musculus BAC clone RP23-286N12 from chromosome 16, complete sequence
          Length = 192765

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    tacaccatacgagagagaat 130
              ||||||||||||||||||||
Sbjct: 115562 tacaccatacgagagagaat 115581
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>gb|AC159127.8| Mus musculus chromosome 3, clone RP24-214E8, complete sequence
          Length = 195609

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    agaaatgcacaagaaaacat 55
             ||||||||||||||||||||
Sbjct: 60699 agaaatgcacaagaaaacat 60718
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>gb|AC163402.5| Mus musculus chromosome 7, clone RP23-290H21, complete sequence
          Length = 240582

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 598  agtctccaggtagtgagaaa 617
            ||||||||||||||||||||
Sbjct: 2878 agtctccaggtagtgagaaa 2859
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>gb|AC160335.6| Mus musculus BAC clone RP23-38N19 from chromosome 15, complete sequence
          Length = 212090

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   acagcatccagtgtgttacg 558
             ||||||||||||||||||||
Sbjct: 57397 acagcatccagtgtgttacg 57416
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>gb|AC107368.11| Mus musculus chromosome 3, clone RP23-243N8, complete sequence
          Length = 253744

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     agaaatgcacaagaaaacat 55
              ||||||||||||||||||||
Sbjct: 240192 agaaatgcacaagaaaacat 240211
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>gb|AC108948.3| Mus musculus BAC clone RP23-183P12 from 15, complete sequence
          Length = 196923

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 539    acagcatccagtgtgttacg 558
              ||||||||||||||||||||
Sbjct: 174467 acagcatccagtgtgttacg 174486
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>gb|AC010048.5| Drosophila melanogaster 3L BAC RP98-5B23 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 175316

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   gctgaatcagctcaagatgg 263
             ||||||||||||||||||||
Sbjct: 95559 gctgaatcagctcaagatgg 95540
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>gb|AC115080.13| Mus musculus chromosome 7, clone RP24-464M7, complete sequence
          Length = 158221

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 598   agtctccaggtagtgagaaa 617
             ||||||||||||||||||||
Sbjct: 38681 agtctccaggtagtgagaaa 38700
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    gacagacaaaagtgcttgat 225
              ||||||||||||||||||||
Sbjct: 399661 gacagacaaaagtgcttgat 399680
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>gb|AC125455.3| Mus musculus BAC clone RP24-170L2 from chromosome 15, complete sequence
          Length = 145059

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 539   acagcatccagtgtgttacg 558
             ||||||||||||||||||||
Sbjct: 43505 acagcatccagtgtgttacg 43486
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>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1359_D06
          Length = 146805

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    gacagacaaaagtgcttgat 225
              ||||||||||||||||||||
Sbjct: 128445 gacagacaaaagtgcttgat 128464
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>dbj|AB049726.1| Anguilla japonica eUT mRNA for gill urea transporter, complete cds
          Length = 1846

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 410 tccataaacttgtccaatgc 429
           ||||||||||||||||||||
Sbjct: 806 tccataaacttgtccaatgc 787
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>gb|AE003535.3| Drosophila melanogaster chromosome 3L, section 50 of 83 of the complete
              sequence
          Length = 278708

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    gctgaatcagctcaagatgg 263
              ||||||||||||||||||||
Sbjct: 260453 gctgaatcagctcaagatgg 260434
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>gb|AC121109.5| Mus musculus chromosome 7, clone RP24-445I8, complete sequence
          Length = 167819

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 598    agtctccaggtagtgagaaa 617
              ||||||||||||||||||||
Sbjct: 117828 agtctccaggtagtgagaaa 117847
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>gb|DQ012085.1| Pan troglodytes troglodytes beta-defensin 134 (DEFB134) mRNA,
          complete cds
          Length = 180

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 tggcagaaatgcacaagaaa 51
          ||||||||||||||||||||
Sbjct: 53 tggcagaaatgcacaagaaa 72


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,319,433
Number of Sequences: 3902068
Number of extensions: 5319433
Number of successful extensions: 103215
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103028
Number of HSP's gapped (non-prelim): 182
length of query: 681
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 658
effective length of database: 17,143,297,704
effective search space: 11280289889232
effective search space used: 11280289889232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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